Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009067

Physical Location & Seq

Genomic Coordinates Reverse (-)

2414442 .. 2415767

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0013800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGACGGAAATCACCAACCTGAGCTCCGATGTGACGGAGCTGATCCTCTCCTACCTCCCCATCCCGACCCTCGTCCGAGCCTCCACCGTCTGCAAGCTCTGGCAATCCATCATCTCCTCCACCACCTTCTCCGCCACGCAAACCCAAACCCAAACCCAATCCCACCCCTGGTTCTTCCTCTACGGCATCCACAACACCTCCTCCAAGAACAACCAGTCCTTCACCTTCGACCCTCTCTCCAACCGCTGGCTCCGCCTCCCAACCCCCACCTTCCCTCCCCACCACTACTCCCTCTCCTGCTTCCTCGGCGCCGACGGTTTCTTCCTCATCACCGCCCCTAACTTCACCTACTCCAGAATCCTCAAGCGCTCTTGGCGCTCCACCTCGCCTCTCCACTTCTCCCGCATCAACCCTCTTCTAGGCGTTTTCGACTCCGGCTCTCTCCTCCCCAACTTCATCGTCATCGGTGGTGTCAGATTCATCGGCAACTTGGTCGACATCGAGGACCGCTTGGCCGTCGAGATCTACAGCCCCGACTCCGATTCCTGGCAGCTCCGTCCTCCTCTCCCTGCTGATTTCAGATCCGGCAATTCCTCCCAGTCCTTGTCATCCGCCCTCTTCAAAGGGAGGTTCTCCGGTGGTTGCAGAGGAAGAGAAGAAGAAGAAGAAGAAGAGAGAGAAGCGAATTCAGCTGCCAATTTGGTGGCCTTGCTAGTTGTGCGGAAGAAGTGCCCGGAGGATTGGATTGATCGTCCACCTTCTTCCCTTGTTTTTGTTCTTTCTCGTGATGGTTTACCATGCCCCCGCCTTCTAGCTCGGAATTTGAGTGTCCTTGACTCAGTCGAGGTCTTGGTTACCTTATTTCTCATCGGCAGCTCCATTTTTGGGTTTGGGGAGCTTTGGTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

303

Amino Acids

33.98

Weight (kDa)

6.22

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 41	1.8e-08	F-box domain
F-box-like	PF12937	10 - 41	4.4e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260
prunus_persica	Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1
pyrus_communis	pycom02g25960
rosa_chinensis	RchiOBHm_Chr1g0317011
rosa_laevigata	RLG00000030633
rosa_multiflora	Rmu_co8449809.1_g000001 Rmu_sc0006455.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330740
rosa_rugosa	Rorug01G0013800
rosa_samantha	Rh1AG024900 Rh1BG021700 Rh1CG023300 Rh1DG022100 Rh5BG177800
rosa_wichuraiana	Rw1G001720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	9 cut(s)	132, 244, 253, 333, 403, 508, 612, 721, 805
AclWI	GGATC	2 cut(s)	37, 576
AcoI	YGGCCR	1 cut(s)	513
AcsI	RAATTY	2 cut(s)	685, 820
AcyI	GRCGYC	1 cut(s)	309
AfeI	AGCGCT	1 cut(s)	368
AfiI	CCNNNNNNNGG	5 cut(s)	168, 246, 419, 546, 885
AgsI	TTSAA	1 cut(s)	622
AjnI	CCWGG	2 cut(s)	167, 545
AloI	GAACNNNNNNTCC	3 cut(s)	200, 232, 887
AluBI	AGCT	8 cut(s)	24, 40, 97, 553, 692, 815, 876, 898
AluI	AGCT	8 cut(s)	24, 40, 97, 553, 692, 815, 876, 898
Alw21I	GWGCWC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	37, 576
Aor51HI	AGCGCT	1 cut(s)	368
AoxI	GGCC	2 cut(s)	513, 705
ApeKI	GCWGC	3 cut(s)	550, 692, 873
ApoI	RAATTY	2 cut(s)	685, 820
AspLEI	GCGC	3 cut(s)	311, 369, 378
AspS9I	GGNCC	1 cut(s)	505
AsuC2I	CCSGG	1 cut(s)	734
AsuHPI	GGTGA	4 cut(s)	4, 214, 322, 337
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	734
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	562, 679, 885
BccI	CCATC	3 cut(s)	68, 116, 782
BceAI	ACGGC	2 cut(s)	199, 500
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BciT130I	CCWGG	2 cut(s)	169, 547
BcnI	CCSGG	1 cut(s)	734
BfaI	CTAG	3 cut(s)	419, 713, 812
BfmI	CTRYAG	1 cut(s)	526
BfoI	RGCGCY	3 cut(s)	312, 370, 379
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	3 cut(s)	551, 693, 874
BlsI	GCNGC	3 cut(s)	552, 694, 875
Bme1390I	CCNGG	3 cut(s)	169, 547, 734
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	2 cut(s)	251, 310
BmrFI	CCNGG	3 cut(s)	169, 547, 734
BmrI	ACTGGG	1 cut(s)	592
BmsI	GCATC	2 cut(s)	195, 414
BmuI	ACTGGG	1 cut(s)	592
BoxI	GACNNNNGTC	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	734
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	167, 304
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	5 cut(s)	168, 246, 419, 546, 885
Bse1I	ACTGG	2 cut(s)	214, 598
BseBI	CCWGG	2 cut(s)	169, 547
BseDI	CCNNGG	2 cut(s)	167, 304
BseGI	GGATG	3 cut(s)	60, 186, 608
BseLI	CCNNNNNNNGG	5 cut(s)	168, 246, 419, 546, 885
BseMII	CTCAG	2 cut(s)	11, 852
BseNI	ACTGG	2 cut(s)	214, 598
BseRI	GAGGAG	4 cut(s)	106, 190, 434, 552
BseSI	GKGCMC	1 cut(s)	734
BseXI	GCAGC	3 cut(s)	562, 679, 885
BshFI	GGCC	2 cut(s)	515, 707
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	4 cut(s)	435, 585, 636, 734
BslI	CCNNNNNNNGG	5 cut(s)	168, 246, 419, 546, 885
BsnI	GGCC	2 cut(s)	515, 707
Bsp1286I	GDGCHC	2 cut(s)	26, 734
Bsp143I	GATC	4 cut(s)	42, 522, 581, 748
BspACI	CCGC	9 cut(s)	132, 244, 253, 333, 403, 508, 612, 721, 805
BspANI	GGCC	2 cut(s)	515, 707
BspCNI	CTCAG	2 cut(s)	12, 851
BspLI	GGNNCC	2 cut(s)	251, 310
BspPI	GGATC	2 cut(s)	37, 576
BspT107I	GGYRCC	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	214, 598
BssECI	CCNNGG	2 cut(s)	167, 304
BssMI	GATC	4 cut(s)	42, 522, 581, 748
BssNI	GRCGYC	1 cut(s)	309
BssSI	CACGAG	1 cut(s)	783
Bst2BI	CACGAG	1 cut(s)	783
Bst2UI	CCWGG	2 cut(s)	169, 547
Bst4CI	ACNGT	2 cut(s)	88, 317
Bst6I	CTCTTC	4 cut(s)	420, 623, 646, 666
BstACI	GRCGYC	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	95, 248
BstDEI	CTNAG	2 cut(s)	20, 838
BstEII	GGTNACC	1 cut(s)	853
BstENI	CCTNNNNNAGG	1 cut(s)	417
BstF5I	GGATG	3 cut(s)	60, 186, 608
BstH2I	RGCGCY	3 cut(s)	312, 370, 379
BstHHI	GCGC	3 cut(s)	311, 369, 378
BstKTI	GATC	4 cut(s)	45, 525, 584, 751
BstMBI	GATC	4 cut(s)	42, 522, 581, 748
BstMWI	GCNNNNNNNGC	6 cut(s)	252, 306, 373, 375, 689, 718
BstNI	CCWGG	2 cut(s)	169, 547
BstPAI	GACNNNNGTC	1 cut(s)	71
BstPI	GGTNACC	1 cut(s)	853
BstSCI	CCNGG	3 cut(s)	167, 545, 732
BstSFI	CTRYAG	1 cut(s)	526
BstSLI	GKGCMC	1 cut(s)	734
BstV1I	GCAGC	3 cut(s)	562, 679, 885
BstX2I	RGATCY	2 cut(s)	522, 581
BstXI	CCANNNNNNTGG	1 cut(s)	703
BstYI	RGATCY	2 cut(s)	522, 581
BsuRI	GGCC	2 cut(s)	515, 707
BtsCI	GGATG	3 cut(s)	60, 186, 608
Cac8I	GCNNGC	2 cut(s)	95, 248
CfoI	GCGC	3 cut(s)	311, 369, 378
Cfr13I	GGNCC	1 cut(s)	505
CviAII	CATG	1 cut(s)	798
DdeI	CTNAG	2 cut(s)	20, 838
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	4 cut(s)	44, 524, 583, 750
DpnII	GATC	4 cut(s)	42, 522, 581, 748
EaeI	YGGCCR	1 cut(s)	513
Eam1104I	CTCTTC	4 cut(s)	420, 623, 646, 666
EarI	CTCTTC	4 cut(s)	420, 623, 646, 666
EciI	GGCGGA	3 cut(s)	121, 242, 601
Ecl136II	GAGCTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	505
Eco47III	AGCGCT	1 cut(s)	368
Eco53kI	GAGCTC	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	853
EcoICRI	GAGCTC	1 cut(s)	24
EcoNI	CCTNNNNNAGG	1 cut(s)	417
EcoO65I	GGTNACC	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	167, 545
EcoT38I	GRGCYC	1 cut(s)	26
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
FaeI	CATG	1 cut(s)	801
FaiI	YATR	1 cut(s)	799
FatI	CATG	1 cut(s)	797
FauI	CCCGC	2 cut(s)	410, 812
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	551, 693, 874
FokI	GGATG	3 cut(s)	47, 173, 595
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	3 cut(s)	551, 693, 874
FspBI	CTAG	3 cut(s)	419, 713, 812
GlaI	GCGC	3 cut(s)	310, 368, 377
GluI	GCNGC	3 cut(s)	551, 693, 874
GsuI	CTGGAG	1 cut(s)	337
HaeII	RGCGCY	3 cut(s)	312, 370, 379
HaeIII	GGCC	2 cut(s)	515, 707
HapII	CCGG	4 cut(s)	435, 585, 636, 734
HhaI	GCGC	3 cut(s)	311, 369, 378
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	801
Hin6I	GCGC	3 cut(s)	309, 367, 376
HinP1I	GCGC	3 cut(s)	309, 367, 376
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	6 cut(s)	357, 431, 477, 536, 542, 836
HpaII	CCGG	4 cut(s)	435, 585, 636, 734
HphI	GGTGA	4 cut(s)	4, 214, 322, 337
Hpy166II	GTNNAC	3 cut(s)	496, 755, 794
Hpy188I	TCNGA	6 cut(s)	28, 77, 476, 541, 581, 819
Hpy188III	TCNNGA	4 cut(s)	64, 354, 520, 785
Hpy8I	GTNNAC	3 cut(s)	496, 755, 794
Hpy99I	CGWCG	2 cut(s)	317, 521
HpyAV	CCTTC	6 cut(s)	136, 229, 235, 280, 768, 818
HpyCH4III	ACNGT	2 cut(s)	88, 317
HpyCH4V	TGCA	2 cut(s)	93, 645
HpyF10VI	GCNNNNNNNGC	6 cut(s)	252, 306, 373, 375, 689, 718
HpyF3I	CTNAG	2 cut(s)	20, 838
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	801
HspAI	GCGC	3 cut(s)	309, 367, 376
KasI	GGCGCC	1 cut(s)	308
Kzo9I	GATC	4 cut(s)	42, 522, 581, 748
LmnI	GCTCC	7 cut(s)	29, 37, 255, 383, 558, 881, 895
Lsp1109I	GCAGC	3 cut(s)	562, 679, 885
LweI	GCATC	2 cut(s)	195, 414
MaeI	CTAG	3 cut(s)	419, 713, 812
MaeIII	GTNAC	2 cut(s)	31, 853
MalI	GATC	4 cut(s)	44, 524, 583, 750
MboI	GATC	4 cut(s)	42, 522, 581, 748
MflI	RGATCY	2 cut(s)	522, 581
MhlI	GDGCHC	2 cut(s)	26, 734
MluCI	AATT	4 cut(s)	589, 685, 697, 820
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	3 cut(s)	425, 530, 830
MmeI	TCCRAC	1 cut(s)	264
MspA1I	CMGCKG	2 cut(s)	246, 692
MspI	CCGG	4 cut(s)	435, 585, 636, 734
MspR9I	CCNGG	3 cut(s)	169, 547, 734
MvaI	CCWGG	2 cut(s)	169, 547
MwoI	GCNNNNNNNGC	6 cut(s)	252, 306, 373, 375, 689, 718
NarI	GGCGCC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	734
NdeII	GATC	4 cut(s)	42, 522, 581, 748
NlaIII	CATG	1 cut(s)	801
NlaIV	GGNNCC	2 cut(s)	251, 310
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	31
PfeI	GAWTC	3 cut(s)	357, 477, 542
PflFI	GACNNNGTC	1 cut(s)	839
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	552, 694, 875
PleI	GAGTC	3 cut(s)	425, 530, 830
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	3 cut(s)	425, 530, 830
PshAI	GACNNNNGTC	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	167, 545
PspEI	GGTNACC	1 cut(s)	853
PspGI	CCWGG	2 cut(s)	167, 545
PspN4I	GGNNCC	2 cut(s)	251, 310
PspPI	GGNCC	1 cut(s)	505
PsuI	RGATCY	2 cut(s)	522, 581
PsyI	GACNNNGTC	1 cut(s)	839
PvuII	CAGCTG	1 cut(s)	692
SacI	GAGCTC	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	494
SatI	GCNGC	3 cut(s)	551, 693, 874
Sau3AI	GATC	4 cut(s)	42, 522, 581, 748
Sau96I	GGNCC	1 cut(s)	505
SchI	GAGTC	3 cut(s)	425, 530, 830
ScrFI	CCNGG	3 cut(s)	169, 547, 734
SduI	GDGCHC	2 cut(s)	26, 734
SfaNI	GCATC	2 cut(s)	195, 414
SfcI	CTRYAG	1 cut(s)	526
SfoI	GGCGCC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	505
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	589, 685, 697, 820
SsiI	CCGC	9 cut(s)	132, 244, 253, 333, 403, 508, 612, 721, 805
SspDI	GGCGCC	1 cut(s)	308
SspMI	CTAG	3 cut(s)	419, 713, 812
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	3 cut(s)	167, 545, 732
TaaI	ACNGT	2 cut(s)	88, 317
TaqI	TCGA	6 cut(s)	228, 429, 495, 501, 519, 843
TasI	AATT	4 cut(s)	589, 685, 697, 820
TfiI	GAWTC	3 cut(s)	357, 477, 542
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	3 cut(s)	550, 692, 873
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	445, 469
TspGWI	ACGGA	3 cut(s)	20, 50, 545
Tth111I	GACNNNGTC	1 cut(s)	839
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	505
XagI	CCTNNNNNAGG	1 cut(s)	417
XapI	RAATTY	2 cut(s)	685, 820
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	3 cut(s)	419, 713, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.