Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007871

Physical Location & Seq

Genomic Coordinates Reverse (-)

25949724 .. 25952706

Gene Structure 2983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G287900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTTGCCCATTGATTCAACCAAGAAGTTATCTTTTACTCGCTGTATTCGTGATGGAGATTTGGTTATTGTCTATGAGAGGTATGACAACATGAAAGCTATTAAAGTATGTGATGGTTCTGTACTCGAAAATCGGTTTGGCGTGTTTAAACATTCAGACTGGGTAGGAAAGCAATTTGGTTCCAAGGTTTTCAGCACCAAGGGTGGATTTGTTTACTTGTTAGCTCCTACTCCTGAACTGTGGACTTTGGTTCTAAGCCACAGGACTCAGATTCTCTATATTGCGGACATTAGCTTTGTAATCATGTTCTTGGAAATAGTTCCTGGCTGTTTGGTTCTTGAGTCAGGGACTGGAAGTGGATCTTTAACTACATCACTTGCAAGGGCTGTAGCTCCTAAAGGACATGTCTATACATTTGATTTCCATGAGCAAAGGGCGGTCTCTGCTAGGGAGGATTTTGAGAAGACGGGATTAAGCAACTTGGTCACTGTAGGAGTTAGAGATATTCAGGGTGAAGGATTTCCAGATGAACTTTCTGGGATGGCAGATTCTGTCTTCCTGGACCTACCCCAACCCTGGTTGGCCATCCCATCAGCTGGGAAAATGCTGAAACAAGATGGGATGTTATGCTCTTTCTCCCCATGTATTGAGCAGGTGGAACGAGCGTCAGAGACTATGAGATCAAGCTTTACAGATATAAGGACATTTGAGATACTCCTTCGGACATATGAAGTTCGAGAAGGGAAATTGGATGACTTCCAGGGTGACGAAGCTGGTTCTCTTGGATCTCTTCCACGCAAAAGGCGGCAGCGATCAAATGAAGGAAGCAATGTGCGAGAAACTACTGGTCCTCCCACAGTCATGGCTAGGCCGTGCAGCGAGGCCAAAGGTCACACTGGCTATTTGACATTTGCAAGACTTAAATGCCTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0031515 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061953 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCD14

Protein Analysis

312

Amino Acids

34.5

Weight (kDa)

6.54

Isoelectric Point (pI)

32.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14600
fragaria_vesca	FvH4_6g51011 FvH4_6g51011 FvH4_6g51011
malus_domestica	MD09G1029500.v1.1 MD17G1031500.v1.1
prunus_persica	Prupe.3G287900_v2.0.a1
pyrus_communis	pycom111g02350 pycom17g02900
rosa_chinensis	RchiOBHm_Chr2g0172551
rosa_laevigata	RLG00000002839 RLG00000016014 RLG00000021671 RLG00000022115
rosa_multiflora	Rmu_sc0000912.1_g000006
rosa_roxburghii	Rroxscaffold_2G00079770
rosa_rugosa	Rorug02G0559800
rosa_samantha	Rh2AG635900 Rh2BG649300 Rh2CG616100 Rh2DG663700 Rh3AG202500 Rh3DG228000
rosa_wichuraiana	Rw2G052610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	1 cut(s)	643
AccB7I	CCANNNNNTGG	1 cut(s)	596
AciI	CCGC	3 cut(s)	284, 437, 805
AclWI	GGATC	2 cut(s)	367, 793
AcoI	YGGCCR	1 cut(s)	582
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	576, 596
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	1 cut(s)	18
AjnI	CCWGG	4 cut(s)	322, 558, 575, 759
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	7 cut(s)	98, 224, 294, 392, 596, 687, 773
AluI	AGCT	7 cut(s)	98, 224, 294, 392, 596, 687, 773
Alw26I	GTCTC	2 cut(s)	445, 665
AlwI	GGATC	2 cut(s)	367, 793
AlwNI	CAGNNNCTG	2 cut(s)	350, 551
AoxI	GGCC	3 cut(s)	582, 869, 882
ApeKI	GCWGC	2 cut(s)	808, 876
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
Asp700I	GAANNNNTTC	2 cut(s)	318, 519
AspS9I	GGNCC	2 cut(s)	562, 848
AsuHPI	GGTGA	2 cut(s)	524, 776
AvaII	GGWCC	2 cut(s)	562, 848
BalI	TGGCCA	1 cut(s)	584
BbsI	GAAGAC	2 cut(s)	470, 547
BbvI	GCAGC	2 cut(s)	820, 888
BccI	CCATC	6 cut(s)	47, 107, 535, 593, 598, 611
BceAI	ACGGC	1 cut(s)	856
BciT130I	CCWGG	4 cut(s)	324, 560, 577, 761
BcoDI	GTCTC	2 cut(s)	445, 665
BfaI	CTAG	2 cut(s)	447, 867
BfmI	CTRYAG	2 cut(s)	387, 489
BfuAI	ACCTGC	1 cut(s)	643
BisI	GCNGC	3 cut(s)	806, 809, 877
BlsI	GCNGC	3 cut(s)	807, 810, 878
Bme1390I	CCNGG	4 cut(s)	324, 560, 577, 761
Bme18I	GGWCC	2 cut(s)	562, 848
BmgT120I	GGNCC	2 cut(s)	562, 848
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	4 cut(s)	324, 560, 577, 761
BmrI	ACTGGG	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	2 cut(s)	470, 547
BpuEI	CTTGAG	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	4 cut(s)	183, 198, 575, 760
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 835, 865
Bsc4I	CCNNNNNNNGG	2 cut(s)	576, 596
Bse1I	ACTGG	4 cut(s)	164, 355, 850, 901
Bse3DI	GCAATG	1 cut(s)	835
BseBI	CCWGG	4 cut(s)	324, 560, 577, 761
BseDI	CCNNGG	4 cut(s)	183, 198, 575, 760
BseGI	GGATG	4 cut(s)	546, 585, 627, 757
BseLI	CCNNNNNNNGG	2 cut(s)	576, 596
BseMI	GCAATG	1 cut(s)	835
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	4 cut(s)	164, 355, 850, 901
BseXI	GCAGC	2 cut(s)	820, 888
BseYI	CCCAGC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	895
BshFI	GGCC	3 cut(s)	584, 871, 884
BslFI	GGGAC	1 cut(s)	361
BslI	CCNNNNNNNGG	2 cut(s)	576, 596
BsmAI	GTCTC	2 cut(s)	445, 665
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	3 cut(s)	584, 871, 884
Bso31I	GGTCTC	1 cut(s)	445
Bsp143I	GATC	4 cut(s)	359, 680, 785, 812
BspACI	CCGC	3 cut(s)	284, 437, 805
BspANI	GGCC	3 cut(s)	584, 871, 884
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	2 cut(s)	367, 793
BspTNI	GGTCTC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	835
BsrI	ACTGG	4 cut(s)	164, 355, 850, 901
BssECI	CCNNGG	4 cut(s)	183, 198, 575, 760
BssMI	GATC	4 cut(s)	359, 680, 785, 812
BssT1I	CCWWGG	2 cut(s)	183, 198
Bst2UI	CCWGG	4 cut(s)	324, 560, 577, 761
Bst4CI	ACNGT	3 cut(s)	240, 490, 859
Bst6I	CTCTTC	1 cut(s)	795
BstDEI	CTNAG	2 cut(s)	254, 267
BstF5I	GGATG	4 cut(s)	546, 585, 627, 757
BstKTI	GATC	4 cut(s)	362, 683, 788, 815
BstMAI	GTCTC	2 cut(s)	445, 665
BstMBI	GATC	4 cut(s)	359, 680, 785, 812
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	4 cut(s)	324, 560, 577, 761
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	4 cut(s)	322, 558, 575, 759
BstSFI	CTRYAG	2 cut(s)	387, 489
BstV1I	GCAGC	2 cut(s)	820, 888
BstV2I	GAAGAC	2 cut(s)	470, 547
BstX2I	RGATCY	2 cut(s)	359, 785
BstXI	CCANNNNNNTGG	1 cut(s)	862
BstYI	RGATCY	2 cut(s)	359, 785
BsuRI	GGCC	3 cut(s)	584, 871, 884
BtsCI	GGATG	4 cut(s)	546, 585, 627, 757
BtsIMutI	CAGTG	2 cut(s)	486, 894
BveI	ACCTGC	1 cut(s)	643
CaiI	CAGNNNCTG	2 cut(s)	350, 551
Cfr13I	GGNCC	2 cut(s)	562, 848
CseI	GACGC	1 cut(s)	654
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	6 cut(s)	91, 304, 404, 425, 642, 862
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	2 cut(s)	254, 267
DpnI	GATC	4 cut(s)	361, 682, 787, 814
DpnII	GATC	4 cut(s)	359, 680, 785, 812
DraI	TTTAAA	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
Eco130I	CCWWGG	2 cut(s)	183, 198
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	562, 848
EcoRII	CCWGG	4 cut(s)	322, 558, 575, 759
EcoT14I	CCWWGG	2 cut(s)	183, 198
ErhI	CCWWGG	2 cut(s)	183, 198
FaeI	CATG	6 cut(s)	94, 307, 407, 428, 645, 865
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	6 cut(s)	90, 303, 403, 424, 641, 861
FauNDI	CATATG	1 cut(s)	727
Fnu4HI	GCNGC	3 cut(s)	806, 809, 877
FokI	GGATG	4 cut(s)	553, 572, 634, 764
Fsp4HI	GCNGC	3 cut(s)	806, 809, 877
FspBI	CTAG	2 cut(s)	447, 867
GluI	GCNGC	3 cut(s)	806, 809, 877
GsaI	CCCAGC	1 cut(s)	600
HaeIII	GGCC	3 cut(s)	584, 871, 884
HgaI	GACGC	1 cut(s)	654
Hin1II	CATG	6 cut(s)	94, 307, 407, 428, 645, 865
HindIII	AAGCTT	1 cut(s)	685
HinfI	GANTC	5 cut(s)	14, 265, 271, 341, 548
HphI	GGTGA	2 cut(s)	524, 776
Hpy166II	GTNNAC	2 cut(s)	214, 243
Hpy188I	TCNGA	4 cut(s)	157, 270, 670, 723
Hpy188III	TCNNGA	5 cut(s)	50, 233, 338, 524, 737
Hpy8I	GTNNAC	2 cut(s)	214, 243
HpyAV	CCTTC	4 cut(s)	509, 728, 734, 815
HpyCH4III	ACNGT	3 cut(s)	240, 490, 859
HpyCH4V	TGCA	3 cut(s)	380, 876, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	2 cut(s)	254, 267
Hsp92II	CATG	6 cut(s)	94, 307, 407, 428, 645, 865
Kzo9I	GATC	4 cut(s)	359, 680, 785, 812
LmnI	GCTCC	2 cut(s)	229, 397
Lsp1109I	GCAGC	2 cut(s)	820, 888
MaeI	CTAG	2 cut(s)	447, 867
MaeIII	GTNAC	3 cut(s)	484, 764, 890
MalI	GATC	4 cut(s)	361, 682, 787, 814
MboI	GATC	4 cut(s)	359, 680, 785, 812
MboII	GAAGA	3 cut(s)	475, 547, 782
MflI	RGATCY	2 cut(s)	359, 785
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	2 cut(s)	173, 746
MluNI	TGGCCA	1 cut(s)	584
MlyI	GAGTC	2 cut(s)	259, 350
MnlI	CCTC	4 cut(s)	72, 445, 861, 874
Mox20I	TGGCCA	1 cut(s)	584
MroXI	GAANNNNTTC	2 cut(s)	318, 519
MscI	TGGCCA	1 cut(s)	584
MseI	TTAA	5 cut(s)	102, 147, 365, 473, 921
MslI	CAYNNNNRTG	1 cut(s)	860
Msp20I	TGGCCA	1 cut(s)	584
MspA1I	CMGCKG	1 cut(s)	596
MspR9I	CCNGG	4 cut(s)	324, 560, 577, 761
MssI	GTTTAAAC	1 cut(s)	148
MvaI	CCWGG	4 cut(s)	324, 560, 577, 761
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	4 cut(s)	359, 680, 785, 812
NlaIII	CATG	6 cut(s)	94, 307, 407, 428, 645, 865
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	3 cut(s)	484, 764, 890
NspI	RCATGY	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	643
PciI	ACATGT	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PdmI	GAANNNNTTC	2 cut(s)	318, 519
PfeI	GAWTC	3 cut(s)	14, 271, 548
PflMI	CCANNNNNTGG	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	558
PkrI	GCNGC	3 cut(s)	807, 810, 878
PleI	GAGTC	2 cut(s)	259, 349
PmeI	GTTTAAAC	1 cut(s)	148
PpsI	GAGTC	2 cut(s)	259, 349
PscI	ACATGT	1 cut(s)	403
Psp6I	CCWGG	4 cut(s)	322, 558, 575, 759
PspFI	CCCAGC	1 cut(s)	596
PspGI	CCWGG	4 cut(s)	322, 558, 575, 759
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	562, 848
PstNI	CAGNNNCTG	2 cut(s)	350, 551
PsuI	RGATCY	2 cut(s)	359, 785
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	860
SaqAI	TTAA	5 cut(s)	102, 147, 365, 473, 921
SatI	GCNGC	3 cut(s)	806, 809, 877
Sau3AI	GATC	4 cut(s)	359, 680, 785, 812
Sau96I	GGNCC	2 cut(s)	562, 848
SchI	GAGTC	2 cut(s)	259, 350
ScrFI	CCNGG	4 cut(s)	324, 560, 577, 761
SfcI	CTRYAG	2 cut(s)	387, 489
SinI	GGWCC	2 cut(s)	562, 848
SmiMI	CAYNNNNRTG	1 cut(s)	860
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	173, 746
SsiI	CCGC	3 cut(s)	284, 437, 805
SspMI	CTAG	2 cut(s)	447, 867
StyD4I	CCNGG	4 cut(s)	322, 558, 575, 759
StyI	CCWWGG	2 cut(s)	183, 198
TaaI	ACNGT	3 cut(s)	240, 490, 859
TaqI	TCGA	2 cut(s)	126, 736
TasI	AATT	2 cut(s)	173, 746
TatI	WGTACW	1 cut(s)	121
TauI	GCSGC	1 cut(s)	808
TfiI	GAWTC	3 cut(s)	14, 271, 548
Tru1I	TTAA	5 cut(s)	102, 147, 365, 473, 921
Tru9I	TTAA	5 cut(s)	102, 147, 365, 473, 921
TscAI	CASTG	2 cut(s)	493, 901
TseFI	GTSAC	3 cut(s)	484, 764, 890
TseI	GCWGC	2 cut(s)	808, 876
Tsp45I	GTSAC	3 cut(s)	484, 764, 890
TspDTI	ATGAA	4 cut(s)	107, 543, 744, 834
TspRI	CASTG	2 cut(s)	493, 901
Van91I	CCANNNNNTGG	1 cut(s)	596
VpaK11BI	GGWCC	2 cut(s)	562, 848
XceI	RCATGY	1 cut(s)	407
XmnI	GAANNNNTTC	2 cut(s)	318, 519
XspI	CTAG	2 cut(s)	447, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.