Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009067

Physical Location & Seq

Genomic Coordinates Reverse (-)

23835326 .. 23836863

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGACTGGCTTGGCTATTGGGGTGTCCAGCATGAAGTCTGGAGAGCGTGCCCTATTACACGTAGGCTGGGAGTTAGGGTATGGGAAAGAAGGGAGCTTTTGTTTTCCGAATGTTCCACCATTGGCTGATATATCATATGAAGTTGAGCTTATTGGATTTGATGTAACTAGAGAAGGGAAAGCTCGTAGTGACATGACCTTGGAGGAAAGGATTGGAGCAGCAGATGGAAGAAAGATGCATGGAAATGCTTTATTTAAAGAGGAAAAACTGGAGGAGGCAATGCAACAGTATGAAATGGCCATAGCATATATGGGTGACGACTTCATGTTCCAGTTGTTTGAGAAGTACCGGGACATGGCTTTGGTTGTTAAAAATCCATGCCACCTTAACATGGCAGCGTGTTTTATAAAGCTCAAGCGCTATGAAGAAGCCATTGGACAGTGCAGCATTGTACTGGCAGAGGATGAAAACAACGTCAAAGCGCTATTTAGGCGAGGAAAAGCCAGAGCAGAGCTTAGGCAGACAAATGCTGCGCAGGAAGACTTTCTAAAGGCGCGCAAATTTGCACCTCAAGAAAAAGCTATTGCAAGAGAGTTACGTTTGCTTGCTGAACACGACAAGGCTGTTTACCAGAAACAAAAAGAACTCTACAAGGGAATTTTCGGACCAACCCCGGAACCTAAACCCAAACCCAAACGGGATAATCGGTTGATCGATCTTTTGGCACTGGCTGTTGTCATTGTTCTATCATCTGATCATCTTTTGGTACTGGCTGTTGTCATTGTTCTATCATCTCTTCAGGCGCGAAAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

272

Amino Acids

30.51

Weight (kDa)

8.22

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260
prunus_persica	Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1
pyrus_communis	pycom02g25960
rosa_chinensis	RchiOBHm_Chr1g0317011
rosa_laevigata	RLG00000030633
rosa_multiflora	Rmu_co8449809.1_g000001 Rmu_sc0006455.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330740
rosa_rugosa	Rorug01G0013800
rosa_samantha	Rh1AG024900 Rh1BG021700 Rh1CG023300 Rh1DG022100 Rh5BG177800
rosa_wichuraiana	Rw1G001720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
Acc16I	TGCGCA	1 cut(s)	534
AccII	CGCG	2 cut(s)	556, 805
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	560, 657
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	3 cut(s)	347, 453, 768
AfeI	AGCGCT	2 cut(s)	419, 483
AfiI	CCNNNNNNNGG	2 cut(s)	355, 391
AflIII	ACRYGT	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	6 cut(s)	96, 148, 182, 412, 514, 581
AluI	AGCT	6 cut(s)	96, 148, 182, 412, 514, 581
Aor51HI	AGCGCT	2 cut(s)	419, 483
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	4 cut(s)	218, 395, 444, 530
ApoI	RAATTY	2 cut(s)	560, 657
Asp700I	GAANNNNTTC	1 cut(s)	543
AspLEI	GCGC	6 cut(s)	420, 484, 535, 556, 558, 805
AspS9I	GGNCC	1 cut(s)	665
AsuC2I	CCSGG	2 cut(s)	350, 674
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	546
BbvI	GCAGC	4 cut(s)	230, 407, 456, 517
BccI	CCATC	1 cut(s)	218
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	2 cut(s)	350, 674
BfaI	CTAG	1 cut(s)	168
BfoI	RGCGCY	2 cut(s)	421, 485
BisI	GCNGC	4 cut(s)	219, 396, 445, 531
BlsI	GCNGC	4 cut(s)	220, 397, 446, 532
Bme1390I	CCNGG	2 cut(s)	350, 674
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmiI	GGNNCC	1 cut(s)	678
BmrFI	CCNGG	2 cut(s)	350, 674
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	2 cut(s)	60, 290
Bpu10I	CCTNAGC	1 cut(s)	515
BpuEI	CTTGAG	2 cut(s)	398, 555
BpuMI	CCSGG	2 cut(s)	350, 674
Bsa29I	ATCGAT	1 cut(s)	714
BsaAI	YACGTR	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	198, 672
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 85, 92, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	355, 391
Bse1I	ACTGG	6 cut(s)	10, 273, 331, 459, 732, 774
Bse3DI	GCAATG	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	2 cut(s)	198, 672
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	2 cut(s)	355, 391
BseMI	GCAATG	1 cut(s)	285
BseNI	ACTGG	6 cut(s)	10, 273, 331, 459, 732, 774
BsePI	GCGCGC	1 cut(s)	554
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	4 cut(s)	230, 407, 456, 517
BseYI	CCCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	463
Bsh1236I	CGCG	2 cut(s)	556, 805
BshFI	GGCC	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	349, 674
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	2 cut(s)	355, 391
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	3 cut(s)	711, 715, 754
BspANI	GGCC	1 cut(s)	299
BspDI	ATCGAT	1 cut(s)	714
BspFNI	CGCG	2 cut(s)	556, 805
BspLI	GGNNCC	1 cut(s)	678
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	6 cut(s)	10, 273, 331, 459, 732, 774
BssECI	CCNNGG	2 cut(s)	198, 672
BssHII	GCGCGC	1 cut(s)	554
BssMI	GATC	3 cut(s)	711, 715, 754
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	288, 441
Bst6I	CTCTTC	1 cut(s)	801
BstBAI	YACGTR	1 cut(s)	61
BstC8I	GCNNGC	3 cut(s)	48, 556, 606
BstDEI	CTNAG	1 cut(s)	515
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	2 cut(s)	556, 805
BstH2I	RGCGCY	2 cut(s)	421, 485
BstHHI	GCGC	6 cut(s)	420, 484, 535, 556, 558, 805
BstKTI	GATC	3 cut(s)	714, 718, 757
BstMBI	GATC	3 cut(s)	711, 715, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstSCI	CCNGG	2 cut(s)	348, 672
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	2 cut(s)	556, 805
BstV1I	GCAGC	4 cut(s)	230, 407, 456, 517
BstV2I	GAAGAC	1 cut(s)	546
Bsu15I	ATCGAT	1 cut(s)	714
BsuRI	GGCC	1 cut(s)	299
BsuTUI	ATCGAT	1 cut(s)	714
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	2 cut(s)	446, 725
Cac8I	GCNNGC	3 cut(s)	48, 556, 606
CfoI	GCGC	6 cut(s)	420, 484, 535, 556, 558, 805
Cfr13I	GGNCC	1 cut(s)	665
ClaI	ATCGAT	1 cut(s)	714
Csp6I	GTAC	3 cut(s)	346, 452, 767
CviAII	CATG	7 cut(s)	31, 193, 239, 325, 355, 378, 391
CviQI	GTAC	3 cut(s)	346, 452, 767
DdeI	CTNAG	1 cut(s)	515
DpnI	GATC	3 cut(s)	713, 717, 756
DpnII	GATC	3 cut(s)	711, 715, 754
DraI	TTTAAA	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
Eco130I	CCWWGG	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	665
Eco47III	AGCGCT	2 cut(s)	419, 483
Eco57I	CTGAAG	1 cut(s)	782
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	7 cut(s)	34, 196, 242, 328, 358, 381, 394
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	7 cut(s)	30, 192, 238, 324, 354, 377, 390
FauNDI	CATATG	1 cut(s)	136
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	4 cut(s)	219, 396, 445, 531
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	4 cut(s)	219, 396, 445, 531
FspBI	CTAG	1 cut(s)	168
FspI	TGCGCA	1 cut(s)	534
GlaI	GCGC	6 cut(s)	419, 483, 534, 555, 557, 804
GluI	GCNGC	4 cut(s)	219, 396, 445, 531
GsaI	CCCAGC	1 cut(s)	70
GsuI	CTGGAG	2 cut(s)	60, 290
HaeII	RGCGCY	2 cut(s)	421, 485
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	349, 674
HhaI	GCGC	6 cut(s)	420, 484, 535, 556, 558, 805
Hin1II	CATG	7 cut(s)	34, 196, 242, 328, 358, 381, 394
Hin6I	GCGC	6 cut(s)	418, 482, 533, 554, 556, 803
HinP1I	GCGC	6 cut(s)	418, 482, 533, 554, 556, 803
HpaII	CCGG	2 cut(s)	349, 674
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	3 cut(s)	108, 665, 754
Hpy188III	TCNNGA	2 cut(s)	39, 572
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	2 cut(s)	83, 167
HpyCH4III	ACNGT	2 cut(s)	288, 441
HpyCH4IV	ACGT	3 cut(s)	60, 474, 598
HpyCH4V	TGCA	5 cut(s)	238, 283, 444, 566, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	1 cut(s)	515
HpySE526I	ACGT	3 cut(s)	60, 474, 598
Hsp92II	CATG	7 cut(s)	34, 196, 242, 328, 358, 381, 394
HspAI	GCGC	6 cut(s)	418, 482, 533, 554, 556, 803
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	711, 715, 754
LmnI	GCTCC	2 cut(s)	93, 215
Lsp1109I	GCAGC	4 cut(s)	230, 407, 456, 517
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	3 cut(s)	60, 474, 598
MaeIII	GTNAC	4 cut(s)	163, 188, 314, 594
MalI	GATC	3 cut(s)	713, 717, 756
MboI	GATC	3 cut(s)	711, 715, 754
MboII	GAAGA	4 cut(s)	240, 437, 551, 788
MhlI	GDGCHC	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	2 cut(s)	560, 657
MluNI	TGGCCA	1 cut(s)	299
MnlI	CCTC	7 cut(s)	196, 253, 265, 268, 454, 488, 579
Mox20I	TGGCCA	1 cut(s)	299
Mph1103I	ATGCAT	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	543
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	3 cut(s)	255, 369, 387
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	2 cut(s)	349, 674
MspR9I	CCNGG	2 cut(s)	350, 674
MvnI	CGCG	2 cut(s)	556, 805
MwoI	GCNNNNNNNGC	1 cut(s)	490
NciI	CCSGG	2 cut(s)	350, 674
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	3 cut(s)	711, 715, 754
NlaIII	CATG	7 cut(s)	34, 196, 242, 328, 358, 381, 394
NlaIV	GGNNCC	1 cut(s)	678
NmuCI	GTSAC	2 cut(s)	188, 314
NsbI	TGCGCA	1 cut(s)	534
NsiI	ATGCAT	1 cut(s)	240
PauI	GCGCGC	1 cut(s)	554
PdmI	GAANNNNTTC	1 cut(s)	543
PkrI	GCNGC	4 cut(s)	220, 397, 446, 532
Ppu21I	YACGTR	1 cut(s)	61
PsiI	TTATAA	1 cut(s)	407
PspFI	CCCAGC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	678
PspPI	GGNCC	1 cut(s)	665
PteI	GCGCGC	1 cut(s)	554
RsaI	GTAC	3 cut(s)	347, 453, 768
RsaNI	GTAC	3 cut(s)	346, 452, 767
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	255, 369, 387
SatI	GCNGC	4 cut(s)	219, 396, 445, 531
Sau3AI	GATC	3 cut(s)	711, 715, 754
Sau96I	GGNCC	1 cut(s)	665
ScrFI	CCNGG	2 cut(s)	350, 674
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	225
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	413, 570
SmoI	CTYRAG	2 cut(s)	413, 570
Sse9I	AATT	2 cut(s)	560, 657
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	348, 672
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	288, 441
TaiI	ACGT	3 cut(s)	63, 477, 601
TaqI	TCGA	1 cut(s)	714
TasI	AATT	2 cut(s)	560, 657
TatI	WGTACW	1 cut(s)	451
Tru1I	TTAA	3 cut(s)	255, 369, 387
Tru9I	TTAA	3 cut(s)	255, 369, 387
TscAI	CASTG	2 cut(s)	446, 732
TseFI	GTSAC	2 cut(s)	188, 314
TseI	GCWGC	4 cut(s)	218, 395, 444, 530
Tsp45I	GTSAC	2 cut(s)	188, 314
TspDTI	ATGAA	6 cut(s)	47, 153, 306, 313, 438, 480
TspRI	CASTG	2 cut(s)	446, 732
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	2 cut(s)	560, 657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.