Rh2CG617100

Cytochrome c oxidase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011750
Physical Location & Seq
Reverse (-)
79285395 .. 79285592
198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG617100.1

Sequence Viewer

Length: 198 bp
ATGGGTGCCCCTAAGATAGGACATGCTGCATATAAAGGTCCAAGTATACTCAAGGAGATCTTCTATGGGATAACTATTGGGCTCGCAGCCGGTTACCTGTGGAAAATGCATCACTGGAACGAGCAGAGGAGGAGAAGGGAGTTTTATGATCTGCTTGATGCAGGTAAAATTACTACCGTCGTCGACGAAGACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.48

Weight (kDa)

6.83

Isoelectric Point (pI)

72.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 2 cut(s) 46, 183
AfiI CCNNNNNNNGG 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 26, 86
AspS9I GGNCC 1 cut(s) 38
AvaII GGWCC 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 13, 98
BfuAI ACCTGC 1 cut(s) 152
BglII AGATCT 1 cut(s) 57
BisI GCNGC 2 cut(s) 27, 87
BlsI GCNGC 2 cut(s) 28, 88
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 2 cut(s) 118, 148
BpuEI CTTGAG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 2 cut(s) 142, 145
BseSI GKGCMC 1 cut(s) 10
BseXI GCAGC 2 cut(s) 13, 98
BshNI GGYRCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 10, 84
Bsp143I GATC 2 cut(s) 57, 148
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 2 cut(s) 57, 148
BssNAI GTATAC 1 cut(s) 47
Bst1107I GTATAC 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 12
BstEII GGTNACC 1 cut(s) 92
BstENI CCTNNNNNAGG 1 cut(s) 15
BstKTI GATC 2 cut(s) 60, 151
BstMBI GATC 2 cut(s) 57, 148
BstNSI RCATGY 1 cut(s) 26
BstPI GGTNACC 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 13, 98
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BstZ17I GTATAC 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 112
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 38
CviAII CATG 1 cut(s) 23
CviJI RGCY 2 cut(s) 82, 89
CviKI_1 RGCY 2 cut(s) 82, 89
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 59, 150
DpnII GATC 2 cut(s) 57, 148
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 38
Eco91I GGTNACC 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 15
EcoO65I GGTNACC 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 84
FaeI CATG 1 cut(s) 26
FaiI YATR 6 cut(s) 24, 31, 33, 47, 66, 147
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FatI CATG 1 cut(s) 22
FblI GTMKAC 2 cut(s) 46, 183
Fnu4HI GCNGC 2 cut(s) 27, 87
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 2 cut(s) 27, 87
GluI GCNGC 2 cut(s) 27, 87
HapII CCGG 1 cut(s) 90
Hin1II CATG 1 cut(s) 26
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 2 cut(s) 47, 184
Hpy8I GTNNAC 2 cut(s) 47, 184
Hpy99I CGWCG 3 cut(s) 182, 185, 188
HpyAV CCTTC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 3 cut(s) 29, 109, 161
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 1 cut(s) 26
Kzo9I GATC 2 cut(s) 57, 148
LpnPI CCDG 4 cut(s) 100, 103, 110, 147
Lsp1109I GCAGC 2 cut(s) 13, 98
LweI GCATC 2 cut(s) 118, 148
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 59, 150
MboI GATC 2 cut(s) 57, 148
MboII GAAGA 1 cut(s) 52
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 2 cut(s) 10, 84
MluCI AATT 1 cut(s) 168
MnlI CCTC 2 cut(s) 120, 123
Mph1103I ATGCAT 1 cut(s) 111
MspI CCGG 1 cut(s) 90
NdeII GATC 2 cut(s) 57, 148
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 111
NspI RCATGY 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PkrI GCNGC 2 cut(s) 28, 88
PspEI GGTNACC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 57
SalI GTCGAC 1 cut(s) 182
SatI GCNGC 2 cut(s) 27, 87
Sau3AI GATC 2 cut(s) 57, 148
Sau96I GGNCC 1 cut(s) 38
SduI GDGCHC 2 cut(s) 10, 84
SetI ASST 3 cut(s) 40, 99, 166
SfaNI GCATC 2 cut(s) 118, 148
SgrDI CGTCGACG 1 cut(s) 182
SinI GGWCC 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 1 cut(s) 168
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 183
TasI AATT 1 cut(s) 168
TscAI CASTG 1 cut(s) 119
TseI GCWGC 2 cut(s) 26, 86
TspRI CASTG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 38
XagI CCTNNNNNAGG 1 cut(s) 15
XceI RCATGY 1 cut(s) 26
XmiI GTMKAC 2 cut(s) 46, 183
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.