Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009067

Physical Location & Seq

Genomic Coordinates Forward (+)

19269519 .. 19270314

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG177800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGTGATGACTTCATGTTCCAATTGTTTGGGAAGTACAGGGACATGGCTCTGGCTGTTAAACATCCATGCCACCTTAACATGGCAGCCTCCCTGATAAAGCTCAAGCGATATGAAGAAGCCATTGGACAATGCACTATTGTACTGGCACAAGATGAAAACAACGTCAAAGCCCTATTTAGGCGAGCAAAAGCTAGAGCAGAGCTTGGGCAGACAGATGCTGCCCGTGAAGATTTTCTAAAGGCACGTAAGTTTGCTCCTCAAGACAAAGCTATTGCAAGAGAGTTACGTCTGCTTGCCGAACATGACAAGGCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

106

Amino Acids

12.08

Weight (kDa)

9.23

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	27 - 89	9.5e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260
prunus_persica	Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1
pyrus_communis	pycom02g25960
rosa_chinensis	RchiOBHm_Chr1g0317011
rosa_laevigata	RLG00000030633
rosa_multiflora	Rmu_co8449809.1_g000001 Rmu_sc0006455.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330740
rosa_rugosa	Rorug01G0013800
rosa_samantha	Rh1AG024900 Rh1BG021700 Rh1CG023300 Rh1DG022100 Rh5BG177800
rosa_wichuraiana	Rw1G001720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	38, 144
AfiI	CCNNNNNNNGG	2 cut(s)	82, 180
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AluBI	AGCT	4 cut(s)	103, 194, 205, 272
AluI	AGCT	4 cut(s)	103, 194, 205, 272
AlwNI	CAGNNNCTG	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	86, 221
Asp700I	GAANNNNTTC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	98, 208
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	2 cut(s)	87, 222
BlsI	GCNGC	2 cut(s)	88, 223
BmsI	GCATC	1 cut(s)	208
BpuEI	CTTGAG	2 cut(s)	89, 246
BsaAI	YACGTR	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 180
Bse1I	ACTGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	2 cut(s)	82, 180
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	98, 208
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	82, 180
BsmFI	GGGAC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	150
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	186, 297
BstF5I	GGATG	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	98, 208
BstXI	CCANNNNNNTGG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	186, 297
CaiI	CAGNNNCTG	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	37, 143
CviAII	CATG	5 cut(s)	16, 46, 69, 82, 305
CviQI	GTAC	2 cut(s)	37, 143
FaeI	CATG	5 cut(s)	19, 49, 72, 85, 308
FaiI	YATR	6 cut(s)	17, 47, 70, 83, 114, 306
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	5 cut(s)	15, 45, 68, 81, 304
Fnu4HI	GCNGC	2 cut(s)	87, 222
FokI	GGATG	1 cut(s)	51
Fsp4HI	GCNGC	2 cut(s)	87, 222
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	2 cut(s)	87, 222
Hin1II	CATG	5 cut(s)	19, 49, 72, 85, 308
HphI	GGTGA	1 cut(s)	17
Hpy188III	TCNNGA	1 cut(s)	263
HpyCH4IV	ACGT	3 cut(s)	165, 247, 289
HpyCH4V	TGCA	2 cut(s)	135, 278
HpySE526I	ACGT	3 cut(s)	165, 247, 289
Hsp92II	CATG	5 cut(s)	19, 49, 72, 85, 308
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	4 cut(s)	25, 38, 107, 131
Lsp1109I	GCAGC	2 cut(s)	98, 208
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	3 cut(s)	165, 247, 289
MaeIII	GTNAC	1 cut(s)	285
MboII	GAAGA	2 cut(s)	128, 242
MfeI	CAATTG	1 cut(s)	23
MluCI	AATT	1 cut(s)	23
MnlI	CCTC	2 cut(s)	100, 270
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	2 cut(s)	60, 78
MunI	CAATTG	1 cut(s)	23
NlaIII	CATG	5 cut(s)	19, 49, 72, 85, 308
PdmI	GAANNNNTTC	1 cut(s)	234
PkrI	GCNGC	2 cut(s)	88, 223
Ppu21I	YACGTR	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	38, 144
RsaNI	GTAC	2 cut(s)	37, 143
SaqAI	TTAA	2 cut(s)	60, 78
SatI	GCNGC	2 cut(s)	87, 222
SetI	ASST	8 cut(s)	78, 105, 168, 196, 207, 250, 274, 292
SfaNI	GCATC	1 cut(s)	208
SmlI	CTYRAG	2 cut(s)	104, 261
SmoI	CTYRAG	2 cut(s)	104, 261
Sse9I	AATT	1 cut(s)	23
SspMI	CTAG	1 cut(s)	195
TaiI	ACGT	3 cut(s)	168, 250, 292
TasI	AATT	1 cut(s)	23
TatI	WGTACW	2 cut(s)	36, 142
Tru1I	TTAA	2 cut(s)	60, 78
Tru9I	TTAA	2 cut(s)	60, 78
TseI	GCWGC	2 cut(s)	86, 221
TspDTI	ATGAA	3 cut(s)	4, 129, 171
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.