Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007871

Physical Location & Seq

Genomic Coordinates Reverse (-)

40506778 .. 40510052

Gene Structure 3275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTTGGTGTCAATAATTTAAGCGGAGTGCCGTGTAACCATAAAACCAAGATTGCTCTCTCAATTTGGATCTCCGCCGTGAATCCCACCCTCAGCTCTCCCATATCAATATCGTCGACGAACAGGTCATTCTCGCACGAATGGAATGATGAAAAAAGAGATCCAAGATTTTCGTCCAGTTCCGGAGGAAGGTTGAAAAAGACATTACATATTATAGAGAACTTGGACAATAACGTACTTCGACGTCAGCTGTTACTTGTTGATACACTTAGTACCATTGGTAATGGATTATGTATGCCTCTACTAATCCTAGGCTTCGAAGGTCTAATTCATCCTTTTGGAAAAATTGGGAATAGCAAGAGGGTGGCTAACACAGTTTGTAAGGTGTCCCTGAAATTTGTTTACTTCGCTCTTGGGGCAGCTGCTACAACATTTCTATTCGTTTACTTTAGAATGTTATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

155

Amino Acids

17.05

Weight (kDa)

9.96

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14600
fragaria_vesca	FvH4_6g51011 FvH4_6g51011 FvH4_6g51011
malus_domestica	MD09G1029500.v1.1 MD17G1031500.v1.1
prunus_persica	Prupe.3G287900_v2.0.a1
pyrus_communis	pycom111g02350 pycom17g02900
rosa_chinensis	RchiOBHm_Chr2g0172551
rosa_laevigata	RLG00000002839 RLG00000016014 RLG00000021671 RLG00000022115
rosa_multiflora	Rmu_sc0000912.1_g000006
rosa_roxburghii	Rroxscaffold_2G00079770
rosa_rugosa	Rorug02G0559800
rosa_samantha	Rh2AG635900 Rh2BG649300 Rh2CG616100 Rh2DG663700 Rh3AG202500 Rh3DG228000
rosa_wichuraiana	Rw2G052610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
AatII	GACGTC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	116
AccIII	TCCGGA	1 cut(s)	182
AciI	CCGC	2 cut(s)	24, 75
AclWI	GGATC	2 cut(s)	77, 155
AcsI	RAATTY	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	2 cut(s)	237, 274
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	3 cut(s)	96, 250, 422
AluI	AGCT	3 cut(s)	96, 250, 422
AlwI	GGATC	2 cut(s)	77, 155
Aor13HI	TCCGGA	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	419, 422
ApoI	RAATTY	1 cut(s)	395
AspA2I	CCTAGG	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	318
AvrII	CCTAGG	1 cut(s)	310
BbvCI	CCTCAGC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	409, 431
BceAI	ACGGC	2 cut(s)	16, 62
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	420, 423
BlnI	CCTAGG	1 cut(s)	310
BlsI	GCNGC	2 cut(s)	421, 424
Bpu10I	CCTNAGC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	409, 431
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	373
Bsp119I	TTCGAA	1 cut(s)	318
Bsp13I	TCCGGA	1 cut(s)	182
Bsp143I	GATC	2 cut(s)	69, 160
BspACI	CCGC	2 cut(s)	24, 75
BspCNI	CTCAG	1 cut(s)	105
BspEI	TCCGGA	1 cut(s)	182
BspPI	GGATC	2 cut(s)	77, 155
BspT104I	TTCGAA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	69, 160
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	376
BstACI	GRCGYC	1 cut(s)	244
BstBI	TTCGAA	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	92, 269
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	2 cut(s)	72, 163
BstMBI	GATC	2 cut(s)	69, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	409, 431
BstX2I	RGATCY	2 cut(s)	69, 160
BstYI	RGATCY	2 cut(s)	69, 160
BtsCI	GGATG	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	236, 273
CviJI	RGCY	5 cut(s)	96, 250, 315, 368, 422
CviKI_1	RGCY	5 cut(s)	96, 250, 315, 368, 422
CviQI	GTAC	2 cut(s)	236, 273
DdeI	CTNAG	2 cut(s)	92, 269
DpnI	GATC	2 cut(s)	71, 162
DpnII	GATC	2 cut(s)	69, 160
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
FaiI	YATR	7 cut(s)	42, 104, 210, 215, 292, 296, 460
FaqI	GGGAC	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	116
Fnu4HI	GCNGC	2 cut(s)	420, 423
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	2 cut(s)	420, 423
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	2 cut(s)	420, 423
HapII	CCGG	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	183
Hpy166II	GTNNAC	3 cut(s)	117, 403, 445
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	3 cut(s)	117, 403, 445
Hpy99I	CGWCG	3 cut(s)	118, 121, 246
HpyAV	CCTTC	2 cut(s)	183, 314
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	2 cut(s)	234, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	2 cut(s)	92, 269
HpySE526I	ACGT	2 cut(s)	234, 244
Hsp92I	GRCGYC	1 cut(s)	244
Kpn2I	TCCGGA	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	69, 160
LpnPI	CCDG	4 cut(s)	109, 190, 196, 404
Lsp1109I	GCAGC	2 cut(s)	409, 431
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	234, 244
MaeIII	GTNAC	2 cut(s)	35, 252
MalI	GATC	2 cut(s)	71, 162
MboI	GATC	2 cut(s)	69, 160
MflI	RGATCY	2 cut(s)	69, 160
MluCI	AATT	5 cut(s)	16, 63, 327, 345, 395
MnlI	CCTC	4 cut(s)	101, 179, 309, 354
MroI	TCCGGA	1 cut(s)	182
MseI	TTAA	1 cut(s)	20
MspA1I	CMGCKG	2 cut(s)	250, 422
MspI	CCGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	2 cut(s)	69, 160
NspV	TTCGAA	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	421, 424
PsuI	RGATCY	2 cut(s)	69, 160
PvuII	CAGCTG	2 cut(s)	250, 422
RsaI	GTAC	2 cut(s)	237, 274
RsaNI	GTAC	2 cut(s)	236, 273
SalI	GTCGAC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	2 cut(s)	420, 423
Sau3AI	GATC	2 cut(s)	69, 160
SetI	ASST	9 cut(s)	98, 128, 194, 237, 247, 252, 325, 387, 424
SfuI	TTCGAA	1 cut(s)	318
SgrDI	CGTCGACG	1 cut(s)	115
Sse9I	AATT	5 cut(s)	16, 63, 327, 345, 395
SsiI	CCGC	2 cut(s)	24, 75
SspMI	CTAG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	2 cut(s)	237, 247
TaqI	TCGA	3 cut(s)	116, 241, 318
TasI	AATT	5 cut(s)	16, 63, 327, 345, 395
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseI	GCWGC	2 cut(s)	419, 422
TspDTI	ATGAA	2 cut(s)	165, 320
XapI	RAATTY	1 cut(s)	395
XmaJI	CCTAGG	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	116
XspI	CTAG	1 cut(s)	311
ZraI	GACGTC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.