Rh1BG021700

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009067
Physical Location & Seq
Forward (+)
2835485 .. 2839476
3992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG021700.1

Sequence Viewer

Length: 1098 bp
ATGGAGGATGTCCAGGAGCAGCAAAGTCAATCACTTGGTCAAGATGGTGAAAATGAAATAGTCATTGAAAATGCTGCATCTGTTCATGGGGAACCTCCTCAGGATGCTAATGGCCCCCCAAAAGTTGATTCCAAGGAAGAAATTCTTCATGACAAAGTCAAGAAGCAAATCATTAAGGAAGGCCATGGTCCGATACCATCCAAATATTCAACATGCTTCTTGCATTACAGGGCATGGACTGAAAGCACACAGCATAAGTTTGAAGACACGTGGGACGAACAACGACCACTTGAAATGATTTTAGGAAAAGAGAAAAAAGAAATGACTGGCTTGGCTATTGGCGTATCCAGCATGAAGGCTGGAGAACGTGCCCTATTACATGTAGGCTGGGAGTTGGGATACGGAAAAGAAGGAAACTTTTCTTTCCCAAACGTTCCACCCTCAGCAGATATATTGTATGAAGTTGAGCTTATTGGATTTGATGAGACCAAAGAAGGGAAAGCTCGCGGTGATATGACTGTGGAGGAGAGGATTGGAGCAGCAGATAGAAGAAAGATGGATGGAAATGCTTTATTTAAGGAGGAAAAACTGGAGGAGGCTATGCAACAGTATGAAATGGCAATAGCATATATGGGTGATGACTTCATGTTCCAATTGTTTGGGAAGTACAGAGACATGGCTTTGGCTGTTAAAAATCCATGCCACCTTAACATGGCAGCCTCCCTGATAAAGCTCAAGCGATATGAAGAAGCCATTGGACAATGCACTGTTGTACTGGCAGAAGATGAAAACAATGTCAAAGCCCTATTTAGGCGAGCAAAAGCCAGAGCAAAGCTTGGGCAGACAGATGCTGCCCGCGAAGATTTTCTAAAGGCACGTAAGTTTGCTCCTCAAGACAAAGCTATTGCAAGAGAGTTACGCCTGCTTGCTGAACATGACAAGGCTGTTTATCAGAAACAGAAGGAGATCTACAAGGGAATTTTCGGACCAACACCAGATCCTAAACCCAAGCGAACGAAATGGTTGATCATTATTTGGCAATGGCTGTTGTCATTGTTCTACAGTATCTTCAGGCGTGAGAAGCGAAAAGCTGAGTAG

Protein Analysis

365

Amino Acids

41.76

Weight (kDa)

6.32

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 66 - 158 2.6e-16 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 507, 858
AciI CCGC 2 cut(s) 507, 856
AclI AACGTT 1 cut(s) 432
AclWI GGATC 1 cut(s) 992
AcsI RAATTY 2 cut(s) 141, 978
AcuI CTGAAG 1 cut(s) 1054
AcvI CACGTG 1 cut(s) 270
AfaI GTAC 2 cut(s) 668, 774
AfiI CCNNNNNNNGG 3 cut(s) 495, 712, 810
AflIII ACRYGT 2 cut(s) 267, 379
AgsI TTSAA 4 cut(s) 68, 210, 263, 293
AjnI CCWGG 1 cut(s) 12
AjuI GAANNNNNNNTTGG 4 cut(s) 112, 144, 738, 770
AluBI AGCT 6 cut(s) 469, 503, 733, 835, 902, 1091
AluI AGCT 6 cut(s) 469, 503, 733, 835, 902, 1091
Alw26I GTCTC 2 cut(s) 479, 666
AlwI GGATC 1 cut(s) 992
AlwNI CAGNNNCTG 1 cut(s) 851
AoxI GGCC 2 cut(s) 112, 181
ApeKI GCWGC 5 cut(s) 19, 74, 539, 716, 851
ApoI RAATTY 2 cut(s) 141, 978
Asp700I GAANNNNTTC 4 cut(s) 141, 144, 418, 864
AspS9I GGNCC 3 cut(s) 113, 188, 986
AsuHPI GGTGA 3 cut(s) 59, 521, 647
AvaII GGWCC 2 cut(s) 188, 986
AxyI CCTNAGG 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 373
BarI GAAGNNNNNNTAC 2 cut(s) 953, 985
BbrPI CACGTG 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 270
BbvCI CCTCAGC 1 cut(s) 442
BbvI GCAGC 5 cut(s) 31, 61, 551, 728, 838
BccI CCATC 4 cut(s) 38, 205, 550, 554
BciT130I CCWGG 1 cut(s) 14
BciVI GTATCC 2 cut(s) 355, 392
BclI TGATCA 1 cut(s) 1026
BcoDI GTCTC 2 cut(s) 479, 666
BfmI CTRYAG 1 cut(s) 1060
BfuI GTATCC 2 cut(s) 355, 392
BglII AGATCT 1 cut(s) 966
BisI GCNGC 5 cut(s) 20, 75, 540, 717, 852
BlsI GCNGC 5 cut(s) 21, 76, 541, 718, 853
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 2 cut(s) 188, 986
BmgT120I GGNCC 3 cut(s) 113, 188, 986
BmiI GGNNCC 2 cut(s) 93, 115
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 3 cut(s) 86, 94, 838
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 2 cut(s) 381, 611
Bpu10I CCTNAGC 1 cut(s) 442
BpuEI CTTGAG 2 cut(s) 719, 876
BsaAI YACGTR 2 cut(s) 270, 878
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 2 cut(s) 132, 184
Bsc4I CCNNNNNNNGG 3 cut(s) 495, 712, 810
Bse1I ACTGG 3 cut(s) 331, 594, 780
Bse21I CCTNAGG 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 1046
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 132, 184
BseGI GGATG 4 cut(s) 13, 109, 197, 565
BseLI CCNNNNNNNGG 3 cut(s) 495, 712, 810
BseMI GCAATG 1 cut(s) 1046
BseMII CTCAG 3 cut(s) 113, 456, 1083
BseNI ACTGG 3 cut(s) 331, 594, 780
BseRI GAGGAG 4 cut(s) 87, 539, 608, 879
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 5 cut(s) 31, 61, 551, 728, 838
BseYI CCCAGC 1 cut(s) 387
Bsh1236I CGCG 2 cut(s) 507, 858
BshFI GGCC 2 cut(s) 114, 183
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 3 cut(s) 495, 712, 810
BsmAI GTCTC 2 cut(s) 479, 666
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 2 cut(s) 114, 183
Bso31I GGTCTC 1 cut(s) 479
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 3 cut(s) 966, 997, 1026
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 2 cut(s) 507, 856
BspANI GGCC 2 cut(s) 114, 183
BspCNI CTCAG 3 cut(s) 112, 455, 1084
BspFNI CGCG 2 cut(s) 507, 858
BspHI TCATGA 1 cut(s) 148
BspLI GGNNCC 2 cut(s) 93, 115
BspPI GGATC 1 cut(s) 992
BspTNI GGTCTC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 1046
BsrI ACTGG 3 cut(s) 331, 594, 780
BssECI CCNNGG 2 cut(s) 132, 184
BssMI GATC 3 cut(s) 966, 997, 1026
BssT1I CCWWGG 2 cut(s) 132, 184
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 4 cut(s) 520, 609, 769, 1064
BstBAI YACGTR 2 cut(s) 270, 878
BstC8I GCNNGC 5 cut(s) 505, 816, 856, 923, 927
BstDEI CTNAG 3 cut(s) 99, 442, 1092
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 4 cut(s) 13, 109, 197, 565
BstFNI CGCG 2 cut(s) 507, 858
BstKTI GATC 3 cut(s) 969, 1000, 1029
BstMAI GTCTC 2 cut(s) 479, 666
BstMBI GATC 3 cut(s) 966, 997, 1026
BstMWI GCNNNNNNNGC 2 cut(s) 348, 1081
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 2 cut(s) 216, 383
BstSCI CCNGG 1 cut(s) 12
BstSFI CTRYAG 1 cut(s) 1060
BstSLI GKGCMC 1 cut(s) 373
BstUI CGCG 2 cut(s) 507, 858
BstV1I GCAGC 5 cut(s) 31, 61, 551, 728, 838
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 2 cut(s) 966, 997
BstXI CCANNNNNNTGG 1 cut(s) 659
BstYI RGATCY 2 cut(s) 966, 997
Bsu36I CCTNAGG 1 cut(s) 99
BsuI GTATCC 2 cut(s) 355, 392
BsuRI GGCC 2 cut(s) 114, 183
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 4 cut(s) 13, 109, 197, 565
BtsIMutI CAGTG 1 cut(s) 765
Cac8I GCNNGC 5 cut(s) 505, 816, 856, 923, 927
CaiI CAGNNNCTG 1 cut(s) 851
CciI TCATGA 1 cut(s) 148
Cfr13I GGNCC 3 cut(s) 113, 188, 986
Csp6I GTAC 2 cut(s) 667, 773
CviQI GTAC 2 cut(s) 667, 773
DdeI CTNAG 3 cut(s) 99, 442, 1092
DpnI GATC 3 cut(s) 968, 999, 1028
DpnII GATC 3 cut(s) 966, 997, 1026
Eco130I CCWWGG 2 cut(s) 132, 184
Eco31I GGTCTC 1 cut(s) 479
Eco47I GGWCC 2 cut(s) 188, 986
Eco57I CTGAAG 1 cut(s) 1054
Eco72I CACGTG 1 cut(s) 270
Eco81I CCTNAGG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 2 cut(s) 132, 184
ErhI CCWWGG 2 cut(s) 132, 184
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 453, 485
FaqI GGGAC 1 cut(s) 287
FauI CCCGC 1 cut(s) 863
FbaI TGATCA 1 cut(s) 1026
Fnu4HI GCNGC 5 cut(s) 20, 75, 540, 717, 852
FokI GGATG 4 cut(s) 20, 116, 184, 572
Fsp4HI GCNGC 5 cut(s) 20, 75, 540, 717, 852
GluI GCNGC 5 cut(s) 20, 75, 540, 717, 852
GsaI CCCAGC 1 cut(s) 391
GsuI CTGGAG 2 cut(s) 381, 611
HaeIII GGCC 2 cut(s) 114, 183
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 1 cut(s) 128
HphI GGTGA 3 cut(s) 59, 521, 647
Hpy188I TCNGA 3 cut(s) 192, 954, 986
Hpy188III TCNNGA 5 cut(s) 41, 101, 149, 160, 893
HpyAV CCTTC 5 cut(s) 173, 349, 404, 488, 955
HpyCH4III ACNGT 4 cut(s) 520, 609, 769, 1064
HpyCH4IV ACGT 4 cut(s) 269, 367, 432, 877
HpyCH4V TGCA 5 cut(s) 77, 223, 604, 765, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 1081
HpyF3I CTNAG 3 cut(s) 99, 442, 1092
HpySE526I ACGT 4 cut(s) 269, 367, 432, 877
Ksp22I TGATCA 1 cut(s) 1026
Kzo9I GATC 3 cut(s) 966, 997, 1026
LmnI GCTCC 3 cut(s) 16, 536, 892
Lsp1109I GCAGC 5 cut(s) 31, 61, 551, 728, 838
LweI GCATC 3 cut(s) 86, 94, 838
MaeII ACGT 4 cut(s) 269, 367, 432, 877
MaeIII GTNAC 1 cut(s) 915
MalI GATC 3 cut(s) 968, 999, 1028
MboI GATC 3 cut(s) 966, 997, 1026
MboII GAAGA 8 cut(s) 137, 149, 275, 561, 758, 794, 872, 1060
MfeI CAATTG 1 cut(s) 653
MflI RGATCY 2 cut(s) 966, 997
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 3 cut(s) 141, 653, 978
MroXI GAANNNNTTC 4 cut(s) 141, 144, 418, 864
MseI TTAA 4 cut(s) 174, 576, 690, 708
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 653
MvaI CCWGG 1 cut(s) 14
MvnI CGCG 2 cut(s) 507, 858
MwoI GCNNNNNNNGC 2 cut(s) 348, 1081
NcoI CCATGG 1 cut(s) 184
NdeII GATC 3 cut(s) 966, 997, 1026
NlaIV GGNNCC 2 cut(s) 93, 115
NspI RCATGY 2 cut(s) 216, 383
PagI TCATGA 1 cut(s) 148
PciI ACATGT 1 cut(s) 379
PdmI GAANNNNTTC 4 cut(s) 141, 144, 418, 864
PfeI GAWTC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 12
PkrI GCNGC 5 cut(s) 21, 76, 541, 718, 853
PmaCI CACGTG 1 cut(s) 270
PmlI CACGTG 1 cut(s) 270
Ppu21I YACGTR 2 cut(s) 270, 878
PscI ACATGT 1 cut(s) 379
Psp1406I AACGTT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 12
PspCI CACGTG 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 387
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 93, 115
PspPI GGNCC 3 cut(s) 113, 188, 986
PstNI CAGNNNCTG 1 cut(s) 851
PsuI RGATCY 2 cut(s) 966, 997
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 2 cut(s) 668, 774
RsaNI GTAC 2 cut(s) 667, 773
SaqAI TTAA 4 cut(s) 174, 576, 690, 708
SatI GCNGC 5 cut(s) 20, 75, 540, 717, 852
Sau3AI GATC 3 cut(s) 966, 997, 1026
Sau96I GGNCC 3 cut(s) 113, 188, 986
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 3 cut(s) 86, 94, 838
SfcI CTRYAG 1 cut(s) 1060
SinI GGWCC 2 cut(s) 188, 986
SmlI CTYRAG 2 cut(s) 734, 891
SmoI CTYRAG 2 cut(s) 734, 891
Sse9I AATT 3 cut(s) 141, 653, 978
SsiI CCGC 2 cut(s) 507, 856
SspI AATATT 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 2 cut(s) 132, 184
TaaI ACNGT 4 cut(s) 520, 609, 769, 1064
TaiI ACGT 4 cut(s) 272, 370, 435, 880
TasI AATT 3 cut(s) 141, 653, 978
TatI WGTACW 2 cut(s) 666, 772
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 4 cut(s) 174, 576, 690, 708
Tru9I TTAA 4 cut(s) 174, 576, 690, 708
TscAI CASTG 1 cut(s) 772
TseI GCWGC 5 cut(s) 19, 74, 539, 716, 851
TspDTI ATGAA 9 cut(s) 69, 74, 137, 368, 474, 627, 634, 759, 801
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 1 cut(s) 772
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 188, 986
XapI RAATTY 2 cut(s) 141, 978
XceI RCATGY 2 cut(s) 216, 383
XmnI GAANNNNTTC 4 cut(s) 141, 144, 418, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.