Rh2AG637800

Cytochrome c oxidase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011750
Physical Location & Seq
Reverse (-)
86211173 .. 86213711
2539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG637800.1

Sequence Viewer

Length: 183 bp
ATGGGTGCCCTTAAGATAGGACATGCTGCATATAAAGGTCCAAGTATACTCAAGGAGATCTTCTATGGGATAACTATTGGGCTCGCGGCCGGTTACCTGTGGAAAATGCATCACTGGAACGACCAGAGGAGGAGAAGGGAGTTTTATGATCTGCTTGATGCAGACAATTGGAAGACCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

7.04

Weight (kDa)

9.45

Isoelectric Point (pI)

68.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 46
AccII CGCG 1 cut(s) 86
AciI CCGC 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 87
AflII CTTAAG 1 cut(s) 11
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 38
AvaII GGWCC 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 13
BfrI CTTAAG 1 cut(s) 11
BglII AGATCT 1 cut(s) 57
BisI GCNGC 2 cut(s) 27, 87
BlsI GCNGC 2 cut(s) 28, 88
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 2 cut(s) 118, 148
BpiI GAAGAC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 2 cut(s) 142, 145
BseSI GKGCMC 1 cut(s) 10
BseX3I CGGCCG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 13
Bsh1236I CGCG 1 cut(s) 86
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 89
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 90
BsiSI CCGG 1 cut(s) 90
BsnI GGCC 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 10, 84
Bsp143I GATC 2 cut(s) 57, 148
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 89
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 7
BspT107I GGYRCC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 2 cut(s) 57, 148
BssNAI GTATAC 1 cut(s) 47
Bst1107I GTATAC 1 cut(s) 47
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 84
BstEII GGTNACC 1 cut(s) 92
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 2 cut(s) 60, 151
BstMBI GATC 2 cut(s) 57, 148
BstMCI CGRYCG 1 cut(s) 90
BstNSI RCATGY 1 cut(s) 26
BstPI GGTNACC 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 10
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BstZ17I GTATAC 1 cut(s) 47
BstZI CGGCCG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 38
CviAII CATG 1 cut(s) 23
CviJI RGCY 2 cut(s) 82, 89
CviKI_1 RGCY 2 cut(s) 82, 89
DpnI GATC 2 cut(s) 59, 150
DpnII GATC 2 cut(s) 57, 148
EaeI YGGCCR 1 cut(s) 87
EagI CGGCCG 1 cut(s) 87
EclXI CGGCCG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 38
Eco52I CGGCCG 1 cut(s) 87
Eco91I GGTNACC 1 cut(s) 92
EcoO65I GGTNACC 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 1 cut(s) 26
FaiI YATR 7 cut(s) 24, 31, 33, 47, 66, 147, 181
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 1 cut(s) 22
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 27, 87
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 27, 87
GluI GCNGC 2 cut(s) 27, 87
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 90
Hin1II CATG 1 cut(s) 26
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 129
HpyCH4V TGCA 3 cut(s) 29, 109, 161
Hsp92II CATG 1 cut(s) 26
Kzo9I GATC 2 cut(s) 57, 148
LpnPI CCDG 4 cut(s) 100, 103, 110, 137
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 2 cut(s) 118, 148
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 59, 150
MboI GATC 2 cut(s) 57, 148
MboII GAAGA 1 cut(s) 52
MfeI CAATTG 1 cut(s) 166
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 2 cut(s) 10, 84
MluCI AATT 1 cut(s) 166
MnlI CCTC 2 cut(s) 120, 123
Mph1103I ATGCAT 1 cut(s) 111
MseI TTAA 1 cut(s) 12
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 1 cut(s) 90
MunI CAATTG 1 cut(s) 166
MvnI CGCG 1 cut(s) 86
NdeII GATC 2 cut(s) 57, 148
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 111
NspI RCATGY 1 cut(s) 26
PkrI GCNGC 2 cut(s) 28, 88
PspEI GGTNACC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 57
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 2 cut(s) 27, 87
Sau3AI GATC 2 cut(s) 57, 148
Sau96I GGNCC 1 cut(s) 38
SduI GDGCHC 2 cut(s) 10, 84
SetI ASST 2 cut(s) 40, 99
SfaNI GCATC 2 cut(s) 118, 148
SinI GGWCC 1 cut(s) 38
SmlI CTYRAG 2 cut(s) 11, 50
SmoI CTYRAG 2 cut(s) 11, 50
Sse9I AATT 1 cut(s) 166
SsiI CCGC 1 cut(s) 86
TasI AATT 1 cut(s) 166
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 119
TseI GCWGC 1 cut(s) 26
TspRI CASTG 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 38
XceI RCATGY 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 46
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.