Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009067

Physical Location & Seq

Genomic Coordinates Forward (+)

1602933 .. 1606957

Gene Structure 4025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G017100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTCTTTAAAAACACTGGGTCAAGATGGTGAAAGTGAAATAGTAACTGAAGATGCTACATTTGTTCATGGGGAACCTCCTCAAGATGCTAATGGCCTCCCAAAAGTTGATTCTAAGGTGGAAGTCCTTCATGAGAAAGTCACGAAGCAAATCATTAAGGAAGGTCATGGTCCAATACCATCCAAATATTCAACATGCTTCTTGCACTACAGGGCATGGACTCAAAGCACACGGCATAAGTTTGAAGACACATGGGATGAACAACGACCACTTGAAATGATTTTAGGAAAAGAGAAAAAAGAAATGACTGGCTTGGCTATTGGTGTCTCCAACATGAAATCTGGAGAGCGTGCCCTTTTACATGTAGGCTGGGAGTTAGGGTATGGGAAAGAAGGAAGCTTTTCTTTTCCGAATGTTCCACCCTTGGCAGATATATCATATGAAGTTGAGCTTATTGGGTTTGATGAAACCAAAGAAGGGAAAGCTCGTGGTGACATGACTGTGGAGGAGAGGATTGGAGCAGCAGATAGAAGAAAGATGGATGGAAATGCTTTATTTAAAGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATTGCATATATGGGTGACGACTTCATGTTCCAGTTGTTTGGGAAGTACAGGGACATGGCTTTGGCTGTTAAAAATCCATGCCACCTTAACATTGCAGCGTCTCTTATAAAGCTCAAGCGGTATGAAGAAGCCATTGGACAATGCAGTATTGTTCTGGCGGAGGATGAAAACAATGTCAAAGCATTATTTAGGCGAGGAAAAGCCAGAGCAGAGCTTGGGCAGACAGATGCTGCCCGGGAAGACTTTTTAAAGGCACGTAAATTTGCACCTGAAGACAAAGCTATTGCAAGGGAGTTGCGTCTGCTTGCTGAGCATGACAAGGCTGTTTATCAGAAACAAAAAGAGATCTACAAGGGACTTTTCGGACCAACCCCGGAACCTAAACCCAAGCGAAATAATTGGTTGATCGTCATTTGGCACTGGCTATTGTCATTATTCTACAGTGTCTTCAGGCGTGAAAGGCATAAAGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

360

Amino Acids

41.04

Weight (kDa)

6.41

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260 FvH4_7g01260
prunus_persica	Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1 Prupe.2G017100_v2.0.a1
pyrus_communis	pycom02g25960
rosa_chinensis	RchiOBHm_Chr1g0317011
rosa_laevigata	RLG00000030633
rosa_multiflora	Rmu_co8449809.1_g000001 Rmu_sc0006455.1_g000005
rosa_roxburghii	Rroxscaffold_4G00330740
rosa_rugosa	Rorug01G0013800
rosa_samantha	Rh1AG024900 Rh1BG021700 Rh1CG023300 Rh1DG022100 Rh5BG177800
rosa_wichuraiana	Rw1G001720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AciI	CCGC	2 cut(s)	721, 761
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	863
AcuI	CTGAAG	3 cut(s)	69, 894, 1036
AfaI	GTAC	1 cut(s)	650
AfiI	CCNNNNNNNGG	1 cut(s)	477
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	192, 245, 275
AjuI	GAANNNNNNNTTGG	4 cut(s)	94, 126, 720, 752
AluBI	AGCT	7 cut(s)	399, 451, 485, 715, 817, 884, 1073
AluI	AGCT	7 cut(s)	399, 451, 485, 715, 817, 884, 1073
Alw26I	GTCTC	2 cut(s)	331, 708
AlwNI	CAGNNNCTG	1 cut(s)	833
Ama87I	CYCGRG	1 cut(s)	837
AoxI	GGCC	2 cut(s)	94, 600
ApeKI	GCWGC	3 cut(s)	521, 698, 833
ApoI	RAATTY	1 cut(s)	863
Asp700I	GAANNNNTTC	2 cut(s)	126, 400
AspS9I	GGNCC	2 cut(s)	170, 968
AsuC2I	CCSGG	3 cut(s)	838, 839, 977
AsuHPI	GGTGA	3 cut(s)	41, 503, 629
AvaI	CYCGRG	1 cut(s)	837
AvaII	GGWCC	2 cut(s)	170, 968
BaeGI	GKGCMC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	602
BauI	CACGAG	1 cut(s)	486
BbsI	GAAGAC	4 cut(s)	252, 849, 882, 1042
BbvI	GCAGC	3 cut(s)	533, 710, 820
BccI	CCATC	4 cut(s)	20, 187, 532, 536
BceAI	ACGGC	1 cut(s)	248
BcnI	CCSGG	3 cut(s)	838, 839, 977
BcoDI	GTCTC	2 cut(s)	331, 708
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	2 cut(s)	208, 1042
BglII	AGATCT	1 cut(s)	948
BisI	GCNGC	3 cut(s)	522, 699, 834
BlpI	GCTNAGC	1 cut(s)	912
BlsI	GCNGC	3 cut(s)	523, 700, 835
Bme1390I	CCNGG	3 cut(s)	838, 839, 977
Bme18I	GGWCC	2 cut(s)	170, 968
BmeT110I	CYCGRG	1 cut(s)	837
BmgT120I	GGNCC	2 cut(s)	170, 968
BmiI	GGNNCC	2 cut(s)	75, 981
BmrFI	CCNGG	3 cut(s)	838, 839, 977
BmrI	ACTGGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	43, 76, 820
BmuI	ACTGGG	1 cut(s)	26
BpiI	GAAGAC	4 cut(s)	252, 849, 882, 1042
BpmI	CTGGAG	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	912
BpuEI	CTTGAG	2 cut(s)	66, 701
BpuMI	CCSGG	3 cut(s)	838, 839, 977
BsaAI	YACGTR	1 cut(s)	860
BsaJI	CCNNGG	3 cut(s)	423, 837, 975
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse1I	ACTGG	4 cut(s)	21, 313, 634, 1028
Bse3DI	GCAATG	2 cut(s)	603, 693
BseDI	CCNNGG	3 cut(s)	423, 837, 975
BseGI	GGATG	4 cut(s)	179, 262, 547, 772
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMI	GCAATG	2 cut(s)	603, 693
BseMII	CTCAG	1 cut(s)	903
BseNI	ACTGG	4 cut(s)	21, 313, 634, 1028
BseRI	GAGGAG	3 cut(s)	69, 521, 590
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	3 cut(s)	533, 710, 820
BseYI	CCCAGC	1 cut(s)	369
BshFI	GGCC	2 cut(s)	96, 602
BsiHKCI	CYCGRG	1 cut(s)	837
BsiSI	CCGG	2 cut(s)	838, 977
BslFI	GGGAC	2 cut(s)	668, 972
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	2 cut(s)	331, 708
BsmBI	CGTCTC	1 cut(s)	708
BsmFI	GGGAC	2 cut(s)	668, 972
BsnI	GGCC	2 cut(s)	96, 602
BsoBI	CYCGRG	1 cut(s)	837
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	948, 1008
Bsp1720I	GCTNAGC	1 cut(s)	912
BspACI	CCGC	2 cut(s)	721, 761
BspANI	GGCC	2 cut(s)	96, 602
BspCNI	CTCAG	1 cut(s)	904
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	75, 981
BsrDI	GCAATG	2 cut(s)	603, 693
BsrI	ACTGG	4 cut(s)	21, 313, 634, 1028
BssECI	CCNNGG	3 cut(s)	423, 837, 975
BssMI	GATC	2 cut(s)	948, 1008
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	486
Bst4CI	ACNGT	3 cut(s)	502, 591, 1046
BstBAI	YACGTR	1 cut(s)	860
BstC8I	GCNNGC	2 cut(s)	351, 909
BstDEI	CTNAG	2 cut(s)	114, 912
BstF5I	GGATG	4 cut(s)	179, 262, 547, 772
BstKTI	GATC	2 cut(s)	951, 1011
BstMAI	GTCTC	2 cut(s)	331, 708
BstMBI	GATC	2 cut(s)	948, 1008
BstMWI	GCNNNNNNNGC	2 cut(s)	913, 1063
BstNSI	RCATGY	2 cut(s)	198, 365
BstSCI	CCNGG	3 cut(s)	836, 837, 975
BstSFI	CTRYAG	2 cut(s)	208, 1042
BstSLI	GKGCMC	1 cut(s)	355
BstV1I	GCAGC	3 cut(s)	533, 710, 820
BstV2I	GAAGAC	4 cut(s)	252, 849, 882, 1042
BstX2I	RGATCY	1 cut(s)	948
BstXI	CCANNNNNNTGG	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	948
BsuRI	GGCC	2 cut(s)	96, 602
BtsCI	GGATG	4 cut(s)	179, 262, 547, 772
BtsIMutI	CAGTG	3 cut(s)	14, 1021, 1051
Cac8I	GCNNGC	2 cut(s)	351, 909
CaiI	CAGNNNCTG	1 cut(s)	833
CciI	TCATGA	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	170, 968
Cfr9I	CCCGGG	1 cut(s)	837
CseI	GACGC	2 cut(s)	690, 890
Csp6I	GTAC	1 cut(s)	649
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	2 cut(s)	114, 912
DpnI	GATC	2 cut(s)	950, 1010
DpnII	GATC	2 cut(s)	948, 1008
DraI	TTTAAA	3 cut(s)	9, 559, 852
EaeI	YGGCCR	1 cut(s)	600
EciI	GGCGGA	1 cut(s)	776
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	170, 968
Eco57I	CTGAAG	3 cut(s)	69, 894, 1036
Eco88I	CYCGRG	1 cut(s)	837
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
Esp3I	CGTCTC	1 cut(s)	708
FalI	AAGNNNNNCTT	4 cut(s)	388, 420, 435, 467
FaqI	GGGAC	2 cut(s)	668, 972
FauNDI	CATATG	1 cut(s)	439
Fnu4HI	GCNGC	3 cut(s)	522, 699, 834
FokI	GGATG	4 cut(s)	166, 269, 554, 779
Fsp4HI	GCNGC	3 cut(s)	522, 699, 834
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	3 cut(s)	522, 699, 834
GsaI	CCCAGC	1 cut(s)	373
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	96, 602
HapII	CCGG	2 cut(s)	838, 977
HgaI	GACGC	2 cut(s)	690, 890
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	2 cut(s)	110, 220
HpaII	CCGG	2 cut(s)	838, 977
HphI	GGTGA	3 cut(s)	41, 503, 629
Hpy188I	TCNGA	3 cut(s)	411, 936, 968
Hpy188III	TCNNGA	5 cut(s)	23, 83, 131, 142, 342
HpyAV	CCTTC	4 cut(s)	137, 155, 386, 470
HpyCH4III	ACNGT	3 cut(s)	502, 591, 1046
HpyCH4IV	ACGT	1 cut(s)	859
HpyCH4V	TGCA	7 cut(s)	205, 586, 608, 698, 747, 869, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	913, 1063
HpyF3I	CTNAG	2 cut(s)	114, 912
HpySE526I	ACGT	1 cut(s)	859
Kzo9I	GATC	2 cut(s)	948, 1008
LmnI	GCTCC	1 cut(s)	518
Lsp1109I	GCAGC	3 cut(s)	533, 710, 820
LweI	GCATC	3 cut(s)	43, 76, 820
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	859
MaeIII	GTNAC	4 cut(s)	43, 139, 491, 617
MalI	GATC	2 cut(s)	950, 1010
MboI	GATC	2 cut(s)	948, 1008
MboII	GAAGA	8 cut(s)	62, 257, 543, 575, 740, 854, 887, 1042
MflI	RGATCY	1 cut(s)	948
MhlI	GDGCHC	1 cut(s)	355
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	2 cut(s)	863, 1000
MluNI	TGGCCA	1 cut(s)	602
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	9 cut(s)	87, 90, 107, 499, 504, 568, 571, 757, 791
Mox20I	TGGCCA	1 cut(s)	602
MroXI	GAANNNNTTC	2 cut(s)	126, 400
MscI	TGGCCA	1 cut(s)	602
MseI	TTAA	6 cut(s)	8, 156, 558, 672, 690, 851
MslI	CAYNNNNRTG	1 cut(s)	500
Msp20I	TGGCCA	1 cut(s)	602
MspI	CCGG	2 cut(s)	838, 977
MspR9I	CCNGG	3 cut(s)	838, 839, 977
MwoI	GCNNNNNNNGC	2 cut(s)	913, 1063
NciI	CCSGG	3 cut(s)	838, 839, 977
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	2 cut(s)	948, 1008
NlaIV	GGNNCC	2 cut(s)	75, 981
NmuCI	GTSAC	3 cut(s)	139, 491, 617
NspI	RCATGY	2 cut(s)	198, 365
PagI	TCATGA	1 cut(s)	130
PciI	ACATGT	1 cut(s)	361
PdmI	GAANNNNTTC	2 cut(s)	126, 400
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	523, 700, 835
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	860
PscI	ACATGT	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	710
PspFI	CCCAGC	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	75, 981
PspPI	GGNCC	2 cut(s)	170, 968
PstNI	CAGNNNCTG	1 cut(s)	833
PsuI	RGATCY	1 cut(s)	948
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	1 cut(s)	500
SaqAI	TTAA	6 cut(s)	8, 156, 558, 672, 690, 851
SatI	GCNGC	3 cut(s)	522, 699, 834
Sau3AI	GATC	2 cut(s)	948, 1008
Sau96I	GGNCC	2 cut(s)	170, 968
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	3 cut(s)	838, 839, 977
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	3 cut(s)	43, 76, 820
SfcI	CTRYAG	2 cut(s)	208, 1042
SinI	GGWCC	2 cut(s)	170, 968
SmaI	CCCGGG	1 cut(s)	839
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	81, 716
SmoI	CTYRAG	2 cut(s)	81, 716
Sse9I	AATT	2 cut(s)	863, 1000
SsiI	CCGC	2 cut(s)	721, 761
SspI	AATATT	1 cut(s)	188
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	3 cut(s)	836, 837, 975
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	3 cut(s)	502, 591, 1046
TaiI	ACGT	1 cut(s)	862
TasI	AATT	2 cut(s)	863, 1000
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	6 cut(s)	8, 156, 558, 672, 690, 851
Tru9I	TTAA	6 cut(s)	8, 156, 558, 672, 690, 851
TscAI	CASTG	3 cut(s)	21, 1028, 1051
TseFI	GTSAC	3 cut(s)	139, 491, 617
TseI	GCWGC	3 cut(s)	521, 698, 833
Tsp45I	GTSAC	3 cut(s)	139, 491, 617
TspMI	CCCGGG	1 cut(s)	837
TspRI	CASTG	3 cut(s)	21, 1028, 1051
VpaK11BI	GGWCC	2 cut(s)	170, 968
XapI	RAATTY	1 cut(s)	863
XceI	RCATGY	2 cut(s)	198, 365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XmaI	CCCGGG	1 cut(s)	837
XmnI	GAANNNNTTC	2 cut(s)	126, 400
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.