FvH4_6g51092

Cytochrome c oxidase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011750
Physical Location & Seq
Reverse (-)
37925541 .. 37925991
451 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51092.t1

Sequence Viewer

Length: 279 bp
ATGAGGAGCGAATCACCAAATGACGAAGTGCTTTCTAGTTTCTCTCCACCACTGGTCCTCTATTCCTTAACGATTTCAGGAATTATGGGAGCACCTAAGTTGGGACATGCTGCATATAATGGTCCAAGTATAATCAAGGAGATCTTCTATGGGATGACGATTGCGCTCGCGGCCGGTTACCTGTGGAAAAGGCATCACTGGAACGAGAAGAGGAGGAAAAAGGAGTTTTATGATCTGCTTGATGCAGGTGAAATCACTGTCGTCGTCGAAGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.37

Weight (kDa)

5.89

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AccII CGCG 1 cut(s) 170
AciI CCGC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 94
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 2 cut(s) 55, 122
AsuHPI GGTGA 2 cut(s) 6, 260
AvaII GGWCC 2 cut(s) 55, 122
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 97
BfaI CTAG 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 141
BisI GCNGC 2 cut(s) 111, 171
BlsI GCNGC 2 cut(s) 112, 172
Bme18I GGWCC 2 cut(s) 55, 122
BmgT120I GGNCC 2 cut(s) 55, 122
BmsI GCATC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 57, 203
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 101
BseNI ACTGG 2 cut(s) 57, 203
BseRI GAGGAG 2 cut(s) 19, 226
BseX3I CGGCCG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 141, 232
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 173
BspFNI CGCG 1 cut(s) 170
BspMI ACCTGC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 2 cut(s) 57, 203
BssAI RCCGGY 1 cut(s) 173
BssMI GATC 2 cut(s) 141, 232
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 176
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 1 cut(s) 170
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 2 cut(s) 144, 235
BstMBI GATC 2 cut(s) 141, 232
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 176
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BstZI CGGCCG 1 cut(s) 171
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 159
BtsIMutI CAGTG 3 cut(s) 50, 196, 255
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 2 cut(s) 55, 122
CviAII CATG 1 cut(s) 107
CviJI RGCY 1 cut(s) 173
CviKI_1 RGCY 1 cut(s) 173
DdeI CTNAG 1 cut(s) 96
DpnI GATC 2 cut(s) 143, 234
DpnII GATC 2 cut(s) 141, 232
EaeI YGGCCR 1 cut(s) 171
EagI CGGCCG 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
EclXI CGGCCG 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 55, 122
Eco52I CGGCCG 1 cut(s) 171
Eco91I GGTNACC 1 cut(s) 176
EcoO65I GGTNACC 1 cut(s) 176
FaeI CATG 1 cut(s) 110
FaiI YATR 7 cut(s) 86, 108, 115, 117, 131, 150, 231
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 117
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 111, 171
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 2 cut(s) 111, 171
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 165
GluI GCNGC 2 cut(s) 111, 171
HaeIII GGCC 1 cut(s) 173
HapII CCGG 1 cut(s) 174
HhaI GCGC 1 cut(s) 166
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 1 cut(s) 11
HpaII CCGG 1 cut(s) 174
HphI GGTGA 2 cut(s) 6, 260
Hpy188III TCNNGA 1 cut(s) 78
Hpy99I CGWCG 2 cut(s) 266, 269
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 2 cut(s) 113, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 1 cut(s) 164
Kzo9I GATC 2 cut(s) 141, 232
LmnI GCTCC 2 cut(s) 6, 89
LpnPI CCDG 6 cut(s) 38, 63, 184, 187, 194, 231
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 2 cut(s) 202, 232
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 176
MalI GATC 2 cut(s) 143, 234
MboI GATC 2 cut(s) 141, 232
MboII GAAGA 2 cut(s) 136, 220
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 1 cut(s) 81
MnlI CCTC 3 cut(s) 68, 204, 207
MseI TTAA 1 cut(s) 68
MspI CCGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 2 cut(s) 141, 232
NlaIII CATG 1 cut(s) 110
NspI RCATGY 1 cut(s) 110
PaqCI CACCTGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 2 cut(s) 112, 172
PspEI GGTNACC 1 cut(s) 176
PspPI GGNCC 2 cut(s) 55, 122
PsuI RGATCY 1 cut(s) 141
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 2 cut(s) 111, 171
Sau3AI GATC 2 cut(s) 141, 232
Sau96I GGNCC 2 cut(s) 55, 122
SduI GDGCHC 1 cut(s) 94
SetI ASST 3 cut(s) 97, 183, 250
SfaNI GCATC 2 cut(s) 202, 232
SinI GGWCC 2 cut(s) 55, 122
Sse9I AATT 1 cut(s) 81
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 267
TasI AATT 1 cut(s) 81
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 3 cut(s) 57, 203, 262
TseI GCWGC 1 cut(s) 110
TspRI CASTG 3 cut(s) 57, 203, 262
VpaK11BI GGWCC 2 cut(s) 55, 122
XceI RCATGY 1 cut(s) 110
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.