Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011750

Physical Location & Seq

Genomic Coordinates Forward (+)

29657297 .. 29661508

Gene Structure 4212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g27390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAATACCTCACAGAGGTAGTCAGAGACATGAAATACCTCACAGAGGTAGTGGAGTATGTTGACAAACACTCCTTACCAAATGGAGTTCCTCCTCCTTCTGCTCATCCTCGAGCACCGTCGAAGGAGGGAGCCAATGGCAAGAACGGTAACAGCAAGTCGGAGGGCAACGGTGGCGGAGCAAAACCAAACGGTGGCCACGTTAACCATTCATACTATGCTACTATTATATATTCAACACTTGCCGTTTGCTCCGCCACCGTTTGGTTTTTCTCCGCCACCGTTGCCCTCCGACTTGCTGTTACCGTTCTTGCCATTGGCTCCCTCCTTCGACGGTGTTGGAGGACAGGCAAGAGGAGGAGGAACTTCCTTTGGGATAAAAAGGTAAACCCAAAAAGAAACACTGCAAAACTTTTAAAGGGCCAAAATCGAAGCCCAATAAAACGATCACCCGCTCCCGCTAATTCCAATTTAAGCCTACAAGGGACAAGAAGCCCACAATCTCGAAAGGGCCGACATTTTCTCCTGCAGGGAAGGGGAGGCTCACACTCACCGGACGGCAATCAGTTGAAAAGGATTGACCTTTACCCGAAGCCCCAATTTCGGATTCGCAATCTCTCTCTCTCATTTTCTCCATCTCGTCGCAGCCTCTTCGTTCTCAGATCAAGTGAAATGGCTGGTCACAAGATTGCTCATGCCACATTGAAAGGCCCAAGCGTTGTCAAGGAGATATTGTACGGATCGGTGCTTGCTTTGGCTTGTGGAAGTCTTTGGAAAATGCATCACTGGAATGAGCAGAGGAAGGTGAGGGCATTCTATGACTTGCTCGACAAGGGTGAGATCAGTGTTGTTGCTGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

31.88

Weight (kDa)

10.5

Isoelectric Point (pI)

62.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40382 AT5G40382
fragaria_vesca	FvH4_6g51092
malus_domestica	MD00G1179300.v1.1 MD03G1294600.v1.1 MD04G1041800.v1.1 MD04G1152800.v1.1
prunus_persica	Prupe.1G195500_v2.0.a1 Prupe.3G288700_v2.0.a1 Prupe.8G266700_v2.0.a1
pyrus_communis	pycom11g27390
rosa_chinensis	RchiOBHm_Chr2g0172621
rosa_samantha	Rh2AG637200 Rh2AG637800 Rh2BG650600 Rh2BG651400 Rh2CG617100 Rh2DG664600
rosa_wichuraiana	Rw2G052680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	194, 264
AccBSI	CCGCTC	1 cut(s)	455
AciI	CCGC	5 cut(s)	177, 255, 276, 453, 459
AclWI	GGATC	1 cut(s)	748
AcoI	YGGCCR	1 cut(s)	196
AfaI	GTAC	1 cut(s)	737
AfiI	CCNNNNNNNGG	5 cut(s)	16, 46, 194, 264, 603
AgsI	TTSAA	3 cut(s)	237, 571, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	748
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	4 cut(s)	196, 421, 511, 709
ApeKI	GCWGC	1 cut(s)	645
AspS9I	GGNCC	3 cut(s)	421, 511, 710
AsuHPI	GGTGA	4 cut(s)	441, 543, 817, 848
AvaI	CYCGRG	1 cut(s)	111
BalI	TGGCCA	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	657
BccI	CCATC	1 cut(s)	643
BceAI	ACGGC	2 cut(s)	230, 574
BcgI	CGANNNNNNTGC	2 cut(s)	634, 668
BcoDI	GTCTC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	527
BisI	GCNGC	1 cut(s)	646
BlsI	GCNGC	1 cut(s)	647
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	3 cut(s)	421, 511, 710
BmiI	GGNNCC	2 cut(s)	133, 322
BmsI	GCATC	1 cut(s)	790
BsaWI	WCCGGW	1 cut(s)	553
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 507, 537, 719, 749
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 46, 194, 264, 603
Bse1I	ACTGG	1 cut(s)	791
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	5 cut(s)	16, 46, 194, 264, 603
BseMII	CTCAG	1 cut(s)	673
BseNI	ACTGG	1 cut(s)	791
BseRI	GAGGAG	3 cut(s)	84, 370, 373
BseXI	GCAGC	1 cut(s)	657
BshFI	GGCC	4 cut(s)	198, 423, 513, 711
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	5 cut(s)	16, 46, 194, 264, 603
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	499
BsmI	GAATGC	1 cut(s)	812
BsnI	GGCC	4 cut(s)	198, 423, 513, 711
BsoBI	CYCGRG	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	4 cut(s)	446, 662, 740, 840
BspACI	CCGC	5 cut(s)	177, 255, 276, 453, 459
BspANI	GGCC	4 cut(s)	198, 423, 513, 711
BspCNI	CTCAG	1 cut(s)	672
BspLI	GGNNCC	2 cut(s)	133, 322
BspMAI	CTGCAG	1 cut(s)	531
BspPI	GGATC	1 cut(s)	748
BsrBI	CCGCTC	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	791
BssMI	GATC	4 cut(s)	446, 662, 740, 840
Bst4CI	ACNGT	8 cut(s)	120, 149, 173, 194, 262, 283, 307, 336
Bst6I	CTCTTC	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	1 cut(s)	659
BstENI	CCTNNNNNAGG	2 cut(s)	14, 44
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	4 cut(s)	449, 665, 743, 843
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	4 cut(s)	446, 662, 740, 840
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 284
BstSFI	CTRYAG	1 cut(s)	527
BstV1I	GCAGC	1 cut(s)	657
BsuRI	GGCC	4 cut(s)	198, 423, 513, 711
BtsCI	GGATG	1 cut(s)	106
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	3 cut(s)	402, 784, 850
Cac8I	GCNNGC	1 cut(s)	750
Cfr13I	GGNCC	3 cut(s)	421, 511, 710
Csp6I	GTAC	1 cut(s)	736
CviAII	CATG	2 cut(s)	31, 695
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	1 cut(s)	659
DpnI	GATC	4 cut(s)	448, 664, 742, 842
DpnII	GATC	4 cut(s)	446, 662, 740, 840
DraI	TTTAAA	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
EciI	GGCGGA	3 cut(s)	192, 244, 265
Eco88I	CYCGRG	1 cut(s)	111
EcoNI	CCTNNNNNAGG	2 cut(s)	14, 44
EcoT22I	ATGCAT	1 cut(s)	783
FaeI	CATG	2 cut(s)	34, 698
FaiI	YATR	8 cut(s)	32, 60, 214, 219, 230, 232, 696, 819
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	2 cut(s)	30, 694
FauI	CCCGC	2 cut(s)	460, 466
Fnu4HI	GCNGC	1 cut(s)	646
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	646
GluI	GCNGC	1 cut(s)	646
HaeIII	GGCC	4 cut(s)	198, 423, 513, 711
HapII	CCGG	1 cut(s)	554
Hin1II	CATG	2 cut(s)	34, 698
HincII	GTYRAC	2 cut(s)	64, 205
HindII	GTYRAC	2 cut(s)	64, 205
HinfI	GANTC	1 cut(s)	607
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	4 cut(s)	441, 543, 817, 848
Hpy166II	GTNNAC	3 cut(s)	64, 205, 388
Hpy188I	TCNGA	5 cut(s)	26, 163, 293, 606, 662
Hpy188III	TCNNGA	1 cut(s)	504
Hpy8I	GTNNAC	3 cut(s)	64, 205, 388
Hpy99I	CGWCG	3 cut(s)	124, 336, 645
HpyAV	CCTTC	5 cut(s)	108, 118, 338, 528, 796
HpyCH4III	ACNGT	8 cut(s)	120, 149, 173, 194, 262, 283, 307, 336
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	407, 529, 781
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 284
HpyF3I	CTNAG	1 cut(s)	659
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	34, 698
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	446, 662, 740, 840
LmnI	GCTCC	5 cut(s)	131, 179, 257, 326, 460
LpnPI	CCDG	6 cut(s)	333, 515, 539, 567, 663, 772
Lsp1109I	GCAGC	1 cut(s)	657
LweI	GCATC	1 cut(s)	790
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	3 cut(s)	149, 301, 680
MalI	GATC	4 cut(s)	448, 664, 742, 842
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	4 cut(s)	446, 662, 740, 840
MboII	GAAGA	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	3 cut(s)	463, 469, 599
MluNI	TGGCCA	1 cut(s)	198
MmeI	TCCRAC	3 cut(s)	141, 316, 320
Mox20I	TGGCCA	1 cut(s)	198
Mph1103I	ATGCAT	1 cut(s)	783
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	3 cut(s)	204, 416, 473
MslI	CAYNNNNRTG	1 cut(s)	789
Msp20I	TGGCCA	1 cut(s)	198
MspI	CCGG	1 cut(s)	554
Mva1269I	GAATGC	1 cut(s)	812
MwoI	GCNNNNNNNGC	2 cut(s)	174, 284
NdeII	GATC	4 cut(s)	446, 662, 740, 840
NlaIII	CATG	2 cut(s)	34, 698
NlaIV	GGNNCC	2 cut(s)	133, 322
NmuCI	GTSAC	1 cut(s)	680
NsiI	ATGCAT	1 cut(s)	783
PaeR7I	CTCGAG	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 511
PctI	GAATGC	1 cut(s)	812
PfeI	GAWTC	1 cut(s)	607
PflMI	CCANNNNNTGG	2 cut(s)	194, 264
PkrI	GCNGC	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	133, 322
PspPI	GGNCC	3 cut(s)	421, 511, 710
PspXI	VCTCGAGB	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	531
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
RseI	CAYNNNNRTG	1 cut(s)	789
SaqAI	TTAA	3 cut(s)	204, 416, 473
SatI	GCNGC	1 cut(s)	646
Sau3AI	GATC	4 cut(s)	446, 662, 740, 840
Sau96I	GGNCC	3 cut(s)	421, 511, 710
SbfI	CCTGCAGG	1 cut(s)	531
SdaI	CCTGCAGG	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	8 cut(s)	12, 21, 42, 51, 204, 387, 585, 807
SfaNI	GCATC	1 cut(s)	790
SfcI	CTRYAG	1 cut(s)	527
Sfr274I	CTCGAG	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	789
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse8387I	CCTGCAGG	1 cut(s)	531
Sse9I	AATT	3 cut(s)	463, 469, 599
SsiI	CCGC	5 cut(s)	177, 255, 276, 453, 459
TaaI	ACNGT	8 cut(s)	120, 149, 173, 194, 262, 283, 307, 336
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	6 cut(s)	112, 122, 331, 430, 505, 828
TasI	AATT	3 cut(s)	463, 469, 599
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	3 cut(s)	204, 416, 473
Tru9I	TTAA	3 cut(s)	204, 416, 473
TscAI	CASTG	3 cut(s)	409, 791, 850
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	1 cut(s)	645
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	3 cut(s)	17, 47, 201
TspGWI	ACGGA	1 cut(s)	753
TspRI	CASTG	3 cut(s)	409, 791, 850
Van91I	CCANNNNNTGG	2 cut(s)	194, 264
XagI	CCTNNNNNAGG	2 cut(s)	14, 44
XhoI	CTCGAG	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.