MD03G1294600.v1.1

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011750
Physical Location & Seq
Forward (+)
37071558 .. 37073242
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1294600.v1.1.491

Sequence Viewer

Length: 192 bp
ATGGCGGGTCACAAGATTGCTCATGCCACATTGAAAGGTCCAAGTGTTGTCAAGGAGATATTGTATGGATCGGTGCTTGCCTTGGCTTGCGGGAGTCTGTGGAAAATGCATCACTGGAATGAGCAGAGGAAAGTGAGGGCGTTCTACGACTTGCTCGAGAAGGGTGAAATCAGTGTTGTCGTTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.08

Weight (kDa)

7.94

Isoelectric Point (pI)

60.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 90
AclWI GGATC 1 cut(s) 76
AgsI TTSAA 2 cut(s) 34, 185
AlwI GGATC 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 38
BmsI GCATC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bse1I ACTGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 2 cut(s) 5, 90
BspPI GGATC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 78, 88
BstKTI GATC 1 cut(s) 71
BstMBI GATC 1 cut(s) 68
BtsIMutI CAGTG 2 cut(s) 112, 178
Cac8I GCNNGC 2 cut(s) 78, 88
Cfr13I GGNCC 1 cut(s) 38
CviAII CATG 1 cut(s) 23
CviJI RGCY 1 cut(s) 86
CviKI_1 RGCY 1 cut(s) 86
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 26
FaiI YATR 2 cut(s) 24, 66
FatI CATG 1 cut(s) 22
FauI CCCGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 26
HinfI GANTC 1 cut(s) 94
HphI GGTGA 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 109
Hsp92II CATG 1 cut(s) 26
Kzo9I GATC 1 cut(s) 68
LpnPI CCDG 1 cut(s) 100
LweI GCATC 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 2 cut(s) 120, 129
Mph1103I ATGCAT 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 117
NdeII GATC 1 cut(s) 68
NlaIII CATG 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 111
PaeR7I CTCGAG 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 117
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 103
SetI ASST 1 cut(s) 40
SfaNI GCATC 1 cut(s) 118
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 38
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SsiI CCGC 2 cut(s) 5, 90
StyI CCWWGG 1 cut(s) 81
TaqI TCGA 1 cut(s) 156
TscAI CASTG 2 cut(s) 119, 178
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspRI CASTG 2 cut(s) 119, 178
VpaK11BI GGWCC 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 155
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.