Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007871

Physical Location & Seq

Genomic Coordinates Forward (+)

68577753 .. 68578429

Gene Structure 677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0559800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGGCCTACAACTAAAAGCAGCAGCACCAGAATTGTCCATCCATGGAAGTCTCCATTACCTTACCTCTTTGGCAGCTTAGCCGTAATACTGCTACTCATTTTTGTTGCATTGATCATCCTCGTCTGCTCGTACCGCGAGGGCTCTTCTGGATCATCAAGTGATCGAGATGAAGAAAAGCCGAAAAAGCCCAACACGAACAGTACAGTGTGCGAAGACGAGCCTAAGATCGTTGTCATAATAATGGCCGGAGAAGACCAGCCCACGCACTTGGCTACACCGGTCACCTCTGTCTGCTCTTGCTCTTGCGGGAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0031515 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061953 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GCD14

Protein Analysis

106

Amino Acids

11.46

Weight (kDa)

7.63

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007871)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14600
fragaria_vesca	FvH4_6g51011 FvH4_6g51011 FvH4_6g51011
malus_domestica	MD09G1029500.v1.1 MD17G1031500.v1.1
prunus_persica	Prupe.3G287900_v2.0.a1
pyrus_communis	pycom111g02350 pycom17g02900
rosa_chinensis	RchiOBHm_Chr2g0172551
rosa_laevigata	RLG00000002839 RLG00000016014 RLG00000021671 RLG00000022115
rosa_multiflora	Rmu_sc0000912.1_g000006
rosa_roxburghii	Rroxscaffold_2G00079770
rosa_rugosa	Rorug02G0559800
rosa_samantha	Rh2AG635900 Rh2BG649300 Rh2CG616100 Rh2DG663700 Rh3AG202500 Rh3DG228000
rosa_wichuraiana	Rw2G052610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	138
AciI	CCGC	2 cut(s)	136, 309
AclWI	GGATC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	246
AfaI	GTAC	2 cut(s)	134, 205
AgeI	ACCGGT	1 cut(s)	280
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	160
AoxI	GGCC	2 cut(s)	5, 246
ApeKI	GCWGC	3 cut(s)	21, 24, 75
AsiGI	ACCGGT	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	146
BbsI	GAAGAC	2 cut(s)	222, 261
BbvI	GCAGC	3 cut(s)	33, 36, 87
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	68
BclI	TGATCA	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	57
BisI	GCNGC	3 cut(s)	22, 25, 76
BlpI	GCTNAGC	1 cut(s)	79
BlsI	GCNGC	3 cut(s)	23, 26, 77
BpiI	GAAGAC	2 cut(s)	222, 261
Bpu1102I	GCTNAGC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	40, 117
BseXI	GCAGC	3 cut(s)	33, 36, 87
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	7, 248
BshTI	ACCGGT	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	249, 281
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	7, 248
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	4 cut(s)	114, 152, 163, 228
Bsp1720I	GCTNAGC	1 cut(s)	79
Bsp19I	CCATGG	1 cut(s)	44
BspACI	CCGC	2 cut(s)	136, 309
BspANI	GGCC	2 cut(s)	7, 248
BspFNI	CGCG	1 cut(s)	138
BspPI	GGATC	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	4 cut(s)	114, 152, 163, 228
BssT1I	CCWWGG	1 cut(s)	44
Bst4CI	ACNGT	2 cut(s)	203, 208
Bst6I	CTCTTC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	79, 225
BstDSI	CCRYGG	1 cut(s)	44
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	2 cut(s)	40, 117
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	4 cut(s)	117, 155, 166, 231
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	4 cut(s)	114, 152, 163, 228
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 187
BstPI	GGTNACC	1 cut(s)	283
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	33, 36, 87
BstV2I	GAAGAC	2 cut(s)	222, 261
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	7, 248
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	40, 117
BtsIMutI	CAGTG	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	133, 204
CspAI	ACCGGT	1 cut(s)	280
CviAII	CATG	1 cut(s)	45
CviQI	GTAC	2 cut(s)	133, 204
DdeI	CTNAG	2 cut(s)	79, 225
DpnI	GATC	4 cut(s)	116, 154, 165, 230
DpnII	GATC	4 cut(s)	114, 152, 163, 228
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	44
Eco147I	AGGCCT	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	48
FaiI	YATR	2 cut(s)	46, 239
FatI	CATG	1 cut(s)	44
FauI	CCCGC	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	22, 25, 76
FokI	GGATG	2 cut(s)	27, 104
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	3 cut(s)	22, 25, 76
GluI	GCNGC	3 cut(s)	22, 25, 76
HaeIII	GGCC	2 cut(s)	7, 248
HapII	CCGG	2 cut(s)	249, 281
Hin1II	CATG	1 cut(s)	48
HpaII	CCGG	2 cut(s)	249, 281
HphI	GGTGA	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	2 cut(s)	150, 167
HpyCH4III	ACNGT	2 cut(s)	203, 208
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 187
HpyF3I	CTNAG	2 cut(s)	79, 225
Hsp92II	CATG	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	114, 152, 163, 228
LguI	GCTCTTC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	43, 135, 262, 272, 294
Lsp1109I	GCAGC	3 cut(s)	33, 36, 87
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	4 cut(s)	116, 154, 165, 230
MboI	GATC	4 cut(s)	114, 152, 163, 228
MboII	GAAGA	4 cut(s)	138, 185, 227, 266
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	1 cut(s)	33
MnlI	CCTC	4 cut(s)	77, 131, 133, 298
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	2 cut(s)	249, 281
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	135, 187
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	4 cut(s)	114, 152, 163, 228
NlaIII	CATG	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	23, 26, 77
PspEI	GGTNACC	1 cut(s)	283
RsaI	GTAC	2 cut(s)	134, 205
RsaNI	GTAC	2 cut(s)	133, 204
RseI	CAYNNNNRTG	1 cut(s)	242
SapI	GCTCTTC	1 cut(s)	151
SatI	GCNGC	3 cut(s)	22, 25, 76
Sau3AI	GATC	4 cut(s)	114, 152, 163, 228
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	4 cut(s)	64, 69, 80, 290
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	33
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	2 cut(s)	136, 309
StuI	AGGCCT	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	203, 208
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	33
TatI	WGTACW	1 cut(s)	203
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	3 cut(s)	21, 24, 75
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.