Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009067

Physical Location & Seq

Genomic Coordinates Reverse (-)

64441617 .. 64445546

Gene Structure 3930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00330740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGGATGTCCAGGAGCAGCAAAGTCAATCACTTGGTCAAGATGGTGAAAACGAAATAGTCATTGAAAATGCTGCATCTGTTCATGGGGAACCTCCTCAGGATGCTAATGGCCCCCCAAAAGTTGATTCCAAGGAAGAAATTCTTCATGACAAAGTCAAGAAGCAAATCATTAAGGAAGGCCATGGTCCGATACCATCCAAATATTCAACATGCTTCTTGCATTGCAGGGCATGGACTGAAAGCACACAGCATAAGTTTGAAGACACGTGGGACGAACAACGACCACTTGAAATGATTTTAGGAAAAGAGAAAAAAGAAATGACTGGCTTGGCTATTGGCGTATCCAGCATGAAGGCTGGAGAACGTGCCCTATTACATGTAGGCTGGGAGTTGGGATACGGAAAAGAAGGAAACTTTTCTTTCCCAAACGTTCCGCCCTCAGCAGATATATTGTATGAAGTTGAGCTTATTGGATTTGATGAGACCAAAGAAGGGAAAGCTCGCGGTGATATGACCGTGGAGGAGAGGATTGGAGCAGCAGATAGAAGAAAGATGGATGGAAATGCTTTATTTAAGGAGGAAAAACTGGAGGAGGCTATGCAACAGTATGAAATGGCAATAGCATATATGGGTGATGACTTCATGTTCCAATTGTTTGGGAAGTACAGGGACATGGCTTTGGCTGTTAAAAATCCATGCCACCTTAACATGGCAGCCTCCCTGATAAAGCTTAAGCGATATGAAGAAGCCATTGGACAATGCACTGTTGTACTGGCAGAAGATGAAAACAATGTCAAAGCCCTATTTAGGCGAGCAAAAGCCAGAGCAGAGCTTGGGCAGACAGATGCTGCCCGTGAAGATTTTCTAAAGGCACGTAAGTTTGCTCCTCAAGACAAAGCTATTGCAAGAGAGTTACGTCTGCTTGCTGAACATGACAAGGCTGTTTATCAGAAACAGAAGGAGATCTACAAGGGAATTTTCGGACCAACACCAGATCCTAAACCCAAGCGAACTAATTGGTTGATCATTGCTTGGCAATGGCTGTTGTCATTGTTCTACAGTATCATCAGGCGTGAGAAGCGAAAAGCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

365

Amino Acids

41.58

Weight (kDa)

6.01

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	66 - 158	2.2e-15	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260
prunus_persica	Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1
pyrus_communis	pycom02g25960
rosa_chinensis	RchiOBHm_Chr1g0317011
rosa_laevigata	RLG00000030633
rosa_multiflora	Rmu_co8449809.1_g000001 Rmu_sc0006455.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330740
rosa_rugosa	Rorug01G0013800
rosa_samantha	Rh1AG024900 Rh1BG021700 Rh1CG023300 Rh1DG022100 Rh5BG177800
rosa_wichuraiana	Rw1G001720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	507
AciI	CCGC	2 cut(s)	437, 507
AclI	AACGTT	1 cut(s)	432
AclWI	GGATC	1 cut(s)	992
AcsI	RAATTY	2 cut(s)	141, 978
AcvI	CACGTG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	668, 774
AfiI	CCNNNNNNNGG	3 cut(s)	495, 712, 810
AflII	CTTAAG	1 cut(s)	734
AflIII	ACRYGT	2 cut(s)	267, 379
AgsI	TTSAA	4 cut(s)	68, 210, 263, 293
AjnI	CCWGG	1 cut(s)	12
AjuI	GAANNNNNNNTTGG	4 cut(s)	112, 144, 738, 770
AluBI	AGCT	6 cut(s)	469, 503, 733, 835, 902, 1091
AluI	AGCT	6 cut(s)	469, 503, 733, 835, 902, 1091
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	992
AlwNI	CAGNNNCTG	1 cut(s)	851
AoxI	GGCC	2 cut(s)	112, 181
ApeKI	GCWGC	5 cut(s)	19, 74, 539, 716, 851
ApoI	RAATTY	2 cut(s)	141, 978
Asp700I	GAANNNNTTC	4 cut(s)	141, 144, 418, 864
AspS9I	GGNCC	3 cut(s)	113, 188, 986
AsuHPI	GGTGA	3 cut(s)	59, 521, 647
AvaII	GGWCC	2 cut(s)	188, 986
AxyI	CCTNAGG	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	373
BarI	GAAGNNNNNNTAC	2 cut(s)	953, 985
BbrPI	CACGTG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	442
BbvI	GCAGC	5 cut(s)	31, 61, 551, 728, 838
BccI	CCATC	4 cut(s)	38, 205, 550, 554
BciT130I	CCWGG	1 cut(s)	14
BciVI	GTATCC	2 cut(s)	355, 392
BclI	TGATCA	1 cut(s)	1026
BcoDI	GTCTC	1 cut(s)	479
BfmI	CTRYAG	1 cut(s)	1060
BfrI	CTTAAG	1 cut(s)	734
BfuI	GTATCC	2 cut(s)	355, 392
BglII	AGATCT	1 cut(s)	966
BisI	GCNGC	5 cut(s)	20, 75, 540, 717, 852
BlsI	GCNGC	5 cut(s)	21, 76, 541, 718, 853
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	2 cut(s)	188, 986
BmgT120I	GGNCC	3 cut(s)	113, 188, 986
BmiI	GGNNCC	2 cut(s)	93, 115
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	3 cut(s)	86, 94, 838
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	2 cut(s)	381, 611
Bpu10I	CCTNAGC	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	876
BsaAI	YACGTR	2 cut(s)	270, 878
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	132, 184, 519
Bsc4I	CCNNNNNNNGG	3 cut(s)	495, 712, 810
Bse1I	ACTGG	3 cut(s)	331, 594, 780
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	3 cut(s)	223, 1029, 1046
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	3 cut(s)	132, 184, 519
BseGI	GGATG	4 cut(s)	13, 109, 197, 565
BseLI	CCNNNNNNNGG	3 cut(s)	495, 712, 810
BseMI	GCAATG	3 cut(s)	223, 1029, 1046
BseMII	CTCAG	2 cut(s)	113, 456
BseNI	ACTGG	3 cut(s)	331, 594, 780
BseRI	GAGGAG	4 cut(s)	87, 539, 608, 879
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	5 cut(s)	31, 61, 551, 728, 838
BseYI	CCCAGC	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	114, 183
BslFI	GGGAC	2 cut(s)	287, 686
BslI	CCNNNNNNNGG	3 cut(s)	495, 712, 810
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	2 cut(s)	287, 686
BsnI	GGCC	2 cut(s)	114, 183
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	966, 997, 1026
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	2 cut(s)	437, 507
BspANI	GGCC	2 cut(s)	114, 183
BspCNI	CTCAG	2 cut(s)	112, 455
BspFNI	CGCG	1 cut(s)	507
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	93, 115
BspPI	GGATC	1 cut(s)	992
BspTI	CTTAAG	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	479
BsrDI	GCAATG	3 cut(s)	223, 1029, 1046
BsrI	ACTGG	3 cut(s)	331, 594, 780
BssECI	CCNNGG	3 cut(s)	132, 184, 519
BssMI	GATC	3 cut(s)	966, 997, 1026
BssT1I	CCWWGG	2 cut(s)	132, 184
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	4 cut(s)	520, 609, 769, 1064
BstAFI	CTTAAG	1 cut(s)	734
BstBAI	YACGTR	2 cut(s)	270, 878
BstC8I	GCNNGC	3 cut(s)	505, 816, 927
BstDEI	CTNAG	2 cut(s)	99, 442
BstDSI	CCRYGG	2 cut(s)	184, 519
BstF5I	GGATG	4 cut(s)	13, 109, 197, 565
BstFNI	CGCG	1 cut(s)	507
BstKTI	GATC	3 cut(s)	969, 1000, 1029
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	3 cut(s)	966, 997, 1026
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 1081
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	2 cut(s)	216, 383
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	1060
BstSLI	GKGCMC	1 cut(s)	373
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	5 cut(s)	31, 61, 551, 728, 838
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	2 cut(s)	966, 997
BstXI	CCANNNNNNTGG	1 cut(s)	659
BstYI	RGATCY	2 cut(s)	966, 997
Bsu36I	CCTNAGG	1 cut(s)	99
BsuI	GTATCC	2 cut(s)	355, 392
BsuRI	GGCC	2 cut(s)	114, 183
BtgI	CCRYGG	2 cut(s)	184, 519
BtsCI	GGATG	4 cut(s)	13, 109, 197, 565
BtsIMutI	CAGTG	1 cut(s)	765
Cac8I	GCNNGC	3 cut(s)	505, 816, 927
CaiI	CAGNNNCTG	1 cut(s)	851
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	113, 188, 986
Csp6I	GTAC	2 cut(s)	667, 773
CviQI	GTAC	2 cut(s)	667, 773
DdeI	CTNAG	2 cut(s)	99, 442
DpnI	GATC	3 cut(s)	968, 999, 1028
DpnII	GATC	3 cut(s)	966, 997, 1026
EciI	GGCGGA	1 cut(s)	426
Eco130I	CCWWGG	2 cut(s)	132, 184
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	2 cut(s)	188, 986
Eco72I	CACGTG	1 cut(s)	270
Eco81I	CCTNAGG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	2 cut(s)	132, 184
ErhI	CCWWGG	2 cut(s)	132, 184
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 453, 485
FaqI	GGGAC	2 cut(s)	287, 686
FbaI	TGATCA	1 cut(s)	1026
Fnu4HI	GCNGC	5 cut(s)	20, 75, 540, 717, 852
FokI	GGATG	4 cut(s)	20, 116, 184, 572
Fsp4HI	GCNGC	5 cut(s)	20, 75, 540, 717, 852
GluI	GCNGC	5 cut(s)	20, 75, 540, 717, 852
GsaI	CCCAGC	1 cut(s)	391
GsuI	CTGGAG	2 cut(s)	381, 611
HaeIII	GGCC	2 cut(s)	114, 183
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	1 cut(s)	128
HphI	GGTGA	3 cut(s)	59, 521, 647
Hpy188I	TCNGA	3 cut(s)	192, 954, 986
Hpy188III	TCNNGA	5 cut(s)	41, 101, 149, 160, 893
HpyAV	CCTTC	5 cut(s)	173, 349, 404, 488, 955
HpyCH4III	ACNGT	4 cut(s)	520, 609, 769, 1064
HpyCH4IV	ACGT	5 cut(s)	269, 367, 432, 877, 919
HpyCH4V	TGCA	6 cut(s)	77, 223, 228, 604, 765, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 1081
HpyF3I	CTNAG	2 cut(s)	99, 442
HpySE526I	ACGT	5 cut(s)	269, 367, 432, 877, 919
Ksp22I	TGATCA	1 cut(s)	1026
Kzo9I	GATC	3 cut(s)	966, 997, 1026
LmnI	GCTCC	3 cut(s)	16, 536, 892
Lsp1109I	GCAGC	5 cut(s)	31, 61, 551, 728, 838
LweI	GCATC	3 cut(s)	86, 94, 838
MaeII	ACGT	5 cut(s)	269, 367, 432, 877, 919
MaeIII	GTNAC	1 cut(s)	915
MalI	GATC	3 cut(s)	968, 999, 1028
MboI	GATC	3 cut(s)	966, 997, 1026
MboII	GAAGA	7 cut(s)	137, 149, 275, 561, 758, 794, 872
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	2 cut(s)	966, 997
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	4 cut(s)	141, 653, 978, 1018
MroXI	GAANNNNTTC	4 cut(s)	141, 144, 418, 864
MseI	TTAA	5 cut(s)	174, 576, 690, 708, 735
MspCI	CTTAAG	1 cut(s)	734
MspR9I	CCNGG	1 cut(s)	14
MunI	CAATTG	1 cut(s)	653
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	2 cut(s)	348, 1081
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	3 cut(s)	966, 997, 1026
NlaIV	GGNNCC	2 cut(s)	93, 115
NspI	RCATGY	2 cut(s)	216, 383
PagI	TCATGA	1 cut(s)	148
PciI	ACATGT	1 cut(s)	379
PdmI	GAANNNNTTC	4 cut(s)	141, 144, 418, 864
PfeI	GAWTC	1 cut(s)	128
PflFI	GACNNNGTC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	5 cut(s)	21, 76, 541, 718, 853
PmaCI	CACGTG	1 cut(s)	270
PmlI	CACGTG	1 cut(s)	270
Ppu21I	YACGTR	2 cut(s)	270, 878
PscI	ACATGT	1 cut(s)	379
Psp1406I	AACGTT	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	12
PspCI	CACGTG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	2 cut(s)	93, 115
PspPI	GGNCC	3 cut(s)	113, 188, 986
PstNI	CAGNNNCTG	1 cut(s)	851
PsuI	RGATCY	2 cut(s)	966, 997
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	2 cut(s)	668, 774
RsaNI	GTAC	2 cut(s)	667, 773
SaqAI	TTAA	5 cut(s)	174, 576, 690, 708, 735
SatI	GCNGC	5 cut(s)	20, 75, 540, 717, 852
Sau3AI	GATC	3 cut(s)	966, 997, 1026
Sau96I	GGNCC	3 cut(s)	113, 188, 986
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	3 cut(s)	86, 94, 838
SfcI	CTRYAG	1 cut(s)	1060
SinI	GGWCC	2 cut(s)	188, 986
SmlI	CTYRAG	2 cut(s)	734, 891
SmoI	CTYRAG	2 cut(s)	734, 891
Sse9I	AATT	4 cut(s)	141, 653, 978, 1018
SsiI	CCGC	2 cut(s)	437, 507
SspI	AATATT	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	2 cut(s)	132, 184
TaaI	ACNGT	4 cut(s)	520, 609, 769, 1064
TaiI	ACGT	5 cut(s)	272, 370, 435, 880, 922
TasI	AATT	4 cut(s)	141, 653, 978, 1018
TatI	WGTACW	2 cut(s)	666, 772
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	5 cut(s)	174, 576, 690, 708, 735
Tru9I	TTAA	5 cut(s)	174, 576, 690, 708, 735
TscAI	CASTG	1 cut(s)	772
TseI	GCWGC	5 cut(s)	19, 74, 539, 716, 851
TspDTI	ATGAA	8 cut(s)	74, 137, 368, 474, 627, 634, 759, 801
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	772
Tth111I	GACNNNGTC	1 cut(s)	155
Vha464I	CTTAAG	1 cut(s)	734
VpaK11BI	GGWCC	2 cut(s)	188, 986
XapI	RAATTY	2 cut(s)	141, 978
XceI	RCATGY	2 cut(s)	216, 383
XmnI	GAANNNNTTC	4 cut(s)	141, 144, 418, 864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.