Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011750

Physical Location & Seq

Genomic Coordinates Reverse (-)

89006470 .. 89007198

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG664600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCGTGTCCTCTTTTTCGAAGTCATTGTCCCACTAAACGCCTTTTTCCAAGCTCTTCCTCCTAAAACAGTCCTAAATTTGTTATCTTACACCCTTTGTCCTAGCCCTCTACTACTAAACACTTCCACACCAAATTCTAATAGTGATATCAAAGGCACAAATTCCAACAATGATCTTGTTGTTGTGGATTATTCTGCAGGAATAATGGGTGCCCCTAAGATAGGACATGCTGCATATAAAGGTCCAAGTATACTCAAGGAGATCTTCTATGGGATAACTATTGGGCTCGCAGCCGGTTACCTGTGGAAAATGCATCACTGGAACGAGCAGAGGAGGAGAAGGGAGTTTTATGATCTGCTTGATGCAGGTAAAATTACTACCGTCGTCGACGAAGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.86

Weight (kDa)

6.28

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40382 AT5G40382
fragaria_vesca	FvH4_6g51092
malus_domestica	MD00G1179300.v1.1 MD03G1294600.v1.1 MD04G1041800.v1.1 MD04G1152800.v1.1
prunus_persica	Prupe.1G195500_v2.0.a1 Prupe.3G288700_v2.0.a1 Prupe.8G266700_v2.0.a1
pyrus_communis	pycom11g27390
rosa_chinensis	RchiOBHm_Chr2g0172621
rosa_samantha	Rh2AG637200 Rh2AG637800 Rh2BG650600 Rh2BG651400 Rh2CG617100 Rh2DG664600
rosa_wichuraiana	Rw2G052680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	209
AccI	GTMKAC	2 cut(s)	250, 387
AcsI	RAATTY	3 cut(s)	76, 133, 160
AfiI	CCNNNNNNNGG	1 cut(s)	221
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
ApeKI	GCWGC	2 cut(s)	230, 290
ApoI	RAATTY	3 cut(s)	76, 133, 160
ArsI	GACNNNNNNTTYG	2 cut(s)	12, 44
AspS9I	GGNCC	1 cut(s)	242
AsuII	TTCGAA	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	217, 302
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	356
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	2 cut(s)	231, 291
BlsI	GCNGC	2 cut(s)	232, 292
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	2 cut(s)	322, 352
Bpu14I	TTCGAA	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	323
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	2 cut(s)	346, 349
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	217, 302
BshNI	GGYRCC	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	214, 288
Bsp143I	GATC	3 cut(s)	172, 261, 352
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	60
BspT104I	TTCGAA	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	293
BssMI	GATC	3 cut(s)	172, 261, 352
BssNAI	GTATAC	1 cut(s)	251
Bst1107I	GTATAC	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	70, 382
Bst6I	CTCTTC	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	216
BstEII	GGTNACC	1 cut(s)	296
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstKTI	GATC	3 cut(s)	175, 264, 355
BstMBI	GATC	3 cut(s)	172, 261, 352
BstNSI	RCATGY	1 cut(s)	230
BstPI	GGTNACC	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	2 cut(s)	217, 302
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BstZ17I	GTATAC	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	242
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	4 cut(s)	53, 105, 286, 293
CviKI_1	RGCY	4 cut(s)	53, 105, 286, 293
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	3 cut(s)	174, 263, 354
DpnII	GATC	3 cut(s)	172, 261, 352
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoO65I	GGTNACC	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	288
FaeI	CATG	1 cut(s)	230
FaiI	YATR	6 cut(s)	228, 235, 237, 251, 270, 351
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	1 cut(s)	226
FblI	GTMKAC	2 cut(s)	250, 387
Fnu4HI	GCNGC	2 cut(s)	231, 291
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	231, 291
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	2 cut(s)	231, 291
HapII	CCGG	1 cut(s)	294
Hin1II	CATG	1 cut(s)	230
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	294
Hpy166II	GTNNAC	2 cut(s)	251, 388
Hpy8I	GTNNAC	2 cut(s)	251, 388
Hpy99I	CGWCG	3 cut(s)	386, 389, 392
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	2 cut(s)	70, 382
HpyCH4V	TGCA	4 cut(s)	197, 233, 313, 365
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	230
Kzo9I	GATC	3 cut(s)	172, 261, 352
LguI	GCTCTTC	1 cut(s)	60
LpnPI	CCDG	5 cut(s)	183, 304, 307, 314, 351
Lsp1109I	GCAGC	2 cut(s)	217, 302
LweI	GCATC	2 cut(s)	322, 352
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	3 cut(s)	174, 263, 354
MboI	GATC	3 cut(s)	172, 261, 352
MboII	GAAGA	2 cut(s)	47, 256
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	214, 288
MluCI	AATT	4 cut(s)	76, 133, 160, 372
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	20, 69, 117, 324, 327
Mph1103I	ATGCAT	1 cut(s)	315
MspI	CCGG	1 cut(s)	294
NdeII	GATC	3 cut(s)	172, 261, 352
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	315
NspI	RCATGY	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	232, 292
PspEI	GGTNACC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	261
SalI	GTCGAC	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	60
SatI	GCNGC	2 cut(s)	231, 291
Sau3AI	GATC	3 cut(s)	172, 261, 352
Sau96I	GGNCC	1 cut(s)	242
SduI	GDGCHC	2 cut(s)	214, 288
SetI	ASST	4 cut(s)	55, 244, 303, 370
SfaNI	GCATC	2 cut(s)	322, 352
SfcI	CTRYAG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	18
SgrDI	CGTCGACG	1 cut(s)	386
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	76, 133, 160, 372
SspMI	CTAG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	70, 382
TaqI	TCGA	2 cut(s)	18, 387
TasI	AATT	4 cut(s)	76, 133, 160, 372
TscAI	CASTG	1 cut(s)	323
TseI	GCWGC	2 cut(s)	230, 290
TspRI	CASTG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	242
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	3 cut(s)	76, 133, 160
XceI	RCATGY	1 cut(s)	230
XmiI	GTMKAC	2 cut(s)	250, 387
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.