RLG00000030633

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0009067
Physical Location & Seq
Reverse (-)
64709314 .. 64718581
9268 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030633

Sequence Viewer

Length: 1155 bp
ATGGCCAGGGCTTATTCATTCCATTACCGTGAAGTGAAGAAAAGCACAGATTACATTTTGGGTAGAAGAGGAATCTACAATGCAAGTAGAGAAGGTCAAGATGGTGAAAACGAAATAGTCATTGAAAATGCTGCATCTGTTCATGGGGAACCTCCTCAGGATGCTAATGGCCCCCCAAAAGTTGATTCCAAGGAAGAAATTCTTCATGACAAAGTCAAGAAGCAAATCATTAAGGAGGGCCATGGTCCGATACCATCCAAATATTCAACATGCTTCTTGCATTACAGGGCCTGGACTGAAAGCACACAGCATAAGTTTGAAGACACATGGGACGAACAACGACCACTTGAAATGATTTTAGGAAAAGAGAAAAAAGAAATGACTGGCTTGGCTATTGGTGTATCCAGCATGAAGGCTGGAGAACGTGCCCTATTACATGTAGGCTGGGAGTTGGGATACGGAAAAGAAGGAAACTTTTCTTTCCCAAACGTTCCACCCTCAGCAGATATATTGTATGAAGTTGAGCTTATTGGATTTGATGAGACCAAAGAAGGGAAAGCGCGCGGTGATATGACTGTGGAGGAGAGGATTGGAGCAGCAGATAGAAGAAAGATGGATGGAAATGCTTTATTTAAGGAGGAAAAACTGGAGGAGGCTATGCAACAGTATGAAATGGCAATAGCATATATGGGTGATGACTTCATGTTCCAATTGTTTGGGAAGTACAGGGACATGGCTTTGGCTGTTAAAAATCCATGCCACCTTAACATGGCAGCCTCCCTGATAAAGCTTAAGCGATATGAAGAAGCCATTGGACAATGCACTGTTGTACTGGCAGAAGATGAAAACAATGTCAAAGCCCTATTTAGGCGAGCAAAAGCCAGAGCAGAGCTTGGGCAGACAGATGCTGCCCGCGAAGATTTTCTAAAGGCACGTAAGTTTGCTCCTCAAGACAAAGCTATTGCAAGAGAGTTACGTCTGCTTGCTGAACATGACAAGGCTGTTTATCAGAAACAGAAGGAGATCTACAAGGGAATTTTCGGACCAACACCAGATCCTAAACCCAAGCGAACTAAATGGTTGATCATTATTTGGCAATGGCTGTTGTCATTGTTCTTCAGTATCTTCAGGCGTGAGAACCGAAAAGCTGAGTAG

Protein Analysis

385

Amino Acids

44.05

Weight (kDa)

7.68

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 85 - 177 2.9e-16 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 562, 564, 915
AciI CCGC 2 cut(s) 564, 913
AclI AACGTT 1 cut(s) 489
AclWI GGATC 1 cut(s) 1049
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 198, 1035
AcuI CTGAAG 2 cut(s) 1102, 1111
AfaI GTAC 2 cut(s) 725, 831
AfiI CCNNNNNNNGG 3 cut(s) 552, 769, 867
AflII CTTAAG 1 cut(s) 791
AflIII ACRYGT 1 cut(s) 436
AgsI TTSAA 4 cut(s) 125, 267, 320, 350
AjnI CCWGG 2 cut(s) 5, 290
AjuI GAANNNNNNNTTGG 4 cut(s) 169, 201, 795, 827
AluBI AGCT 5 cut(s) 526, 790, 892, 959, 1148
AluI AGCT 5 cut(s) 526, 790, 892, 959, 1148
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 1 cut(s) 1049
AlwNI CAGNNNCTG 2 cut(s) 291, 908
AoxI GGCC 4 cut(s) 3, 169, 238, 288
ApeKI GCWGC 4 cut(s) 131, 596, 773, 908
ApoI RAATTY 2 cut(s) 198, 1035
Asp700I GAANNNNTTC 4 cut(s) 198, 201, 475, 921
AspLEI GCGC 2 cut(s) 562, 564
AspS9I GGNCC 5 cut(s) 170, 238, 245, 288, 1043
AsuHPI GGTGA 3 cut(s) 116, 578, 704
AvaII GGWCC 2 cut(s) 245, 1043
AxyI CCTNAGG 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 430
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 1010, 1042
BbsI GAAGAC 1 cut(s) 327
BbvCI CCTCAGC 1 cut(s) 499
BbvI GCAGC 4 cut(s) 118, 608, 785, 895
BccI CCATC 4 cut(s) 95, 262, 607, 611
BciT130I CCWGG 2 cut(s) 7, 292
BciVI GTATCC 2 cut(s) 412, 449
BclI TGATCA 1 cut(s) 1083
BcoDI GTCTC 1 cut(s) 536
BfrI CTTAAG 1 cut(s) 791
BfuI GTATCC 2 cut(s) 412, 449
BglII AGATCT 1 cut(s) 1023
BisI GCNGC 4 cut(s) 132, 597, 774, 909
BlsI GCNGC 4 cut(s) 133, 598, 775, 910
Bme1390I CCNGG 2 cut(s) 7, 292
Bme18I GGWCC 2 cut(s) 245, 1043
BmgT120I GGNCC 5 cut(s) 170, 238, 245, 288, 1043
BmiI GGNNCC 2 cut(s) 150, 172
BmrFI CCNGG 2 cut(s) 7, 292
BmsI GCATC 3 cut(s) 143, 151, 895
BpiI GAAGAC 1 cut(s) 327
BpmI CTGGAG 2 cut(s) 438, 668
Bpu10I CCTNAGC 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 933
BsaAI YACGTR 1 cut(s) 935
BsaI GGTCTC 1 cut(s) 536
BsaJI CCNNGG 3 cut(s) 6, 189, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 552, 769, 867
Bse1I ACTGG 3 cut(s) 388, 651, 837
Bse21I CCTNAGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 1103
BseBI CCWGG 2 cut(s) 7, 292
BseDI CCNNGG 3 cut(s) 6, 189, 241
BseGI GGATG 3 cut(s) 166, 254, 622
BseLI CCNNNNNNNGG 3 cut(s) 552, 769, 867
BseMI GCAATG 1 cut(s) 1103
BseMII CTCAG 3 cut(s) 170, 513, 1140
BseNI ACTGG 3 cut(s) 388, 651, 837
BsePI GCGCGC 1 cut(s) 560
BseRI GAGGAG 4 cut(s) 144, 596, 665, 936
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 4 cut(s) 118, 608, 785, 895
BseYI CCCAGC 1 cut(s) 444
Bsh1236I CGCG 3 cut(s) 562, 564, 915
BshFI GGCC 4 cut(s) 5, 171, 240, 290
BslFI GGGAC 2 cut(s) 344, 743
BslI CCNNNNNNNGG 3 cut(s) 552, 769, 867
BsmAI GTCTC 1 cut(s) 536
BsmFI GGGAC 2 cut(s) 344, 743
BsnI GGCC 4 cut(s) 5, 171, 240, 290
Bso31I GGTCTC 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 3 cut(s) 1023, 1054, 1083
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 2 cut(s) 564, 913
BspANI GGCC 4 cut(s) 5, 171, 240, 290
BspCNI CTCAG 3 cut(s) 169, 512, 1141
BspFNI CGCG 3 cut(s) 562, 564, 915
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 150, 172
BspPI GGATC 1 cut(s) 1049
BspTI CTTAAG 1 cut(s) 791
BspTNI GGTCTC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 1103
BsrI ACTGG 3 cut(s) 388, 651, 837
BssECI CCNNGG 3 cut(s) 6, 189, 241
BssHII GCGCGC 1 cut(s) 560
BssMI GATC 3 cut(s) 1023, 1054, 1083
BssT1I CCWWGG 2 cut(s) 189, 241
Bst2UI CCWGG 2 cut(s) 7, 292
Bst4CI ACNGT 4 cut(s) 29, 577, 666, 826
Bst6I CTCTTC 1 cut(s) 61
BstAFI CTTAAG 1 cut(s) 791
BstBAI YACGTR 1 cut(s) 935
BstC8I GCNNGC 4 cut(s) 562, 873, 913, 984
BstDEI CTNAG 3 cut(s) 156, 499, 1149
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 3 cut(s) 166, 254, 622
BstFNI CGCG 3 cut(s) 562, 564, 915
BstHHI GCGC 2 cut(s) 562, 564
BstKTI GATC 3 cut(s) 1026, 1057, 1086
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 3 cut(s) 1023, 1054, 1083
BstNI CCWGG 2 cut(s) 7, 292
BstNSI RCATGY 2 cut(s) 273, 440
BstSCI CCNGG 2 cut(s) 5, 290
BstSLI GKGCMC 1 cut(s) 430
BstUI CGCG 3 cut(s) 562, 564, 915
BstV1I GCAGC 4 cut(s) 118, 608, 785, 895
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 2 cut(s) 1023, 1054
BstXI CCANNNNNNTGG 1 cut(s) 716
BstYI RGATCY 2 cut(s) 1023, 1054
Bsu36I CCTNAGG 1 cut(s) 156
BsuI GTATCC 2 cut(s) 412, 449
BsuRI GGCC 4 cut(s) 5, 171, 240, 290
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 3 cut(s) 166, 254, 622
BtsIMutI CAGTG 1 cut(s) 822
Cac8I GCNNGC 4 cut(s) 562, 873, 913, 984
CaiI CAGNNNCTG 2 cut(s) 291, 908
CciI TCATGA 1 cut(s) 205
CfoI GCGC 2 cut(s) 562, 564
Cfr13I GGNCC 5 cut(s) 170, 238, 245, 288, 1043
Csp6I GTAC 2 cut(s) 724, 830
CviQI GTAC 2 cut(s) 724, 830
DdeI CTNAG 3 cut(s) 156, 499, 1149
DpnI GATC 3 cut(s) 1025, 1056, 1085
DpnII GATC 3 cut(s) 1023, 1054, 1083
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 2 cut(s) 189, 241
Eco31I GGTCTC 1 cut(s) 536
Eco47I GGWCC 2 cut(s) 245, 1043
Eco57I CTGAAG 2 cut(s) 1102, 1111
Eco81I CCTNAGG 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 288
EcoRII CCWGG 2 cut(s) 5, 290
EcoT14I CCWWGG 2 cut(s) 189, 241
ErhI CCWWGG 2 cut(s) 189, 241
FalI AAGNNNNNCTT 4 cut(s) 186, 218, 510, 542
FaqI GGGAC 2 cut(s) 344, 743
FauI CCCGC 1 cut(s) 920
FbaI TGATCA 1 cut(s) 1083
Fnu4HI GCNGC 4 cut(s) 132, 597, 774, 909
FokI GGATG 3 cut(s) 173, 241, 629
Fsp4HI GCNGC 4 cut(s) 132, 597, 774, 909
GlaI GCGC 2 cut(s) 561, 563
GluI GCNGC 4 cut(s) 132, 597, 774, 909
GsaI CCCAGC 1 cut(s) 448
GsuI CTGGAG 2 cut(s) 438, 668
HaeIII GGCC 4 cut(s) 5, 171, 240, 290
HhaI GCGC 2 cut(s) 562, 564
Hin6I GCGC 2 cut(s) 560, 562
HinP1I GCGC 2 cut(s) 560, 562
HindIII AAGCTT 1 cut(s) 788
HinfI GANTC 2 cut(s) 72, 185
HphI GGTGA 3 cut(s) 116, 578, 704
Hpy188I TCNGA 3 cut(s) 249, 1011, 1043
Hpy188III TCNNGA 5 cut(s) 98, 158, 206, 217, 950
HpyAV CCTTC 5 cut(s) 86, 406, 461, 545, 1012
HpyCH4III ACNGT 4 cut(s) 29, 577, 666, 826
HpyCH4IV ACGT 4 cut(s) 424, 489, 934, 976
HpyCH4V TGCA 6 cut(s) 83, 134, 280, 661, 822, 965
HpyF3I CTNAG 3 cut(s) 156, 499, 1149
HpySE526I ACGT 4 cut(s) 424, 489, 934, 976
HspAI GCGC 2 cut(s) 560, 562
Ksp22I TGATCA 1 cut(s) 1083
Kzo9I GATC 3 cut(s) 1023, 1054, 1083
LmnI GCTCC 2 cut(s) 593, 949
Lsp1109I GCAGC 4 cut(s) 118, 608, 785, 895
LweI GCATC 3 cut(s) 143, 151, 895
MaeII ACGT 4 cut(s) 424, 489, 934, 976
MaeIII GTNAC 1 cut(s) 972
MalI GATC 3 cut(s) 1025, 1056, 1085
MboI GATC 3 cut(s) 1023, 1054, 1083
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 2 cut(s) 1023, 1054
MhlI GDGCHC 1 cut(s) 430
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 198, 710, 1035
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 4 cut(s) 198, 201, 475, 921
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 231, 633, 747, 765, 792
MslI CAYNNNNRTG 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 791
MspR9I CCNGG 2 cut(s) 7, 292
MunI CAATTG 1 cut(s) 710
MvaI CCWGG 2 cut(s) 7, 292
MvnI CGCG 3 cut(s) 562, 564, 915
NcoI CCATGG 1 cut(s) 241
NdeII GATC 3 cut(s) 1023, 1054, 1083
NlaIV GGNNCC 2 cut(s) 150, 172
NspI RCATGY 2 cut(s) 273, 440
PagI TCATGA 1 cut(s) 205
PauI GCGCGC 1 cut(s) 560
PciI ACATGT 1 cut(s) 436
PdmI GAANNNNTTC 4 cut(s) 198, 201, 475, 921
PfeI GAWTC 2 cut(s) 72, 185
PflFI GACNNNGTC 1 cut(s) 212
PkrI GCNGC 4 cut(s) 133, 598, 775, 910
Ppu21I YACGTR 1 cut(s) 935
PscI ACATGT 1 cut(s) 436
Psp1406I AACGTT 1 cut(s) 489
Psp6I CCWGG 2 cut(s) 5, 290
PspFI CCCAGC 1 cut(s) 444
PspGI CCWGG 2 cut(s) 5, 290
PspN4I GGNNCC 2 cut(s) 150, 172
PspPI GGNCC 5 cut(s) 170, 238, 245, 288, 1043
PstNI CAGNNNCTG 2 cut(s) 291, 908
PsuI RGATCY 2 cut(s) 1023, 1054
PsyI GACNNNGTC 1 cut(s) 212
PteI GCGCGC 1 cut(s) 560
RsaI GTAC 2 cut(s) 725, 831
RsaNI GTAC 2 cut(s) 724, 830
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 5 cut(s) 231, 633, 747, 765, 792
SatI GCNGC 4 cut(s) 132, 597, 774, 909
Sau3AI GATC 3 cut(s) 1023, 1054, 1083
Sau96I GGNCC 5 cut(s) 170, 238, 245, 288, 1043
ScrFI CCNGG 2 cut(s) 7, 292
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 3 cut(s) 143, 151, 895
SinI GGWCC 2 cut(s) 245, 1043
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 2 cut(s) 791, 948
SmoI CTYRAG 2 cut(s) 791, 948
Sse9I AATT 3 cut(s) 198, 710, 1035
SsiI CCGC 2 cut(s) 564, 913
SspI AATATT 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 5, 290
StyI CCWWGG 2 cut(s) 189, 241
TaaI ACNGT 4 cut(s) 29, 577, 666, 826
TaiI ACGT 4 cut(s) 427, 492, 937, 979
TasI AATT 3 cut(s) 198, 710, 1035
TatI WGTACW 2 cut(s) 723, 829
TfiI GAWTC 2 cut(s) 72, 185
Tru1I TTAA 5 cut(s) 231, 633, 747, 765, 792
Tru9I TTAA 5 cut(s) 231, 633, 747, 765, 792
TscAI CASTG 1 cut(s) 829
TseI GCWGC 4 cut(s) 131, 596, 773, 908
TspDTI ATGAA 9 cut(s) 6, 131, 194, 425, 531, 684, 691, 816, 858
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 1 cut(s) 829
Tth111I GACNNNGTC 1 cut(s) 212
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 2 cut(s) 245, 1043
XapI RAATTY 2 cut(s) 198, 1035
XceI RCATGY 2 cut(s) 273, 440
XmnI GAANNNNTTC 4 cut(s) 198, 201, 475, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.