Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011750

Physical Location & Seq

Genomic Coordinates Reverse (-)

4955430 .. 4956073

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1041800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGCGGCGGGTAGGGTGCCGCATCCGCCACTGAAAGGGCCGAACCTGGTGAAGGAGATAGCAATGGGAATTGCGGTGGCGATGGTGGCGGCGATGCCGTGGAAAATGTACCAATGGGATTTGCAGAAGAGGACCAGGACTATGTATGAGTTGCTCGACAAAGGTGAAGCAACTGTTGTTGCTCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

64

Amino Acids

7.04

Weight (kDa)

9.22

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40382 AT5G40382
fragaria_vesca	FvH4_6g51092
malus_domestica	MD00G1179300.v1.1 MD03G1294600.v1.1 MD04G1041800.v1.1 MD04G1152800.v1.1
prunus_persica	Prupe.1G195500_v2.0.a1 Prupe.3G288700_v2.0.a1 Prupe.8G266700_v2.0.a1
pyrus_communis	pycom11g27390
rosa_chinensis	RchiOBHm_Chr2g0172621
rosa_samantha	Rh2AG637200 Rh2AG637800 Rh2BG650600 Rh2BG651400 Rh2CG617100 Rh2DG664600
rosa_wichuraiana	Rw2G052680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AciI	CCGC	6 cut(s)	5, 8, 20, 26, 74, 89
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	35, 52
AjnI	CCWGG	2 cut(s)	45, 134
AoxI	GGCC	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	38, 132
AsuHPI	GGTGA	2 cut(s)	61, 176
AvaII	GGWCC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	16
BccI	CCATC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	47, 136
BisI	GCNGC	3 cut(s)	6, 20, 90
BlsI	GCNGC	3 cut(s)	7, 21, 91
Bme1390I	CCNGG	2 cut(s)	47, 136
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	38, 132
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	47, 136
BmsI	GCATC	2 cut(s)	31, 84
BpuEI	CTTGAG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 52
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	47, 136
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	35, 52
BseMI	GCAATG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	40
BshNI	GGYRCC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	35, 52
BsnI	GGCC	1 cut(s)	40
BspACI	CCGC	6 cut(s)	5, 8, 20, 26, 74, 89
BspANI	GGCC	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	98
Bst2UI	CCWGG	2 cut(s)	47, 136
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	98
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 86
BstNI	CCWGG	2 cut(s)	47, 136
BstSCI	CCNGG	2 cut(s)	45, 134
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	98
BtgZI	GCGATG	2 cut(s)	95, 107
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	38, 132
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	109
CviJI	RGCY	1 cut(s)	40
CviKI_1	RGCY	1 cut(s)	40
CviQI	GTAC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	45, 134
FaiI	YATR	2 cut(s)	143, 147
Fnu4HI	GCNGC	3 cut(s)	6, 20, 90
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	6, 20, 90
GluI	GCNGC	3 cut(s)	6, 20, 90
HaeIII	GGCC	1 cut(s)	40
HphI	GGTGA	2 cut(s)	61, 176
Hpy188III	TCNNGA	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 86
LpnPI	CCDG	4 cut(s)	32, 59, 121, 148
LweI	GCATC	2 cut(s)	31, 84
MabI	ACCWGGT	1 cut(s)	45
MboII	GAAGA	1 cut(s)	139
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	47, 136
MvaI	CCWGG	2 cut(s)	47, 136
MwoI	GCNNNNNNNGC	2 cut(s)	25, 86
NlaIV	GGNNCC	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	7, 21, 91
Psp6I	CCWGG	2 cut(s)	45, 134
PspGI	CCWGG	2 cut(s)	45, 134
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	2 cut(s)	38, 132
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SatI	GCNGC	3 cut(s)	6, 20, 90
Sau96I	GGNCC	2 cut(s)	38, 132
ScrFI	CCNGG	2 cut(s)	47, 136
SetI	ASST	2 cut(s)	48, 166
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	2 cut(s)	31, 84
SgeI	CNNG	7 cut(s)	21, 58, 59, 111, 147, 148, 167
SinI	GGWCC	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	6 cut(s)	5, 8, 20, 26, 74, 89
StyD4I	CCNGG	2 cut(s)	45, 134
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	69
TauI	GCSGC	3 cut(s)	8, 22, 92
TscAI	CASTG	1 cut(s)	36
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	132
XagI	CCTNNNNNAGG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.