Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009067

Physical Location & Seq

Genomic Coordinates Forward (+)

3420525 .. 3424530

Gene Structure 4006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG022100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAGGATGTCCAGGAGCAGCAAAGTCAATCACTTGGTCAAGATGGTGAAAACGAAATAGTCATTGAAAATGCTGCATCTGTTCATGGGGAACCTCCTCAGGATGCTAATGGCCCCCCAAAAGTTGATTCCAAGGAAGAAATTCTTCATGACAAAGTCAAGAAGCAAATCATTAAGGAAGGCCATGGTCCGATACCATCCAAATATTCGACATGCTTCTTGCATTACAGGGCATGGACTGAAAGCACACAGCATAAGTTTGAAGACACGTGGGATGAACAACGACCACTTGAAATGATTTTAGGAAAAGAGAAAAAAGAAATGACTGGCTTGGCTATTGGCGTATCCAGCATGAAGGCTGGAGAACGTGCCCTATTACATGTAGGCTGGGAGTTGGGATATGGAAAAGAAGGAAACTTTTCTTTCCCAAACGTTCCACCCTCAGCAGATATATTGTATGAAGTTGAGCTTATTGGATTTGATGAGACCAAAGAAGGGAAAGCTCGCGGTGATATGACTGTGGAGGAGAGGATTGGAGCAGCAGATAGAAGAAAGATGGATGGAAATGCTTTATTTAAGGAGGAAAAACTGGAGGAGGCTATGCAACAGTATGAAATGGCAATAGCATATATGGGTGATGACTTCATGTTCCAATTGTTTGGGAAGTACAGGGACATGGCTTTGGCTGTTAAAAATCCATGCCACCTTAACATGGCAGCCTCCCTTATAAAGCTTAAGCGATATGAAGAAGCCATTGGACAATGCACTGTTGTAAGTATATCAAATCACAAGAAAAGTGTGTTTCATTTATTACTGGCAATTGTATTATTCATCCCTAAGATACTAGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

284

Amino Acids

31.95

Weight (kDa)

5.31

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	66 - 158	1.6e-16	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260
prunus_persica	Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1
pyrus_communis	pycom02g25960
rosa_chinensis	RchiOBHm_Chr1g0317011
rosa_laevigata	RLG00000030633
rosa_multiflora	Rmu_co8449809.1_g000001 Rmu_sc0006455.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330740
rosa_rugosa	Rorug01G0013800
rosa_samantha	Rh1AG024900 Rh1BG021700 Rh1CG023300 Rh1DG022100 Rh5BG177800
rosa_wichuraiana	Rw1G001720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	728
AccII	CGCG	1 cut(s)	507
AciI	CCGC	1 cut(s)	507
AclI	AACGTT	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	141
AcvI	CACGTG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	668
AfiI	CCNNNNNNNGG	2 cut(s)	495, 712
AflII	CTTAAG	1 cut(s)	734
AflIII	ACRYGT	2 cut(s)	267, 379
AgsI	TTSAA	3 cut(s)	68, 263, 293
AjnI	CCWGG	1 cut(s)	12
AjuI	GAANNNNNNNTTGG	4 cut(s)	112, 144, 738, 770
AluBI	AGCT	3 cut(s)	469, 503, 733
AluI	AGCT	3 cut(s)	469, 503, 733
Alw26I	GTCTC	1 cut(s)	479
AoxI	GGCC	2 cut(s)	112, 181
ApeKI	GCWGC	4 cut(s)	19, 74, 539, 716
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	3 cut(s)	141, 144, 418
AspS9I	GGNCC	2 cut(s)	113, 188
AsuHPI	GGTGA	3 cut(s)	59, 521, 647
AvaII	GGWCC	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	373
BbrPI	CACGTG	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	442
BbvI	GCAGC	4 cut(s)	31, 61, 551, 728
BccI	CCATC	4 cut(s)	38, 205, 550, 554
BciT130I	CCWGG	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	1 cut(s)	845
BfrI	CTTAAG	1 cut(s)	734
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	4 cut(s)	20, 75, 540, 717
BlsI	GCNGC	4 cut(s)	21, 76, 541, 718
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	113, 188
BmiI	GGNNCC	2 cut(s)	93, 115
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	2 cut(s)	86, 94
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	2 cut(s)	381, 611
Bpu10I	CCTNAGC	1 cut(s)	442
BsaAI	YACGTR	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	132, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	495, 712
Bse1I	ACTGG	3 cut(s)	331, 594, 819
Bse21I	CCTNAGG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	132, 184
BseGI	GGATG	6 cut(s)	13, 109, 197, 280, 565, 831
BseLI	CCNNNNNNNGG	2 cut(s)	495, 712
BseMII	CTCAG	2 cut(s)	113, 456
BseNI	ACTGG	3 cut(s)	331, 594, 819
BseRI	GAGGAG	3 cut(s)	87, 539, 608
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	4 cut(s)	31, 61, 551, 728
BseYI	CCCAGC	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	114, 183
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	2 cut(s)	495, 712
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	2 cut(s)	114, 183
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	2 cut(s)	114, 183
BspCNI	CTCAG	2 cut(s)	112, 455
BspFNI	CGCG	1 cut(s)	507
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	93, 115
BspTI	CTTAAG	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	479
BsrI	ACTGG	3 cut(s)	331, 594, 819
BssECI	CCNNGG	2 cut(s)	132, 184
BssT1I	CCWWGG	2 cut(s)	132, 184
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	3 cut(s)	520, 609, 769
BstAFI	CTTAAG	1 cut(s)	734
BstBAI	YACGTR	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	505
BstDEI	CTNAG	3 cut(s)	99, 442, 837
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	6 cut(s)	13, 109, 197, 280, 565, 831
BstFNI	CGCG	1 cut(s)	507
BstMAI	GTCTC	1 cut(s)	479
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	2 cut(s)	216, 383
BstSCI	CCNGG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	373
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	4 cut(s)	31, 61, 551, 728
BstV2I	GAAGAC	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	659
Bsu36I	CCTNAGG	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	114, 183
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	6 cut(s)	13, 109, 197, 280, 565, 831
BtsIMutI	CAGTG	1 cut(s)	765
Cac8I	GCNNGC	1 cut(s)	505
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	113, 188
Csp6I	GTAC	1 cut(s)	667
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	3 cut(s)	99, 442, 837
Eco130I	CCWWGG	2 cut(s)	132, 184
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	188
Eco72I	CACGTG	1 cut(s)	270
Eco81I	CCTNAGG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	2 cut(s)	132, 184
ErhI	CCWWGG	2 cut(s)	132, 184
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 453, 485
FaqI	GGGAC	1 cut(s)	686
Fnu4HI	GCNGC	4 cut(s)	20, 75, 540, 717
FokI	GGATG	6 cut(s)	20, 116, 184, 287, 572, 818
Fsp4HI	GCNGC	4 cut(s)	20, 75, 540, 717
FspBI	CTAG	1 cut(s)	845
GluI	GCNGC	4 cut(s)	20, 75, 540, 717
GsaI	CCCAGC	1 cut(s)	391
GsuI	CTGGAG	2 cut(s)	381, 611
HaeIII	GGCC	2 cut(s)	114, 183
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	1 cut(s)	128
HphI	GGTGA	3 cut(s)	59, 521, 647
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	4 cut(s)	41, 101, 149, 160
HpyAV	CCTTC	4 cut(s)	173, 349, 404, 488
HpyCH4III	ACNGT	3 cut(s)	520, 609, 769
HpyCH4IV	ACGT	3 cut(s)	269, 367, 432
HpyCH4V	TGCA	4 cut(s)	77, 223, 604, 765
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	3 cut(s)	99, 442, 837
HpySE526I	ACGT	3 cut(s)	269, 367, 432
LmnI	GCTCC	2 cut(s)	16, 536
Lsp1109I	GCAGC	4 cut(s)	31, 61, 551, 728
LweI	GCATC	2 cut(s)	86, 94
MaeI	CTAG	1 cut(s)	845
MaeII	ACGT	3 cut(s)	269, 367, 432
MboII	GAAGA	5 cut(s)	137, 149, 275, 561, 758
MfeI	CAATTG	2 cut(s)	653, 819
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	3 cut(s)	141, 653, 819
MnlI	CCTC	9 cut(s)	105, 108, 451, 517, 522, 574, 586, 589, 730
MroXI	GAANNNNTTC	3 cut(s)	141, 144, 418
MseI	TTAA	5 cut(s)	174, 576, 690, 708, 735
MspCI	CTTAAG	1 cut(s)	734
MspR9I	CCNGG	1 cut(s)	14
MunI	CAATTG	2 cut(s)	653, 819
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	348
NcoI	CCATGG	1 cut(s)	184
NlaIV	GGNNCC	2 cut(s)	93, 115
NspI	RCATGY	2 cut(s)	216, 383
PagI	TCATGA	1 cut(s)	148
PciI	ACATGT	1 cut(s)	379
PdmI	GAANNNNTTC	3 cut(s)	141, 144, 418
PfeI	GAWTC	1 cut(s)	128
PflFI	GACNNNGTC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	4 cut(s)	21, 76, 541, 718
PmaCI	CACGTG	1 cut(s)	270
PmlI	CACGTG	1 cut(s)	270
Ppu21I	YACGTR	1 cut(s)	270
PscI	ACATGT	1 cut(s)	379
PsiI	TTATAA	1 cut(s)	728
Psp1406I	AACGTT	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	12
PspCI	CACGTG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	2 cut(s)	93, 115
PspPI	GGNCC	2 cut(s)	113, 188
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
SaqAI	TTAA	5 cut(s)	174, 576, 690, 708, 735
SatI	GCNGC	4 cut(s)	20, 75, 540, 717
Sau96I	GGNCC	2 cut(s)	113, 188
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	8 cut(s)	97, 272, 370, 435, 471, 505, 708, 735
SfaNI	GCATC	2 cut(s)	86, 94
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	3 cut(s)	141, 653, 819
SsiI	CCGC	1 cut(s)	507
SspI	AATATT	1 cut(s)	206
SspMI	CTAG	1 cut(s)	845
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	2 cut(s)	132, 184
TaaI	ACNGT	3 cut(s)	520, 609, 769
TaiI	ACGT	3 cut(s)	272, 370, 435
TaqI	TCGA	1 cut(s)	209
TasI	AATT	3 cut(s)	141, 653, 819
TatI	WGTACW	1 cut(s)	666
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	5 cut(s)	174, 576, 690, 708, 735
Tru9I	TTAA	5 cut(s)	174, 576, 690, 708, 735
TscAI	CASTG	1 cut(s)	772
TseI	GCWGC	4 cut(s)	19, 74, 539, 716
TspRI	CASTG	1 cut(s)	772
Tth111I	GACNNNGTC	1 cut(s)	155
Vha464I	CTTAAG	1 cut(s)	734
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	2 cut(s)	216, 383
XmnI	GAANNNNTTC	3 cut(s)	141, 144, 418
XspI	CTAG	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.