Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009067

Physical Location & Seq

Genomic Coordinates Forward (+)

1673703 .. 1677715

Gene Structure 4013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01260.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGGATGTCCAGGAGCAGCAGAGTCCCTCACTTGGTCAAGATGGTGAAAACGAAATAGTCATTGAAAATGCTGCATCTGTTCATGCGGAACGTCCTCAGGATGCTAACGGCCCCCCAAAAGTTAATACTAAGGCAGAAATTCTTCATGACAAAGTTAAGAAGCAAATCATTAAGGAAGGCCATGGTCCAATACCATCCAAATATTCGACATGCTTCTTGCACTACAGGGCATGGACTGAGAGCACACAGCATAAATTTGAAGACACATGGGATGAACAAAGACCACTTGAAATGATTTTAGGAAAAGAGAAAAAAGAAATGACTGGCTTGGCTATTGGTGTATCCAGCATGAAGGCTGGAGAACGTGCACTCTTACATGTAGGCTGGGAATTAGGATACGGAAAGGAAGGAAACTTTTCTTTCCCAAACGTTCCACCATCAGCAGATATATTGTATGAAGTTGAGCTTATTGGATTTGATGAGACCAAAGAAGGGAAAGCTCGTGGTGATATGACTGTGGAGGAGAGGATTGGAGCAGCAGATAGAAGAAAGATGGACGGAAATGCTTTATATAAGGAGGAAAAACTGGAGGAGGCTATGCAACAGTATGAAATGGCAATAGCATATATGGGCGATGACTTCATGTTCCAATTGTTTGGGAAGTACAGGGACATGGCTTTGGCTGTTAAAAATCCATGCCACCTTAACATGGCAGCATCCCTGATAAAGCTCAAGCGATATGAAGAAGCCATTGGACAATGCACTGTTGTACTGGCAGAAGATGAAAACAATGTCAAAGCCCTATTTAGGCGAGCAAAAGCCAGAGCAGAGCTTGGGCAGACAGATGCTGCACGTGAAGATTTTCTAAAGGCACGCAAATTTGCTCCTCAAGACAAAGCTATTGCAAGAGAGTTACGCCTGCTTGCTGAACATGACAAGGCTGTTTATCAGAAACAGAAGGAGATCTACAAGGGAATTTTCGGACCAACTCCGGAACCTAAACTGAAGCAAACTAATTGGTTGATCAGTATTTGGCAATGGCTGTTGTCATTATTCTACAGTCTCTTCAGGCGTGAGAAGCGAAAAGCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

366

Amino Acids

41.73

Weight (kDa)

6.16

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	60 - 152	2.5e-16	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260
prunus_persica	Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1
pyrus_communis	pycom02g25960
rosa_chinensis	RchiOBHm_Chr1g0317011
rosa_laevigata	RLG00000030633
rosa_multiflora	Rmu_co8449809.1_g000001 Rmu_sc0006455.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330740
rosa_rugosa	Rorug01G0013800
rosa_samantha	Rh1AG024900 Rh1BG021700 Rh1CG023300 Rh1DG022100 Rh5BG177800
rosa_wichuraiana	Rw1G001720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	994
AciI	CCGC	1 cut(s)	89
AclI	AACGTT	1 cut(s)	432
AcsI	RAATTY	4 cut(s)	141, 257, 881, 978
AcuI	CTGAAG	2 cut(s)	1028, 1054
AcvI	CACGTG	1 cut(s)	857
AfaI	GTAC	2 cut(s)	668, 774
AfiI	CCNNNNNNNGG	4 cut(s)	35, 495, 712, 810
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	68, 263, 293
AjnI	CCWGG	1 cut(s)	12
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AluBI	AGCT	6 cut(s)	469, 503, 733, 835, 902, 1091
AluI	AGCT	6 cut(s)	469, 503, 733, 835, 902, 1091
Alw21I	GWGCWC	2 cut(s)	248, 373
Alw26I	GTCTC	2 cut(s)	479, 1070
Alw44I	GTGCAC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	851
Aor13HI	TCCGGA	1 cut(s)	994
AoxI	GGCC	2 cut(s)	112, 181
ApaLI	GTGCAC	1 cut(s)	369
ApeKI	GCWGC	5 cut(s)	19, 74, 539, 716, 851
ApoI	RAATTY	4 cut(s)	141, 257, 881, 978
Asp700I	GAANNNNTTC	3 cut(s)	144, 418, 864
AspS9I	GGNCC	3 cut(s)	113, 188, 986
AsuHPI	GGTGA	2 cut(s)	59, 521
AvaII	GGWCC	2 cut(s)	188, 986
AxyI	CCTNAGG	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	373
BarI	GAAGNNNNNNTAC	2 cut(s)	953, 985
BauI	CACGAG	1 cut(s)	504
BbrPI	CACGTG	1 cut(s)	857
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	248, 373
BbvI	GCAGC	5 cut(s)	31, 61, 551, 728, 838
BccI	CCATC	4 cut(s)	38, 205, 448, 550
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	14
BciVI	GTATCC	2 cut(s)	355, 392
BclI	TGATCA	1 cut(s)	1026
BcoDI	GTCTC	2 cut(s)	479, 1070
BfmI	CTRYAG	2 cut(s)	226, 1060
BfuI	GTATCC	2 cut(s)	355, 392
BglII	AGATCT	1 cut(s)	966
BisI	GCNGC	5 cut(s)	20, 75, 540, 717, 852
BlsI	GCNGC	5 cut(s)	21, 76, 541, 718, 853
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	2 cut(s)	188, 986
BmgT120I	GGNCC	3 cut(s)	113, 188, 986
BmiI	GGNNCC	2 cut(s)	115, 999
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	4 cut(s)	86, 94, 728, 838
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	2 cut(s)	381, 611
BpuEI	CTTGAG	2 cut(s)	719, 876
BsaAI	YACGTR	1 cut(s)	857
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	994
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 495, 712, 810
Bse1I	ACTGG	3 cut(s)	331, 594, 780
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	1046
BseAI	TCCGGA	1 cut(s)	994
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	5 cut(s)	13, 109, 197, 280, 719
BseLI	CCNNNNNNNGG	4 cut(s)	35, 495, 712, 810
BseMI	GCAATG	1 cut(s)	1046
BseMII	CTCAG	3 cut(s)	113, 231, 1083
BseNI	ACTGG	3 cut(s)	331, 594, 780
BseRI	GAGGAG	3 cut(s)	539, 608, 879
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	5 cut(s)	31, 61, 551, 728, 838
BseYI	CCCAGC	1 cut(s)	387
BsgI	GTGCAG	1 cut(s)	837
BshFI	GGCC	2 cut(s)	114, 183
BsiHKAI	GWGCWC	2 cut(s)	248, 373
BsiSI	CCGG	1 cut(s)	995
BslFI	GGGAC	2 cut(s)	12, 686
BslI	CCNNNNNNNGG	4 cut(s)	35, 495, 712, 810
BsmAI	GTCTC	2 cut(s)	479, 1070
BsmFI	GGGAC	2 cut(s)	12, 686
BsnI	GGCC	2 cut(s)	114, 183
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	248, 373
Bsp13I	TCCGGA	1 cut(s)	994
Bsp143I	GATC	2 cut(s)	966, 1026
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	2 cut(s)	114, 183
BspCNI	CTCAG	3 cut(s)	112, 232, 1084
BspEI	TCCGGA	1 cut(s)	994
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	115, 999
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	1046
BsrI	ACTGG	3 cut(s)	331, 594, 780
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	966, 1026
BssSI	CACGAG	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	184
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	4 cut(s)	520, 609, 769, 1064
Bst6I	CTCTTC	1 cut(s)	1073
BstBAI	YACGTR	1 cut(s)	857
BstC8I	GCNNGC	4 cut(s)	816, 877, 923, 927
BstDEI	CTNAG	4 cut(s)	99, 132, 240, 1092
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	5 cut(s)	13, 109, 197, 280, 719
BstKTI	GATC	2 cut(s)	969, 1029
BstMAI	GTCTC	2 cut(s)	479, 1070
BstMBI	GATC	2 cut(s)	966, 1026
BstMWI	GCNNNNNNNGC	1 cut(s)	1081
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	2 cut(s)	216, 383
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	2 cut(s)	226, 1060
BstSLI	GKGCMC	1 cut(s)	373
BstV1I	GCAGC	5 cut(s)	31, 61, 551, 728, 838
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	966
BstXI	CCANNNNNNTGG	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	966
Bsu36I	CCTNAGG	1 cut(s)	99
BsuI	GTATCC	2 cut(s)	355, 392
BsuRI	GGCC	2 cut(s)	114, 183
BtgI	CCRYGG	1 cut(s)	184
BtgZI	GCGATG	1 cut(s)	651
BtsCI	GGATG	5 cut(s)	13, 109, 197, 280, 719
BtsIMutI	CAGTG	1 cut(s)	765
Cac8I	GCNNGC	4 cut(s)	816, 877, 923, 927
CaiI	CAGNNNCTG	1 cut(s)	851
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	113, 188, 986
Csp6I	GTAC	2 cut(s)	667, 773
CviQI	GTAC	2 cut(s)	667, 773
DdeI	CTNAG	4 cut(s)	99, 132, 240, 1092
DpnI	GATC	2 cut(s)	968, 1028
DpnII	GATC	2 cut(s)	966, 1026
Eam1104I	CTCTTC	1 cut(s)	1073
EarI	CTCTTC	1 cut(s)	1073
Eco130I	CCWWGG	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	2 cut(s)	188, 986
Eco57I	CTGAAG	2 cut(s)	1028, 1054
Eco72I	CACGTG	1 cut(s)	857
Eco81I	CCTNAGG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	2 cut(s)	12, 686
FbaI	TGATCA	1 cut(s)	1026
Fnu4HI	GCNGC	5 cut(s)	20, 75, 540, 717, 852
FokI	GGATG	5 cut(s)	20, 116, 184, 287, 706
Fsp4HI	GCNGC	5 cut(s)	20, 75, 540, 717, 852
GluI	GCNGC	5 cut(s)	20, 75, 540, 717, 852
GsaI	CCCAGC	1 cut(s)	391
GsuI	CTGGAG	2 cut(s)	381, 611
HaeIII	GGCC	2 cut(s)	114, 183
HapII	CCGG	1 cut(s)	995
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	995
HphI	GGTGA	2 cut(s)	59, 521
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	954, 986
Hpy188III	TCNNGA	5 cut(s)	41, 101, 149, 893, 995
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	5 cut(s)	173, 349, 404, 488, 955
HpyCH4III	ACNGT	4 cut(s)	520, 609, 769, 1064
HpyCH4IV	ACGT	4 cut(s)	94, 367, 432, 856
HpyCH4V	TGCA	7 cut(s)	77, 223, 371, 604, 765, 854, 908
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1081
HpyF3I	CTNAG	4 cut(s)	99, 132, 240, 1092
HpySE526I	ACGT	4 cut(s)	94, 367, 432, 856
Kpn2I	TCCGGA	1 cut(s)	994
Ksp22I	TGATCA	1 cut(s)	1026
Kzo9I	GATC	2 cut(s)	966, 1026
LmnI	GCTCC	3 cut(s)	16, 536, 892
Lsp1109I	GCAGC	5 cut(s)	31, 61, 551, 728, 838
LweI	GCATC	4 cut(s)	86, 94, 728, 838
MaeII	ACGT	4 cut(s)	94, 367, 432, 856
MaeIII	GTNAC	1 cut(s)	915
MalI	GATC	2 cut(s)	968, 1028
MboI	GATC	2 cut(s)	966, 1026
MboII	GAAGA	7 cut(s)	137, 275, 561, 758, 794, 872, 1060
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	1 cut(s)	966
MhlI	GDGCHC	2 cut(s)	248, 373
MluCI	AATT	7 cut(s)	141, 257, 392, 653, 881, 978, 1018
MlyI	GAGTC	1 cut(s)	34
MnlI	CCTC	8 cut(s)	40, 108, 517, 522, 574, 586, 589, 900
MroI	TCCGGA	1 cut(s)	994
MroXI	GAANNNNTTC	3 cut(s)	144, 418, 864
MseI	TTAA	5 cut(s)	126, 159, 174, 690, 708
MspI	CCGG	1 cut(s)	995
MspR9I	CCNGG	1 cut(s)	14
MunI	CAATTG	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	1081
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	966, 1026
NlaIV	GGNNCC	2 cut(s)	115, 999
NspI	RCATGY	2 cut(s)	216, 383
PagI	TCATGA	1 cut(s)	148
PciI	ACATGT	1 cut(s)	379
PdmI	GAANNNNTTC	3 cut(s)	144, 418, 864
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	5 cut(s)	21, 76, 541, 718, 853
PleI	GAGTC	1 cut(s)	33
PmaCI	CACGTG	1 cut(s)	857
PmlI	CACGTG	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	33
Ppu21I	YACGTR	1 cut(s)	857
PscI	ACATGT	1 cut(s)	379
Psp1406I	AACGTT	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	12
PspCI	CACGTG	1 cut(s)	857
PspFI	CCCAGC	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	2 cut(s)	115, 999
PspPI	GGNCC	3 cut(s)	113, 188, 986
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	1 cut(s)	966
RsaI	GTAC	2 cut(s)	668, 774
RsaNI	GTAC	2 cut(s)	667, 773
SaqAI	TTAA	5 cut(s)	126, 159, 174, 690, 708
SatI	GCNGC	5 cut(s)	20, 75, 540, 717, 852
Sau3AI	GATC	2 cut(s)	966, 1026
Sau96I	GGNCC	3 cut(s)	113, 188, 986
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	248, 373
SfaNI	GCATC	4 cut(s)	86, 94, 728, 838
SfcI	CTRYAG	2 cut(s)	226, 1060
SinI	GGWCC	2 cut(s)	188, 986
SmlI	CTYRAG	2 cut(s)	734, 891
SmoI	CTYRAG	2 cut(s)	734, 891
Sse9I	AATT	7 cut(s)	141, 257, 392, 653, 881, 978, 1018
SsiI	CCGC	1 cut(s)	89
SspI	AATATT	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	4 cut(s)	520, 609, 769, 1064
TaiI	ACGT	4 cut(s)	97, 370, 435, 859
TaqI	TCGA	1 cut(s)	209
TasI	AATT	7 cut(s)	141, 257, 392, 653, 881, 978, 1018
TatI	WGTACW	2 cut(s)	666, 772
Tru1I	TTAA	5 cut(s)	126, 159, 174, 690, 708
Tru9I	TTAA	5 cut(s)	126, 159, 174, 690, 708
TscAI	CASTG	1 cut(s)	772
TseI	GCWGC	5 cut(s)	19, 74, 539, 716, 851
TspDTI	ATGAA	9 cut(s)	74, 137, 291, 368, 474, 627, 634, 759, 801
TspGWI	ACGGA	2 cut(s)	417, 576
TspRI	CASTG	1 cut(s)	772
VneI	GTGCAC	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	188, 986
XapI	RAATTY	4 cut(s)	141, 257, 881, 978
XceI	RCATGY	2 cut(s)	216, 383
XmnI	GAANNNNTTC	3 cut(s)	144, 418, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.