Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007871

Physical Location & Seq

Genomic Coordinates Reverse (-)

86107767 .. 86109635

Gene Structure 1869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG635900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTTCCCCCATCGGCCCAATTCAAAGGCCCAAACTTTTGCAAAAGATTTTTTGAGGATGTTGCCTGTTGAATCTGCAAAGAAGAAGCTATCTTTCACAAGATGTATTCAAGATGGGGATTTGGTTATTGTGTATGAGAGATATGATAACATGAAGGCTGTTAAAGTGTGTGAGGGTTCTGTGCTTGAGAATCGGTTTGGTGTGTTTAAGCATTCGGATTGGATAGGGAAGCAATTTGGGTCCAAGGTTTTCAGCAGCAAAGGTGGATTTGTTTACTTGTTGGCTCCGACTCCAGAGCTATGGACTTTGGTTCTGAGTCACAGGACGCAGATTCTGTACATTGCTGATATTAGCTTTGTGATCATGTTCTTGGAGATAGTTCCTGGCTGTGTGGTTCTGGAGTCGGGGACTGGAAGTGGGTCCTTAACTACGTCACTTGCAAGGGCTGTAGCTCCTAAGGGACATGTGTATACATTTGATTTCCATGAGCAAAGGGCTGCCTCGGCTAGGGAGGACTTTGAAAAGACGGGGATAAGCAACACGGTCACAGTAGGAGTTAGAGATATTCAGGGTGAAGGTTTTCCAGATGAGTTTTCTGGGAGGGCAGATTCTGTCTTCCTGGACCTTCCCCAACCCTGGCTAGCCATCCCTTCAGTTGAGAAAATGTTAAAACAAGATGGGATTGTATGCTCCTTTTCCCCGTGCATTGAGCAGGTGCAGCGAGCATCGGAGACTTTGAGATCAAAGTTTACAGATATAAGGACATTTGAGATACTCCTTCGCACATATGAGGTTCGAGAAGGGAAAATGGATAGCCTCCAGGTCGAGGAAAGTGGTTCTGTTGGATCTCTACCATGTAAGAGGCGGCAACGATCGAGTGAAGGAAGTAATGAGCAGGAAACTACAAGCGCTTCCGTAGTCATGGCTAGGCCATGTAGTGAGGCCAAAGGCCACACTGGCTATTTGACATTTGCAAGGCTCAAATGCCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0031515 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061953 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCD14

Protein Analysis

331

Amino Acids

36.87

Weight (kDa)

8.06

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCD14	PF08704	89 - 326	3.8e-101	tRNA methyltransferase complex GCD14 subunit
PCMT	PF01135	118 - 186	6.5e-06	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	128 - 250	1.4e-10	Methyltransferase domain
Methyltransf_25	PF13649	132 - 207	3e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14600
fragaria_vesca	FvH4_6g51011 FvH4_6g51011 FvH4_6g51011
malus_domestica	MD09G1029500.v1.1 MD17G1031500.v1.1
prunus_persica	Prupe.3G287900_v2.0.a1
pyrus_communis	pycom111g02350 pycom17g02900
rosa_chinensis	RchiOBHm_Chr2g0172551
rosa_laevigata	RLG00000002839 RLG00000016014 RLG00000021671 RLG00000022115
rosa_multiflora	Rmu_sc0000912.1_g000006
rosa_roxburghii	Rroxscaffold_2G00079770
rosa_rugosa	Rorug02G0559800
rosa_samantha	Rh2AG635900 Rh2BG649300 Rh2CG616100 Rh2DG663700 Rh3AG202500 Rh3DG228000
rosa_wichuraiana	Rw2G052610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	703
Acc36I	ACCTGC	1 cut(s)	703
AccI	GTMKAC	1 cut(s)	470
AciI	CCGC	1 cut(s)	865
AclWI	GGATC	1 cut(s)	853
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	1 cut(s)	338
AfeI	AGCGCT	1 cut(s)	910
AfiI	CCNNNNNNNGG	3 cut(s)	507, 636, 826
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	4 cut(s)	24, 71, 110, 521
AjnI	CCWGG	4 cut(s)	382, 618, 635, 819
AluBI	AGCT	4 cut(s)	88, 298, 354, 452
AluI	AGCT	4 cut(s)	88, 298, 354, 452
Alw26I	GTCTC	1 cut(s)	725
AlwI	GGATC	1 cut(s)	853
AlwNI	CAGNNNCTG	2 cut(s)	334, 611
Aor51HI	AGCGCT	1 cut(s)	910
AoxI	GGCC	5 cut(s)	14, 27, 929, 942, 949
ApeKI	GCWGC	3 cut(s)	255, 497, 718
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	911
AspS9I	GGNCC	5 cut(s)	15, 28, 240, 420, 622
AsuHPI	GGTGA	1 cut(s)	584
AsuNHI	GCTAGC	1 cut(s)	640
AvaII	GGWCC	3 cut(s)	240, 420, 622
AxyI	CCTNAGG	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	607
BbvI	GCAGC	3 cut(s)	267, 484, 730
BccI	CCATC	4 cut(s)	18, 107, 653, 671
BciT130I	CCWGG	4 cut(s)	384, 620, 637, 821
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	725
BfaI	CTAG	3 cut(s)	507, 641, 927
BfmI	CTRYAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	912
BfuAI	ACCTGC	1 cut(s)	703
BglI	GCCNNNNNGGC	1 cut(s)	957
BisI	GCNGC	4 cut(s)	256, 498, 719, 866
BlsI	GCNGC	4 cut(s)	257, 499, 720, 867
Bme1390I	CCNGG	4 cut(s)	384, 620, 637, 821
Bme18I	GGWCC	3 cut(s)	240, 420, 622
BmgT120I	GGNCC	5 cut(s)	15, 28, 240, 420, 622
BmiI	GGNNCC	3 cut(s)	241, 285, 421
BmrFI	CCNGG	4 cut(s)	384, 620, 637, 821
BmsI	GCATC	1 cut(s)	734
BmtI	GCTAGC	1 cut(s)	644
BpiI	GAAGAC	1 cut(s)	607
BpmI	CTGGAG	3 cut(s)	276, 419, 803
BpuEI	CTTGAG	1 cut(s)	206
BsaJI	CCNNGG	3 cut(s)	243, 501, 635
Bsc4I	CCNNNNNNNGG	3 cut(s)	507, 636, 826
Bse1I	ACTGG	2 cut(s)	415, 961
Bse21I	CCTNAGG	1 cut(s)	456
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	4 cut(s)	384, 620, 637, 821
BseDI	CCNNGG	3 cut(s)	243, 501, 635
BseGI	GGATG	2 cut(s)	63, 645
BseLI	CCNNNNNNNGG	3 cut(s)	507, 636, 826
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	2 cut(s)	415, 961
BseXI	GCAGC	3 cut(s)	267, 484, 730
BsgI	GTGCAG	1 cut(s)	737
Bsh1285I	CGRYCG	1 cut(s)	875
BshFI	GGCC	5 cut(s)	16, 29, 931, 944, 951
BsiEI	CGRYCG	1 cut(s)	875
BslFI	GGGAC	2 cut(s)	421, 474
BslI	CCNNNNNNNGG	3 cut(s)	507, 636, 826
BsmAI	GTCTC	1 cut(s)	725
BsmFI	GGGAC	2 cut(s)	421, 474
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	5 cut(s)	16, 29, 931, 944, 951
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	4 cut(s)	360, 740, 845, 872
BspACI	CCGC	1 cut(s)	865
BspANI	GGCC	5 cut(s)	16, 29, 931, 944, 951
BspCNI	CTCAG	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	241, 285, 421
BspMI	ACCTGC	1 cut(s)	703
BspOI	GCTAGC	1 cut(s)	644
BspPI	GGATC	1 cut(s)	853
BsrDI	GCAATG	1 cut(s)	339
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	415, 961
BssECI	CCNNGG	3 cut(s)	243, 501, 635
BssMI	GATC	4 cut(s)	360, 740, 845, 872
BssNAI	GTATAC	1 cut(s)	471
BssT1I	CCWWGG	1 cut(s)	243
Bst1107I	GTATAC	1 cut(s)	471
Bst2UI	CCWGG	4 cut(s)	384, 620, 637, 821
Bst4CI	ACNGT	2 cut(s)	544, 550
BstAUI	TGTACA	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	642, 723
BstDEI	CTNAG	2 cut(s)	314, 456
BstENI	CCTNNNNNAGG	1 cut(s)	505
BstF5I	GGATG	2 cut(s)	63, 645
BstH2I	RGCGCY	1 cut(s)	912
BstHHI	GCGC	1 cut(s)	911
BstKTI	GATC	4 cut(s)	363, 743, 848, 875
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	4 cut(s)	360, 740, 845, 872
BstMCI	CGRYCG	1 cut(s)	875
BstMWI	GCNNNNNNNGC	3 cut(s)	503, 718, 957
BstNI	CCWGG	4 cut(s)	384, 620, 637, 821
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	4 cut(s)	382, 618, 635, 819
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	3 cut(s)	267, 484, 730
BstV2I	GAAGAC	1 cut(s)	607
BstX2I	RGATCY	1 cut(s)	845
BstXI	CCANNNNNNTGG	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	845
BstZ17I	GTATAC	1 cut(s)	471
Bsu36I	CCTNAGG	1 cut(s)	456
BsuRI	GGCC	5 cut(s)	16, 29, 931, 944, 951
BtsCI	GGATG	2 cut(s)	63, 645
BtsIMutI	CAGTG	1 cut(s)	954
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	2 cut(s)	642, 723
CaiI	CAGNNNCTG	2 cut(s)	334, 611
CfoI	GCGC	1 cut(s)	911
Cfr13I	GGNCC	5 cut(s)	15, 28, 240, 420, 622
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	7 cut(s)	151, 364, 464, 485, 855, 922, 933
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	314, 456
DpnI	GATC	4 cut(s)	362, 742, 847, 874
DpnII	GATC	4 cut(s)	360, 740, 845, 872
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	3 cut(s)	240, 420, 622
Eco47III	AGCGCT	1 cut(s)	910
Eco57I	CTGAAG	1 cut(s)	636
Eco81I	CCTNAGG	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	505
EcoO109I	RGGNCCY	1 cut(s)	420
EcoRII	CCWGG	4 cut(s)	382, 618, 635, 819
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	7 cut(s)	154, 367, 467, 488, 858, 925, 936
FaqI	GGGAC	2 cut(s)	421, 474
FatI	CATG	7 cut(s)	150, 363, 463, 484, 854, 921, 932
FauNDI	CATATG	1 cut(s)	787
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	4 cut(s)	256, 498, 719, 866
FokI	GGATG	2 cut(s)	70, 632
Fsp4HI	GCNGC	4 cut(s)	256, 498, 719, 866
FspBI	CTAG	3 cut(s)	507, 641, 927
GlaI	GCGC	1 cut(s)	910
GluI	GCNGC	4 cut(s)	256, 498, 719, 866
GsuI	CTGGAG	3 cut(s)	276, 419, 803
HaeII	RGCGCY	1 cut(s)	912
HaeIII	GGCC	5 cut(s)	16, 29, 931, 944, 951
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	1 cut(s)	911
Hin1II	CATG	7 cut(s)	154, 367, 467, 488, 858, 925, 936
Hin6I	GCGC	1 cut(s)	909
HinP1I	GCGC	1 cut(s)	909
HinfI	GANTC	7 cut(s)	71, 190, 289, 316, 331, 401, 608
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	3 cut(s)	274, 471, 750
Hpy188I	TCNGA	4 cut(s)	217, 288, 315, 730
Hpy188III	TCNNGA	5 cut(s)	110, 293, 398, 584, 797
Hpy8I	GTNNAC	3 cut(s)	274, 471, 750
HpyAV	CCTTC	7 cut(s)	148, 569, 635, 660, 788, 794, 875
HpyCH4III	ACNGT	2 cut(s)	544, 550
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	6 cut(s)	41, 77, 440, 705, 718, 974
HpyF10VI	GCNNNNNNNGC	3 cut(s)	503, 718, 957
HpyF3I	CTNAG	2 cut(s)	314, 456
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	7 cut(s)	154, 367, 467, 488, 858, 925, 936
HspAI	GCGC	1 cut(s)	909
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	360, 740, 845, 872
LmnI	GCTCC	3 cut(s)	289, 457, 695
Lsp1109I	GCAGC	3 cut(s)	267, 484, 730
LweI	GCATC	1 cut(s)	734
MaeI	CTAG	3 cut(s)	507, 641, 927
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	3 cut(s)	317, 432, 544
MalI	GATC	4 cut(s)	362, 742, 847, 874
MboI	GATC	4 cut(s)	360, 740, 845, 872
MboII	GAAGA	2 cut(s)	94, 607
MflI	RGATCY	1 cut(s)	845
MluCI	AATT	2 cut(s)	19, 233
MlyI	GAGTC	3 cut(s)	283, 325, 410
MmeI	TCCRAC	2 cut(s)	311, 823
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	4 cut(s)	162, 207, 425, 668
MspR9I	CCNGG	4 cut(s)	384, 620, 637, 821
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	4 cut(s)	384, 620, 637, 821
MwoI	GCNNNNNNNGC	3 cut(s)	503, 718, 957
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	4 cut(s)	360, 740, 845, 872
NheI	GCTAGC	1 cut(s)	640
NlaIII	CATG	7 cut(s)	154, 367, 467, 488, 858, 925, 936
NlaIV	GGNNCC	3 cut(s)	241, 285, 421
NmeAIII	GCCGAG	1 cut(s)	482
NmuCI	GTSAC	3 cut(s)	317, 432, 544
NspI	RCATGY	1 cut(s)	467
PaqCI	CACCTGC	1 cut(s)	703
PciI	ACATGT	1 cut(s)	463
PctI	GAATGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	4 cut(s)	71, 190, 331, 608
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	4 cut(s)	257, 499, 720, 867
Ple19I	CGATCG	1 cut(s)	875
PleI	GAGTC	3 cut(s)	283, 324, 409
PpsI	GAGTC	3 cut(s)	283, 324, 409
PpuMI	RGGWCCY	1 cut(s)	420
PscI	ACATGT	1 cut(s)	463
Psp5II	RGGWCCY	1 cut(s)	420
Psp6I	CCWGG	4 cut(s)	382, 618, 635, 819
PspGI	CCWGG	4 cut(s)	382, 618, 635, 819
PspN4I	GGNNCC	3 cut(s)	241, 285, 421
PspPI	GGNCC	5 cut(s)	15, 28, 240, 420, 622
PspPPI	RGGWCCY	1 cut(s)	420
PstNI	CAGNNNCTG	2 cut(s)	334, 611
PsuI	RGATCY	1 cut(s)	845
PvuI	CGATCG	1 cut(s)	875
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	4 cut(s)	162, 207, 425, 668
SatI	GCNGC	4 cut(s)	256, 498, 719, 866
Sau3AI	GATC	4 cut(s)	360, 740, 845, 872
Sau96I	GGNCC	5 cut(s)	15, 28, 240, 420, 622
SchI	GAGTC	3 cut(s)	283, 325, 410
ScrFI	CCNGG	4 cut(s)	384, 620, 637, 821
SfaNI	GCATC	1 cut(s)	734
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	3 cut(s)	240, 420, 622
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	19, 233
SsiI	CCGC	1 cut(s)	865
SspMI	CTAG	3 cut(s)	507, 641, 927
StyD4I	CCNGG	4 cut(s)	382, 618, 635, 819
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	544, 550
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	3 cut(s)	796, 825, 875
TasI	AATT	2 cut(s)	19, 233
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	1 cut(s)	868
TfiI	GAWTC	4 cut(s)	71, 190, 331, 608
Tru1I	TTAA	4 cut(s)	162, 207, 425, 668
Tru9I	TTAA	4 cut(s)	162, 207, 425, 668
TscAI	CASTG	1 cut(s)	961
TseFI	GTSAC	3 cut(s)	317, 432, 544
TseI	GCWGC	3 cut(s)	255, 497, 718
Tsp45I	GTSAC	3 cut(s)	317, 432, 544
TspDTI	ATGAA	2 cut(s)	167, 981
TspGWI	ACGGA	1 cut(s)	904
TspRI	CASTG	1 cut(s)	961
VpaK11BI	GGWCC	3 cut(s)	240, 420, 622
XagI	CCTNNNNNAGG	1 cut(s)	505
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	3 cut(s)	507, 641, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.