Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8449809.1

Orthogroup ID

OG0009067

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1689

Gene Structure 1689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8449809.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

gtcaagatggtgaaaacgaaatagtcattgaaaatgctgcatctgttcatggggaacctcctcaggatgctaatggccccccaaaagttgattccaaggaagaaattcttcatgacaaagtcaagaagcaaatcattaaggaaggccatggtccgataccatccaaatattcgacatgcttcttgcattacagggcatggactgaaagcacacagcataagtttgaagacacgtgggacgaacaacgaccacttgaaatgattttaggaaaagagaaaaaagaattgactggcttggctattggcgtatccagcatgaaggctggagaacgtgccctattacatgtaggctgggagttgggatacggaaaagaaggaaacttttctttcccaaatgttccaccctcagcagatatattgtatgaagttgagcttattggatttgatgagaccaaagaagggaaagctcgcggtgatatgactgtggaggagaggattggagcagcagatagaagaaagatggatggaaatgctttatttaaggaggaaaaactggaggaggctatgcaacagtatgaaatggcaatagcatatatgggtgatgacttcatgttccaattgtttgggaagtacagggacatggctttggctgttaaaaatccatgccaccttaacatggcagcctccctgataaagcttaagcgatatgaagaagccattggacaatgcactgttgtaagtatatcaaatcacaagaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

252

Amino Acids

28.41

Weight (kDa)

5.39

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260
prunus_persica	Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1
pyrus_communis	pycom02g25960
rosa_chinensis	RchiOBHm_Chr1g0317011
rosa_laevigata	RLG00000030633
rosa_multiflora	Rmu_co8449809.1_g000001 Rmu_sc0006455.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330740
rosa_rugosa	Rorug01G0013800
rosa_samantha	Rh1AG024900 Rh1BG021700 Rh1CG023300 Rh1DG022100 Rh5BG177800
rosa_wichuraiana	Rw1G001720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	470
AciI	CCGC	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	2 cut(s)	458, 675
AflII	CTTAAG	1 cut(s)	697
AflIII	ACRYGT	2 cut(s)	230, 342
AgsI	TTSAA	3 cut(s)	31, 226, 256
AjuI	GAANNNNNNNTTGG	4 cut(s)	75, 107, 701, 733
AluBI	AGCT	3 cut(s)	432, 466, 696
AluI	AGCT	3 cut(s)	432, 466, 696
Alw26I	GTCTC	1 cut(s)	442
AoxI	GGCC	2 cut(s)	75, 144
ApeKI	GCWGC	3 cut(s)	37, 502, 679
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	3 cut(s)	104, 107, 381
AspS9I	GGNCC	2 cut(s)	76, 151
AsuHPI	GGTGA	3 cut(s)	22, 484, 610
AvaII	GGWCC	1 cut(s)	151
AxyI	CCTNAGG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	336
BbrPI	CACGTG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	233
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	24, 514, 691
BccI	CCATC	3 cut(s)	168, 513, 517
BciVI	GTATCC	2 cut(s)	318, 355
BcoDI	GTCTC	1 cut(s)	442
BfrI	CTTAAG	1 cut(s)	697
BfuI	GTATCC	2 cut(s)	318, 355
BisI	GCNGC	3 cut(s)	38, 503, 680
BlsI	GCNGC	3 cut(s)	39, 504, 681
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	76, 151
BmiI	GGNNCC	2 cut(s)	56, 78
BmsI	GCATC	2 cut(s)	49, 57
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	2 cut(s)	344, 574
Bpu10I	CCTNAGC	1 cut(s)	405
BsaAI	YACGTR	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	95, 147
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 675
Bse1I	ACTGG	2 cut(s)	294, 557
Bse21I	CCTNAGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	95, 147
BseGI	GGATG	3 cut(s)	72, 160, 528
BseLI	CCNNNNNNNGG	2 cut(s)	458, 675
BseMII	CTCAG	2 cut(s)	76, 419
BseNI	ACTGG	2 cut(s)	294, 557
BseRI	GAGGAG	3 cut(s)	50, 502, 571
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	3 cut(s)	24, 514, 691
BseYI	CCCAGC	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	470
BshFI	GGCC	2 cut(s)	77, 146
BslFI	GGGAC	2 cut(s)	250, 649
BslI	CCNNNNNNNGG	2 cut(s)	458, 675
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	2 cut(s)	250, 649
BsnI	GGCC	2 cut(s)	77, 146
Bso31I	GGTCTC	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	2 cut(s)	77, 146
BspCNI	CTCAG	2 cut(s)	75, 418
BspFNI	CGCG	1 cut(s)	470
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	56, 78
BspTI	CTTAAG	1 cut(s)	697
BspTNI	GGTCTC	1 cut(s)	442
BsrI	ACTGG	2 cut(s)	294, 557
BssECI	CCNNGG	2 cut(s)	95, 147
BssT1I	CCWWGG	2 cut(s)	95, 147
Bst4CI	ACNGT	3 cut(s)	483, 572, 732
BstAFI	CTTAAG	1 cut(s)	697
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	2 cut(s)	62, 405
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	3 cut(s)	72, 160, 528
BstFNI	CGCG	1 cut(s)	470
BstMAI	GTCTC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNSI	RCATGY	2 cut(s)	179, 346
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	3 cut(s)	24, 514, 691
BstV2I	GAAGAC	1 cut(s)	233
BstXI	CCANNNNNNTGG	1 cut(s)	622
Bsu36I	CCTNAGG	1 cut(s)	62
BsuI	GTATCC	2 cut(s)	318, 355
BsuRI	GGCC	2 cut(s)	77, 146
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	3 cut(s)	72, 160, 528
BtsIMutI	CAGTG	1 cut(s)	728
Cac8I	GCNNGC	1 cut(s)	468
CciI	TCATGA	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	76, 151
Csp6I	GTAC	1 cut(s)	630
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	2 cut(s)	62, 405
Eco130I	CCWWGG	2 cut(s)	95, 147
Eco31I	GGTCTC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	151
Eco72I	CACGTG	1 cut(s)	233
Eco81I	CCTNAGG	1 cut(s)	62
EcoT14I	CCWWGG	2 cut(s)	95, 147
ErhI	CCWWGG	2 cut(s)	95, 147
FalI	AAGNNNNNCTT	4 cut(s)	92, 124, 416, 448
FaqI	GGGAC	2 cut(s)	250, 649
Fnu4HI	GCNGC	3 cut(s)	38, 503, 680
FokI	GGATG	3 cut(s)	79, 147, 535
Fsp4HI	GCNGC	3 cut(s)	38, 503, 680
GluI	GCNGC	3 cut(s)	38, 503, 680
GsaI	CCCAGC	1 cut(s)	354
GsuI	CTGGAG	2 cut(s)	344, 574
HaeIII	GGCC	2 cut(s)	77, 146
HindIII	AAGCTT	1 cut(s)	694
HinfI	GANTC	1 cut(s)	91
HphI	GGTGA	3 cut(s)	22, 484, 610
Hpy188I	TCNGA	1 cut(s)	155
Hpy188III	TCNNGA	4 cut(s)	4, 64, 112, 123
HpyAV	CCTTC	4 cut(s)	136, 312, 367, 451
HpyCH4III	ACNGT	3 cut(s)	483, 572, 732
HpyCH4IV	ACGT	2 cut(s)	232, 330
HpyCH4V	TGCA	4 cut(s)	40, 186, 567, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	2 cut(s)	62, 405
HpySE526I	ACGT	2 cut(s)	232, 330
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	9 cut(s)	49, 177, 275, 308, 324, 336, 538, 618, 700
Lsp1109I	GCAGC	3 cut(s)	24, 514, 691
LweI	GCATC	2 cut(s)	49, 57
MaeII	ACGT	2 cut(s)	232, 330
MboII	GAAGA	5 cut(s)	100, 112, 238, 524, 721
MfeI	CAATTG	1 cut(s)	616
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	3 cut(s)	104, 283, 616
MnlI	CCTC	9 cut(s)	68, 71, 414, 480, 485, 537, 549, 552, 693
MroXI	GAANNNNTTC	3 cut(s)	104, 107, 381
MseI	TTAA	5 cut(s)	137, 539, 653, 671, 698
MspCI	CTTAAG	1 cut(s)	697
MunI	CAATTG	1 cut(s)	616
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	1 cut(s)	311
NcoI	CCATGG	1 cut(s)	147
NlaIV	GGNNCC	2 cut(s)	56, 78
NspI	RCATGY	2 cut(s)	179, 346
PagI	TCATGA	1 cut(s)	111
PciI	ACATGT	1 cut(s)	342
PdmI	GAANNNNTTC	3 cut(s)	104, 107, 381
PfeI	GAWTC	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	39, 504, 681
PmaCI	CACGTG	1 cut(s)	233
PmlI	CACGTG	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	233
PscI	ACATGT	1 cut(s)	342
PspCI	CACGTG	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	56, 78
PspPI	GGNCC	2 cut(s)	76, 151
PsyI	GACNNNGTC	1 cut(s)	118
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
SaqAI	TTAA	5 cut(s)	137, 539, 653, 671, 698
SatI	GCNGC	3 cut(s)	38, 503, 680
Sau96I	GGNCC	2 cut(s)	76, 151
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	7 cut(s)	60, 235, 333, 434, 468, 671, 698
SfaNI	GCATC	2 cut(s)	49, 57
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	697
SmoI	CTYRAG	1 cut(s)	697
Sse9I	AATT	3 cut(s)	104, 283, 616
SsiI	CCGC	1 cut(s)	470
SspI	AATATT	1 cut(s)	169
StyI	CCWWGG	2 cut(s)	95, 147
TaaI	ACNGT	3 cut(s)	483, 572, 732
TaiI	ACGT	2 cut(s)	235, 333
TaqI	TCGA	1 cut(s)	172
TasI	AATT	3 cut(s)	104, 283, 616
TatI	WGTACW	1 cut(s)	629
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	5 cut(s)	137, 539, 653, 671, 698
Tru9I	TTAA	5 cut(s)	137, 539, 653, 671, 698
TscAI	CASTG	1 cut(s)	735
TseI	GCWGC	3 cut(s)	37, 502, 679
TspDTI	ATGAA	7 cut(s)	37, 100, 331, 437, 590, 597, 722
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	735
Tth111I	GACNNNGTC	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	697
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	2 cut(s)	179, 346
XmnI	GAANNNNTTC	3 cut(s)	104, 107, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.