Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0007871

Physical Location & Seq

Genomic Coordinates Forward (+)

1401260 .. 1402740

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTTGCCTGTTAATCCGACAAAGAAGCTGTCTTTTACTCGGTCCATTAATGATGGAGATTTGGTCATTGTCTATGAGAAGTATGATACAATGAAGGCTGTCAAGGTGTGTGCCGGTTCTGTGCTCGAAAACCGGTTCGGTTTGTTTAAGCATTCGGACTGGATAGGGAAGCAGTTTGGTTCCAAGGTTTTCAGCAGCAAGGGCGGATTTGTTTACTTGTTGGCTCCGACTCCCGAGCTTTGGACTTTGGTTTTAAGCCACAGGACTCAGATTCTGTACATTGCGGACATTAGTTTTGTGATCATGTTCTTGGAGTTGGTTCCGGGATGTTTGGTTCTTGAGTCGGGGACTGGGAGTGGATCTTTGACTACTTCACTTGCAAGGGCTGTTGCTCCTAAAGGACATGTCTATACGTTTGATTTCCATGAACAACGCGCGGTCTCTGCTAGGATGTTTTACTTTTATAGGGAGGATTTTGAGAAGACAGGATTAAGCAACGTGATCACTGTAGGAGTTAGAGATATTCAGGGGGAAGGGTTTCCGGATGAGTTTTCTGGAAGGGCAGATTCTGTCTTCCTGGACCTACCCCAACCCTGGCTGGCCATCCCTTCAGCTGCGAAAATGTTGAAGCAAGATGGGGTATTATGCTCCTTCTCCCCGTGTATTGAGCAGGTGCAACGAGCGTCAGAGACTATGAGGTCAAGCTTTACGGATATAAGGACGTTTGAGATTCTCCTTCGCACATATGAAGTCCGAGAATGGAAATTGGATGACTTCCAGGGAGATGAAGCTGGTTCCGTTGGATCTCATCCACGTAAAAGGCGGCAGCGATCAAGTGAAGGAAGCAATGCGCTGGAAACTACAGGATCTCCCACTGTCATGGCCAGGCCGTGCAGTGAGACCAGAGGCCACACTGGCTATTTGACATTTGCAAGACTCAAATGCCTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0031515 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061953 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCD14

Protein Analysis

318

Amino Acids

35.39

Weight (kDa)

8.16

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14600
fragaria_vesca	FvH4_6g51011 FvH4_6g51011 FvH4_6g51011
malus_domestica	MD09G1029500.v1.1 MD17G1031500.v1.1
prunus_persica	Prupe.3G287900_v2.0.a1
pyrus_communis	pycom111g02350 pycom17g02900
rosa_chinensis	RchiOBHm_Chr2g0172551
rosa_laevigata	RLG00000002839 RLG00000016014 RLG00000021671 RLG00000022115
rosa_multiflora	Rmu_sc0000912.1_g000006
rosa_roxburghii	Rroxscaffold_2G00079770
rosa_rugosa	Rorug02G0559800
rosa_samantha	Rh2AG635900 Rh2BG649300 Rh2CG616100 Rh2DG663700 Rh3AG202500 Rh3DG228000
rosa_wichuraiana	Rw2G052610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	661
AasI	GACNNNNNNGTC	1 cut(s)	697
Acc36I	ACCTGC	1 cut(s)	661
AccII	CGCG	2 cut(s)	435, 437
AccIII	TCCGGA	1 cut(s)	541
AciI	CCGC	4 cut(s)	204, 284, 437, 823
AclWI	GGATC	3 cut(s)	367, 811, 874
AcoI	YGGCCR	2 cut(s)	600, 882
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	240, 594
AflIII	ACRYGT	1 cut(s)	403
AgeI	ACCGGT	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	628
AjnI	CCWGG	4 cut(s)	576, 593, 777, 884
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	5 cut(s)	28, 238, 614, 705, 791
AluI	AGCT	5 cut(s)	28, 238, 614, 705, 791
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	3 cut(s)	445, 683, 893
AlwI	GGATC	3 cut(s)	367, 811, 874
AlwNI	CAGNNNCTG	2 cut(s)	274, 569
Ama87I	CYCGRG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	541
AoxI	GGCC	4 cut(s)	600, 882, 887, 907
ApeKI	GCWGC	3 cut(s)	195, 614, 826
ArsI	GACNNNNNNTTYG	4 cut(s)	14, 46, 278, 310
AseI	ATTAAT	1 cut(s)	48
AsiGI	ACCGGT	1 cut(s)	132
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	437, 853
AspS9I	GGNCC	2 cut(s)	42, 580
AsuC2I	CCSGG	1 cut(s)	324
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	42, 580
BalI	TGGCCA	2 cut(s)	602, 884
BbsI	GAAGAC	2 cut(s)	488, 565
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	207, 601, 838
BccI	CCATC	3 cut(s)	47, 611, 629
BceAI	ACGGC	1 cut(s)	874
BciT130I	CCWGG	4 cut(s)	578, 595, 779, 886
BclI	TGATCA	2 cut(s)	300, 501
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	3 cut(s)	445, 683, 893
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	2 cut(s)	507, 861
BfuAI	ACCTGC	1 cut(s)	661
BglI	GCCNNNNNGGC	1 cut(s)	915
BisI	GCNGC	4 cut(s)	196, 615, 824, 827
BlsI	GCNGC	4 cut(s)	197, 616, 825, 828
Bme1390I	CCNGG	5 cut(s)	324, 578, 595, 779, 886
Bme18I	GGWCC	2 cut(s)	42, 580
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	42, 580
BmiI	GGNNCC	4 cut(s)	181, 225, 321, 796
BmrFI	CCNGG	5 cut(s)	324, 578, 595, 779, 886
BmrI	ACTGGG	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	360
BpiI	GAAGAC	2 cut(s)	488, 565
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	815
BsaI	GGTCTC	2 cut(s)	445, 893
BsaJI	CCNNGG	3 cut(s)	183, 593, 778
BsaWI	WCCGGW	2 cut(s)	132, 541
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 853, 883
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 594
Bse118I	RCCGGY	2 cut(s)	113, 132
Bse1I	ACTGG	3 cut(s)	164, 355, 919
Bse3DI	GCAATG	2 cut(s)	279, 853
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	4 cut(s)	578, 595, 779, 886
BseDI	CCNNGG	3 cut(s)	183, 593, 778
BseGI	GGATG	6 cut(s)	332, 456, 550, 603, 775, 808
BseLI	CCNNNNNNNGG	2 cut(s)	240, 594
BseMI	GCAATG	2 cut(s)	279, 853
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	3 cut(s)	164, 355, 919
BseXI	GCAGC	3 cut(s)	207, 601, 838
BsgI	GTGCAG	1 cut(s)	913
Bsh1236I	CGCG	2 cut(s)	435, 437
BshFI	GGCC	4 cut(s)	602, 884, 889, 909
BshTI	ACCGGT	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	4 cut(s)	114, 133, 323, 542
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	240, 594
BsmAI	GTCTC	3 cut(s)	445, 683, 893
BsmFI	GGGAC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	4 cut(s)	602, 884, 889, 909
Bso31I	GGTCTC	2 cut(s)	445, 893
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	541
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	6 cut(s)	300, 359, 501, 803, 830, 866
BspACI	CCGC	4 cut(s)	204, 284, 437, 823
BspANI	GGCC	4 cut(s)	602, 884, 889, 909
BspCNI	CTCAG	1 cut(s)	280
BspEI	TCCGGA	1 cut(s)	541
BspFNI	CGCG	2 cut(s)	435, 437
BspLI	GGNNCC	4 cut(s)	181, 225, 321, 796
BspMI	ACCTGC	1 cut(s)	661
BspPI	GGATC	3 cut(s)	367, 811, 874
BspTNI	GGTCTC	2 cut(s)	445, 893
BsrDI	GCAATG	2 cut(s)	279, 853
BsrFI	RCCGGY	2 cut(s)	113, 132
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	164, 355, 919
BssAI	RCCGGY	2 cut(s)	113, 132
BssECI	CCNNGG	3 cut(s)	183, 593, 778
BssMI	GATC	6 cut(s)	300, 359, 501, 803, 830, 866
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	4 cut(s)	578, 595, 779, 886
Bst4CI	ACNGT	2 cut(s)	508, 877
BstAUI	TGTACA	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	815
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	1 cut(s)	267
BstF5I	GGATG	6 cut(s)	332, 456, 550, 603, 775, 808
BstFNI	CGCG	2 cut(s)	435, 437
BstHHI	GCGC	2 cut(s)	437, 853
BstKTI	GATC	6 cut(s)	303, 362, 504, 806, 833, 869
BstMAI	GTCTC	3 cut(s)	445, 683, 893
BstMBI	GATC	6 cut(s)	300, 359, 501, 803, 830, 866
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 443, 915
BstNI	CCWGG	4 cut(s)	578, 595, 779, 886
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	5 cut(s)	322, 576, 593, 777, 884
BstSFI	CTRYAG	2 cut(s)	507, 861
BstUI	CGCG	2 cut(s)	435, 437
BstV1I	GCAGC	3 cut(s)	207, 601, 838
BstV2I	GAAGAC	2 cut(s)	488, 565
BstX2I	RGATCY	3 cut(s)	359, 803, 866
BstXI	CCANNNNNNTGG	1 cut(s)	880
BstYI	RGATCY	3 cut(s)	359, 803, 866
BsuRI	GGCC	4 cut(s)	602, 884, 889, 909
BtsCI	GGATG	6 cut(s)	332, 456, 550, 603, 775, 808
BtsI	GCAGTG	1 cut(s)	901
BtsIMutI	CAGTG	4 cut(s)	504, 873, 901, 912
BveI	ACCTGC	1 cut(s)	661
Cac8I	GCNNGC	1 cut(s)	600
CaiI	CAGNNNCTG	2 cut(s)	274, 569
CfoI	GCGC	2 cut(s)	437, 853
Cfr10I	RCCGGY	2 cut(s)	113, 132
Cfr13I	GGNCC	2 cut(s)	42, 580
CseI	GACGC	1 cut(s)	672
Csp6I	GTAC	1 cut(s)	277
CspAI	ACCGGT	1 cut(s)	132
CviAII	CATG	4 cut(s)	304, 404, 425, 880
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	6 cut(s)	302, 361, 503, 805, 832, 868
DpnII	GATC	6 cut(s)	300, 359, 501, 803, 830, 866
DrdI	GACNNNNNNGTC	1 cut(s)	697
DseDI	GACNNNNNNGTC	1 cut(s)	697
EaeI	YGGCCR	2 cut(s)	600, 882
EciI	GGCGGA	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	183
Eco31I	GGTCTC	2 cut(s)	445, 893
Eco47I	GGWCC	2 cut(s)	42, 580
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	233
EcoRII	CCWGG	4 cut(s)	576, 593, 777, 884
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	4 cut(s)	307, 407, 428, 883
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	4 cut(s)	303, 403, 424, 879
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	2 cut(s)	300, 501
Fnu4HI	GCNGC	4 cut(s)	196, 615, 824, 827
FokI	GGATG	6 cut(s)	339, 463, 557, 590, 782, 795
Fsp4HI	GCNGC	4 cut(s)	196, 615, 824, 827
FspBI	CTAG	1 cut(s)	447
GlaI	GCGC	2 cut(s)	436, 852
GluI	GCNGC	4 cut(s)	196, 615, 824, 827
HaeIII	GGCC	4 cut(s)	602, 884, 889, 909
HapII	CCGG	4 cut(s)	114, 133, 323, 542
HgaI	GACGC	1 cut(s)	672
HhaI	GCGC	2 cut(s)	437, 853
Hin1II	CATG	4 cut(s)	307, 407, 428, 883
Hin6I	GCGC	2 cut(s)	435, 851
HinP1I	GCGC	2 cut(s)	435, 851
HindIII	AAGCTT	1 cut(s)	703
HinfI	GANTC	7 cut(s)	229, 265, 271, 341, 566, 730, 936
HpaII	CCGG	4 cut(s)	114, 133, 323, 542
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	6 cut(s)	18, 157, 228, 270, 688, 755
Hpy188III	TCNNGA	4 cut(s)	233, 338, 542, 555
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	7 cut(s)	88, 527, 552, 618, 661, 746, 833
HpyCH4III	ACNGT	2 cut(s)	508, 877
HpyCH4IV	ACGT	4 cut(s)	413, 498, 722, 814
HpyCH4V	TGCA	4 cut(s)	380, 676, 894, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 443, 915
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	4 cut(s)	413, 498, 722, 814
Hsp92II	CATG	4 cut(s)	307, 407, 428, 883
HspAI	GCGC	2 cut(s)	435, 851
Kpn2I	TCCGGA	1 cut(s)	541
Ksp22I	TGATCA	2 cut(s)	300, 501
Kzo9I	GATC	6 cut(s)	300, 359, 501, 803, 830, 866
LmnI	GCTCC	3 cut(s)	229, 397, 653
Lsp1109I	GCAGC	3 cut(s)	207, 601, 838
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	4 cut(s)	413, 498, 722, 814
MalI	GATC	6 cut(s)	302, 361, 503, 805, 832, 868
MboI	GATC	6 cut(s)	300, 359, 501, 803, 830, 866
MboII	GAAGA	2 cut(s)	493, 565
MflI	RGATCY	3 cut(s)	359, 803, 866
MhlI	GDGCHC	1 cut(s)	126
MlsI	TGGCCA	2 cut(s)	602, 884
MluCI	AATT	1 cut(s)	764
MluNI	TGGCCA	2 cut(s)	602, 884
MlyI	GAGTC	4 cut(s)	223, 259, 350, 930
MmeI	TCCRAC	3 cut(s)	41, 251, 781
MnlI	CCTC	3 cut(s)	463, 690, 899
Mox20I	TGGCCA	2 cut(s)	602, 884
MroI	TCCGGA	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	537
MscI	TGGCCA	2 cut(s)	602, 884
MseI	TTAA	5 cut(s)	12, 48, 147, 254, 491
MslI	CAYNNNNRTG	1 cut(s)	878
Msp20I	TGGCCA	2 cut(s)	602, 884
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	4 cut(s)	114, 133, 323, 542
MspR9I	CCNGG	5 cut(s)	324, 578, 595, 779, 886
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	4 cut(s)	578, 595, 779, 886
MvnI	CGCG	2 cut(s)	435, 437
MwoI	GCNNNNNNNGC	3 cut(s)	201, 443, 915
NciI	CCSGG	1 cut(s)	324
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	6 cut(s)	300, 359, 501, 803, 830, 866
NlaIII	CATG	4 cut(s)	307, 407, 428, 883
NlaIV	GGNNCC	4 cut(s)	181, 225, 321, 796
NspI	RCATGY	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	661
PciI	ACATGT	1 cut(s)	403
PctI	GAATGC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	3 cut(s)	271, 566, 730
PfoI	TCCNGGA	2 cut(s)	322, 576
PinAI	ACCGGT	1 cut(s)	132
PkrI	GCNGC	4 cut(s)	197, 616, 825, 828
PleI	GAGTC	4 cut(s)	223, 259, 349, 930
PpsI	GAGTC	4 cut(s)	223, 259, 349, 930
Ppu21I	YACGTR	1 cut(s)	815
PscI	ACATGT	1 cut(s)	403
PshBI	ATTAAT	1 cut(s)	48
Psp6I	CCWGG	4 cut(s)	576, 593, 777, 884
PspGI	CCWGG	4 cut(s)	576, 593, 777, 884
PspN4I	GGNNCC	4 cut(s)	181, 225, 321, 796
PspPI	GGNCC	2 cut(s)	42, 580
PstNI	CAGNNNCTG	2 cut(s)	274, 569
PsuI	RGATCY	3 cut(s)	359, 803, 866
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	878
SaqAI	TTAA	5 cut(s)	12, 48, 147, 254, 491
SatI	GCNGC	4 cut(s)	196, 615, 824, 827
Sau3AI	GATC	6 cut(s)	300, 359, 501, 803, 830, 866
Sau96I	GGNCC	2 cut(s)	42, 580
SchI	GAGTC	4 cut(s)	223, 259, 350, 930
ScrFI	CCNGG	5 cut(s)	324, 578, 595, 779, 886
SduI	GDGCHC	1 cut(s)	126
SfcI	CTRYAG	2 cut(s)	507, 861
SinI	GGWCC	2 cut(s)	42, 580
SmiMI	CAYNNNNRTG	1 cut(s)	878
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	764
SsiI	CCGC	4 cut(s)	204, 284, 437, 823
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	5 cut(s)	322, 576, 593, 777, 884
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	508, 877
TaiI	ACGT	4 cut(s)	416, 501, 725, 817
TaqI	TCGA	1 cut(s)	126
TaqII	GACCGA	1 cut(s)	30
TasI	AATT	1 cut(s)	764
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	1 cut(s)	826
TfiI	GAWTC	3 cut(s)	271, 566, 730
Tru1I	TTAA	5 cut(s)	12, 48, 147, 254, 491
Tru9I	TTAA	5 cut(s)	12, 48, 147, 254, 491
TscAI	CASTG	4 cut(s)	511, 880, 901, 919
TseI	GCWGC	3 cut(s)	195, 614, 826
TspDTI	ATGAA	4 cut(s)	107, 441, 762, 801
TspGWI	ACGGA	2 cut(s)	725, 787
TspRI	CASTG	4 cut(s)	511, 880, 901, 919
VpaK11BI	GGWCC	2 cut(s)	42, 580
VspI	ATTAAT	1 cut(s)	48
XceI	RCATGY	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.