Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007871

Physical Location & Seq

Genomic Coordinates Reverse (-)

81044580 .. 81046448

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022115

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTTCCCCCATCGGCCCAATATAAAGGCCCAAACTTTTGCAAAATGTTTTGCTTCTTCTCTCTGTTCTTCAGTTTTCTTTGCAGCTTCTTTTGGTCTTCTTCTGCGTTTTTACTTTTTAGGGTTTAGGGCAACTGAAGAGATTTGGAGGATGTTGCCTGTTGAATCTGCAAAGAAGAAGCTATCTTTCAAAAGATGTATTCAAGATGGGGATTTGGTTATTGTGTATGAGAGATATGATAACATGAAAGCTGTTAAAGTGTGTGAGGGTTCTGTGCTTGAGAATCGGTTCGGTGTGTTTAAGCATTCGGATTGGATAGGGAAGCAATTCGGGTCCAAAGTTTTCAGCAGCAAAGGTGGATTTGTTTACTTGTTGGCTCCCACTCCTGAGCTTTGGACTTTGGTTCTGAGTCACAGGACTCAGATTCTATACATTGCTGATATTAGCTTTGTGATCATGTTCTTGGAGATAGTTCCTGGCTGTGTGGTTCTGGAGTCGGGGACTGGAAGTGGGTCTTTAACTACATCACTTGCAAGGGCTGTAGCTCCTAAGGGACATGTGTATACATTTGATTTCCATGAGCAAAGGGCGGCCTCGGCTAGGGAGGACTTTGAAAAGACGGGGATAAGCAACACAGTCACAGTAGGAGTTAGAGATATTCAGGGTGAAGGTTTTCCAGATGAGTTTTCTGGGAGGGCAGATTCTGTCTTCCTGGACCTTCCCCAACCCTGGCTAGCCATCCCTTCAGTTGAGAAAATGTTAAAACAAGATGGGATTGTATGCTCCTTTTCCCCGTGCATTGAGCAGGTGCAACGAGCATCGGAGACTTTGAGATCAAAGTTTACAGATATAAGGACATTTGAGATACTCCTTCGCACATACGAAGTTCGAGAAGGGAAAATGGATAGCTTCCAGGTCGAGGAAAGTGGTTCTGTTGGATCTCTACCATGTAAGAGGCGGCAACGATCGAGTGAAGGAAGTAATGAGCAGGAAACTACAAGTGCTCCCGTAGTCATGGCTAGGCCATGTACTGATGCCAAAGGCCACACTGGCTATTTGACATTTGCAAGGCTCAAATGCCTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0031515 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061953 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCD14

Protein Analysis

363

Amino Acids

40.47

Weight (kDa)

8.46

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCD14	PF08704	120 - 357	4.8e-100	tRNA methyltransferase complex GCD14 subunit
PCMT	PF01135	149 - 217	7.7e-06	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	159 - 280	1.8e-10	Methyltransferase domain
Methyltransf_25	PF13649	163 - 238	3.5e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14600
fragaria_vesca	FvH4_6g51011 FvH4_6g51011 FvH4_6g51011
malus_domestica	MD09G1029500.v1.1 MD17G1031500.v1.1
prunus_persica	Prupe.3G287900_v2.0.a1
pyrus_communis	pycom111g02350 pycom17g02900
rosa_chinensis	RchiOBHm_Chr2g0172551
rosa_laevigata	RLG00000002839 RLG00000016014 RLG00000021671 RLG00000022115
rosa_multiflora	Rmu_sc0000912.1_g000006
rosa_roxburghii	Rroxscaffold_2G00079770
rosa_rugosa	Rorug02G0559800
rosa_samantha	Rh2AG635900 Rh2BG649300 Rh2CG616100 Rh2DG663700 Rh3AG202500 Rh3DG228000
rosa_wichuraiana	Rw2G052610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	796
Acc36I	ACCTGC	1 cut(s)	796
AccI	GTMKAC	1 cut(s)	563
AciI	CCGC	2 cut(s)	590, 958
AclWI	GGATC	1 cut(s)	946
AcuI	CTGAAG	3 cut(s)	54, 156, 729
AfaI	GTAC	1 cut(s)	1030
AfiI	CCNNNNNNNGG	3 cut(s)	600, 729, 919
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	4 cut(s)	164, 190, 203, 614
AjnI	CCWGG	4 cut(s)	475, 711, 728, 912
AluBI	AGCT	7 cut(s)	86, 181, 251, 391, 447, 545, 909
AluI	AGCT	7 cut(s)	86, 181, 251, 391, 447, 545, 909
Alw21I	GWGCWC	1 cut(s)	1006
Alw26I	GTCTC	1 cut(s)	818
AlwI	GGATC	1 cut(s)	946
AlwNI	CAGNNNCTG	1 cut(s)	704
AoxI	GGCC	5 cut(s)	14, 27, 591, 1022, 1042
ApeKI	GCWGC	2 cut(s)	83, 348
Asp700I	GAANNNNTTC	3 cut(s)	287, 326, 672
AspS9I	GGNCC	4 cut(s)	15, 28, 333, 715
AsuHPI	GGTGA	1 cut(s)	677
AsuNHI	GCTAGC	1 cut(s)	733
AvaII	GGWCC	2 cut(s)	333, 715
AxyI	CCTNAGG	1 cut(s)	549
BbsI	GAAGAC	2 cut(s)	89, 700
Bbv12I	GWGCWC	1 cut(s)	1006
BbvI	GCAGC	2 cut(s)	95, 360
BccI	CCATC	4 cut(s)	18, 200, 746, 764
BciT130I	CCWGG	4 cut(s)	477, 713, 730, 914
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	818
BfaI	CTAG	3 cut(s)	600, 734, 1020
BfmI	CTRYAG	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	796
BglI	GCCNNNNNGGC	1 cut(s)	1050
BisI	GCNGC	4 cut(s)	84, 349, 591, 959
BlsI	GCNGC	4 cut(s)	85, 350, 592, 960
Bme1390I	CCNGG	4 cut(s)	477, 713, 730, 914
Bme18I	GGWCC	2 cut(s)	333, 715
BmgT120I	GGNCC	4 cut(s)	15, 28, 333, 715
BmiI	GGNNCC	2 cut(s)	334, 378
BmrFI	CCNGG	4 cut(s)	477, 713, 730, 914
BmsI	GCATC	2 cut(s)	827, 1024
BmtI	GCTAGC	1 cut(s)	737
BpiI	GAAGAC	2 cut(s)	89, 700
BpmI	CTGGAG	1 cut(s)	512
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	594, 728
BsaXI	ACNNNNNCTCC	2 cut(s)	988, 1018
Bsc4I	CCNNNNNNNGG	3 cut(s)	600, 729, 919
Bse1I	ACTGG	2 cut(s)	508, 1054
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	4 cut(s)	477, 713, 730, 914
BseDI	CCNNGG	2 cut(s)	594, 728
BseGI	GGATG	2 cut(s)	156, 738
BseLI	CCNNNNNNNGG	3 cut(s)	600, 729, 919
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	3 cut(s)	378, 398, 434
BseNI	ACTGG	2 cut(s)	508, 1054
BseXI	GCAGC	2 cut(s)	95, 360
Bsh1285I	CGRYCG	1 cut(s)	968
BshFI	GGCC	5 cut(s)	16, 29, 593, 1024, 1044
BsiEI	CGRYCG	1 cut(s)	968
BsiHKAI	GWGCWC	1 cut(s)	1006
BslFI	GGGAC	2 cut(s)	514, 567
BslI	CCNNNNNNNGG	3 cut(s)	600, 729, 919
BsmAI	GTCTC	1 cut(s)	818
BsmFI	GGGAC	2 cut(s)	514, 567
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	5 cut(s)	16, 29, 593, 1024, 1044
Bsp1286I	GDGCHC	1 cut(s)	1006
Bsp143I	GATC	4 cut(s)	453, 833, 938, 965
BspACI	CCGC	2 cut(s)	590, 958
BspANI	GGCC	5 cut(s)	16, 29, 593, 1024, 1044
BspCNI	CTCAG	3 cut(s)	379, 399, 433
BspLI	GGNNCC	2 cut(s)	334, 378
BspMI	ACCTGC	1 cut(s)	796
BspOI	GCTAGC	1 cut(s)	737
BspPI	GGATC	1 cut(s)	946
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	508, 1054
BssECI	CCNNGG	2 cut(s)	594, 728
BssMI	GATC	4 cut(s)	453, 833, 938, 965
BssNAI	GTATAC	1 cut(s)	564
Bst1107I	GTATAC	1 cut(s)	564
Bst2UI	CCWGG	4 cut(s)	477, 713, 730, 914
Bst4CI	ACNGT	2 cut(s)	637, 643
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	735
BstDEI	CTNAG	4 cut(s)	387, 407, 420, 549
BstENI	CCTNNNNNAGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	156, 738
BstKTI	GATC	4 cut(s)	456, 836, 941, 968
BstMAI	GTCTC	1 cut(s)	818
BstMBI	GATC	4 cut(s)	453, 833, 938, 965
BstMCI	CGRYCG	1 cut(s)	968
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 1050
BstNI	CCWGG	4 cut(s)	477, 713, 730, 914
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	4 cut(s)	475, 711, 728, 912
BstSFI	CTRYAG	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	95, 360
BstV2I	GAAGAC	2 cut(s)	89, 700
BstX2I	RGATCY	1 cut(s)	938
BstYI	RGATCY	1 cut(s)	938
BstZ17I	GTATAC	1 cut(s)	564
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	5 cut(s)	16, 29, 593, 1024, 1044
BtsCI	GGATG	2 cut(s)	156, 738
BtsIMutI	CAGTG	1 cut(s)	1047
BveI	ACCTGC	1 cut(s)	796
Cac8I	GCNNGC	1 cut(s)	735
CaiI	CAGNNNCTG	1 cut(s)	704
Cfr13I	GGNCC	4 cut(s)	15, 28, 333, 715
Csp6I	GTAC	1 cut(s)	1029
CviAII	CATG	7 cut(s)	244, 457, 557, 578, 948, 1015, 1026
CviQI	GTAC	1 cut(s)	1029
DdeI	CTNAG	4 cut(s)	387, 407, 420, 549
DpnI	GATC	4 cut(s)	455, 835, 940, 967
DpnII	GATC	4 cut(s)	453, 833, 938, 965
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	333, 715
Eco57I	CTGAAG	3 cut(s)	54, 156, 729
Eco81I	CCTNAGG	1 cut(s)	549
EcoNI	CCTNNNNNAGG	1 cut(s)	598
EcoRII	CCWGG	4 cut(s)	475, 711, 728, 912
FaeI	CATG	7 cut(s)	247, 460, 560, 581, 951, 1018, 1029
FalI	AAGNNNNNCTT	2 cut(s)	499, 531
FaqI	GGGAC	2 cut(s)	514, 567
FatI	CATG	7 cut(s)	243, 456, 556, 577, 947, 1014, 1025
FbaI	TGATCA	1 cut(s)	453
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	4 cut(s)	84, 349, 591, 959
FokI	GGATG	2 cut(s)	163, 725
Fsp4HI	GCNGC	4 cut(s)	84, 349, 591, 959
FspBI	CTAG	3 cut(s)	600, 734, 1020
GluI	GCNGC	4 cut(s)	84, 349, 591, 959
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	5 cut(s)	16, 29, 593, 1024, 1044
Hin1II	CATG	7 cut(s)	247, 460, 560, 581, 951, 1018, 1029
HinfI	GANTC	7 cut(s)	164, 283, 409, 418, 424, 494, 701
HphI	GGTGA	1 cut(s)	677
Hpy166II	GTNNAC	3 cut(s)	367, 564, 843
Hpy188I	TCNGA	4 cut(s)	310, 408, 423, 823
Hpy188III	TCNNGA	5 cut(s)	203, 386, 491, 677, 890
Hpy8I	GTNNAC	3 cut(s)	367, 564, 843
HpyAV	CCTTC	6 cut(s)	662, 728, 753, 881, 887, 968
HpyCH4III	ACNGT	2 cut(s)	637, 643
HpyCH4V	TGCA	7 cut(s)	41, 83, 170, 533, 798, 811, 1067
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 1050
HpyF3I	CTNAG	4 cut(s)	387, 407, 420, 549
Hsp92II	CATG	7 cut(s)	247, 460, 560, 581, 951, 1018, 1029
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	453, 833, 938, 965
LmnI	GCTCC	4 cut(s)	382, 550, 788, 1009
Lsp1109I	GCAGC	2 cut(s)	95, 360
LweI	GCATC	2 cut(s)	827, 1024
MaeI	CTAG	3 cut(s)	600, 734, 1020
MaeIII	GTNAC	2 cut(s)	410, 637
MalI	GATC	4 cut(s)	455, 835, 940, 967
MboI	GATC	4 cut(s)	453, 833, 938, 965
MboII	GAAGA	7 cut(s)	48, 60, 89, 92, 149, 187, 700
MflI	RGATCY	1 cut(s)	938
MhlI	GDGCHC	1 cut(s)	1006
MluCI	AATT	1 cut(s)	326
MlyI	GAGTC	3 cut(s)	412, 418, 503
MmeI	TCCRAC	1 cut(s)	916
MnlI	CCTC	7 cut(s)	141, 259, 598, 604, 687, 913, 948
MroXI	GAANNNNTTC	3 cut(s)	287, 326, 672
MseI	TTAA	4 cut(s)	255, 300, 518, 761
MspR9I	CCNGG	4 cut(s)	477, 713, 730, 914
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	4 cut(s)	477, 713, 730, 914
MwoI	GCNNNNNNNGC	2 cut(s)	596, 1050
NdeII	GATC	4 cut(s)	453, 833, 938, 965
NheI	GCTAGC	1 cut(s)	733
NlaIII	CATG	7 cut(s)	247, 460, 560, 581, 951, 1018, 1029
NlaIV	GGNNCC	2 cut(s)	334, 378
NmeAIII	GCCGAG	1 cut(s)	575
NmuCI	GTSAC	2 cut(s)	410, 637
NspI	RCATGY	1 cut(s)	560
PaqCI	CACCTGC	1 cut(s)	796
PciI	ACATGT	1 cut(s)	556
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	3 cut(s)	287, 326, 672
PfeI	GAWTC	4 cut(s)	164, 283, 424, 701
PfoI	TCCNGGA	1 cut(s)	711
PkrI	GCNGC	4 cut(s)	85, 350, 592, 960
Ple19I	CGATCG	1 cut(s)	968
PleI	GAGTC	3 cut(s)	412, 417, 502
PpsI	GAGTC	3 cut(s)	412, 417, 502
PscI	ACATGT	1 cut(s)	556
Psp6I	CCWGG	4 cut(s)	475, 711, 728, 912
PspGI	CCWGG	4 cut(s)	475, 711, 728, 912
PspN4I	GGNNCC	2 cut(s)	334, 378
PspPI	GGNCC	4 cut(s)	15, 28, 333, 715
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	938
PvuI	CGATCG	1 cut(s)	968
RsaI	GTAC	1 cut(s)	1030
RsaNI	GTAC	1 cut(s)	1029
SaqAI	TTAA	4 cut(s)	255, 300, 518, 761
SatI	GCNGC	4 cut(s)	84, 349, 591, 959
Sau3AI	GATC	4 cut(s)	453, 833, 938, 965
Sau96I	GGNCC	4 cut(s)	15, 28, 333, 715
SchI	GAGTC	3 cut(s)	412, 418, 503
ScrFI	CCNGG	4 cut(s)	477, 713, 730, 914
SduI	GDGCHC	1 cut(s)	1006
SfaNI	GCATC	2 cut(s)	827, 1024
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	2 cut(s)	333, 715
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	2 cut(s)	590, 958
SspMI	CTAG	3 cut(s)	600, 734, 1020
StyD4I	CCNGG	4 cut(s)	475, 711, 728, 912
TaaI	ACNGT	2 cut(s)	637, 643
TaqI	TCGA	3 cut(s)	889, 918, 968
TasI	AATT	1 cut(s)	326
TatI	WGTACW	1 cut(s)	1028
TauI	GCSGC	2 cut(s)	593, 961
TfiI	GAWTC	4 cut(s)	164, 283, 424, 701
Tru1I	TTAA	4 cut(s)	255, 300, 518, 761
Tru9I	TTAA	4 cut(s)	255, 300, 518, 761
TscAI	CASTG	1 cut(s)	1054
TseFI	GTSAC	2 cut(s)	410, 637
TseI	GCWGC	2 cut(s)	83, 348
Tsp45I	GTSAC	2 cut(s)	410, 637
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	1054
VpaK11BI	GGWCC	2 cut(s)	333, 715
XagI	CCTNNNNNAGG	1 cut(s)	598
XceI	RCATGY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	563
XmnI	GAANNNNTTC	3 cut(s)	287, 326, 672
XspI	CTAG	3 cut(s)	600, 734, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.