Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006455.1

Orthogroup ID

OG0009067

Physical Location & Seq

Genomic Coordinates Reverse (-)

24215 .. 25064

Gene Structure 850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006455.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ctgataaagcttaagcgatatgaagaagccattggacaatgcactgttgtactggcagaagatgaaaacaatgtcaaagccctatttaggcgagcaaaagccagagcagagcttgggcagacagatgctgcccgtgaagattttctaaaggcacgtaagtttgctcctcaagacaaagctattgcaagagagttacgcctgcttgctgaacatgacaaggctgtttatcagaaacagaaggagatctacaagggaattttcggaccaacaccagatcctaaacccaagcgaactaattggttgatcattgcttggcaatggctgttgtcattgttctacagtatcttcaggcgtgagaagcgaaaagctgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

124

Amino Acids

14.57

Weight (kDa)

9.87

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260
prunus_persica	Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1
pyrus_communis	pycom02g25960
rosa_chinensis	RchiOBHm_Chr1g0317011
rosa_laevigata	RLG00000030633
rosa_multiflora	Rmu_co8449809.1_g000001 Rmu_sc0006455.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330740
rosa_rugosa	Rorug01G0013800
rosa_samantha	Rh1AG024900 Rh1BG021700 Rh1CG023300 Rh1DG022100 Rh5BG177800
rosa_wichuraiana	Rw1G001720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflII	CTTAAG	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AluBI	AGCT	4 cut(s)	10, 112, 179, 368
AluI	AGCT	4 cut(s)	10, 112, 179, 368
AlwI	GGATC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BarI	GAAGNNNNNNTAC	2 cut(s)	230, 262
BbvI	GCAGC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	337
BfrI	CTTAAG	1 cut(s)	11
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmsI	GCATC	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	57
Bse3DI	GCAATG	2 cut(s)	306, 323
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	2 cut(s)	306, 323
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	87
Bsp143I	GATC	3 cut(s)	243, 274, 303
BspCNI	CTCAG	1 cut(s)	361
BspPI	GGATC	1 cut(s)	269
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	306, 323
BsrI	ACTGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	243, 274, 303
Bst4CI	ACNGT	2 cut(s)	46, 341
BstAFI	CTTAAG	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	93, 200, 204
BstDEI	CTNAG	1 cut(s)	369
BstKTI	GATC	3 cut(s)	246, 277, 306
BstMBI	GATC	3 cut(s)	243, 274, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	2 cut(s)	243, 274
BstYI	RGATCY	2 cut(s)	243, 274
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	3 cut(s)	93, 200, 204
CaiI	CAGNNNCTG	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	9 cut(s)	10, 29, 80, 101, 112, 179, 221, 322, 368
CviKI_1	RGCY	9 cut(s)	10, 29, 80, 101, 112, 179, 221, 322, 368
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	3 cut(s)	245, 276, 305
DpnII	GATC	3 cut(s)	243, 274, 303
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	331
FaeI	CATG	1 cut(s)	215
FaiI	YATR	2 cut(s)	21, 213
FatI	CATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	231, 263
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	2 cut(s)	46, 341
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	42, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	3 cut(s)	243, 274, 303
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	5 cut(s)	38, 115, 212, 285, 334
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	3 cut(s)	245, 276, 305
MboI	GATC	3 cut(s)	243, 274, 303
MboII	GAAGA	4 cut(s)	35, 71, 149, 337
MflI	RGATCY	2 cut(s)	243, 274
MluCI	AATT	2 cut(s)	255, 295
MnlI	CCTC	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	3 cut(s)	243, 274, 303
NlaIII	CATG	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	130
Ppu21I	YACGTR	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	243, 274
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	3 cut(s)	243, 274, 303
Sau96I	GGNCC	1 cut(s)	263
SetI	ASST	5 cut(s)	12, 114, 157, 181, 370
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	263
SmlI	CTYRAG	2 cut(s)	11, 168
SmoI	CTYRAG	2 cut(s)	11, 168
Sse9I	AATT	2 cut(s)	255, 295
TaaI	ACNGT	2 cut(s)	46, 341
TaiI	ACGT	1 cut(s)	157
TasI	AATT	2 cut(s)	255, 295
TatI	WGTACW	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	36, 78
TspRI	CASTG	1 cut(s)	49
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.