Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011590

Physical Location & Seq

Genomic Coordinates Reverse (-)

2819757 .. 2821121

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCAGATCCGTCCTGCTTTCCATGGGGCTCTATTCGGTCTCTGGATATGCCTGTTTACTTCAACCTTATGCTACGGTGATGATAAGACCATCGAGGCAGCCGGACAGCCAGGCAAAGTCGACTTCTCCGAGTTGAAAACAACTGATGCTGCGGAGCTAAATGAAGAGGGAAAGTTTGCAGTACTGCATAAGGTTCCCATTCTGAAGAAGCCATTTCCAAAAAAGCCCTACTTCAAGAAACCACCTCTACATAAGATTCCCACTTTCAAGAAGCCAATTCCTGTTTTCAAGATCCCACCGTTTAAGAAGCATCCTTCCCCGATTCCACAAGAAGAAAAGCCATTTTTGAAGAAGCCATTTTTCCATCCCATTCCAAAATTCAAAAAGCCATATTTCCATCCTATTCCTGTTTACAAGAAGCCAGTTTCCCCTCCGATTCCGATTTACAAGAAGCCCCCAGTTCCGGTATACAAGATTTTTCCCCCAATCCCTGTCTACAAGAAGCCATATTTCCATCCTATTCCGGTTTACAAGAAGCCAGTTTTCCCTCCGATTCCGATTTACAAGAAGCCCCCAGTTCCGGTATACAAGATTTTCCCCCCAATCCCTGTTTACAAGAAGCCATTCTTCCACCCAGTTCCAGTTTACAAAAAGCCCTACTATCCAATTCCGAAATATAAGAAGCCATGTCCTCCACATGTAGCTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

237

Amino Acids

27.37

Weight (kDa)

9.98

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02540
malus_domestica	MD02G1292200.v1.1 MD02G1292400.v1.1 MD07G1034400.v1.1
prunus_persica	Prupe.2G030800_v2.0.a1 Prupe.2G031000_v2.0.a1
pyrus_communis	pycom02g24680 pycom02g24690 pycom07g02430
rosa_chinensis	RchiOBHm_Chr1g0321181
rosa_laevigata	RLG00000030433
rosa_multiflora	Rmu_co8413183.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433780 Rroxscaffold_4G00328030
rosa_rugosa	Rorug01G0031800
rosa_samantha	Rh1AG043700 Rh1BG041200 Rh1CG046200 Rh1DG050900
rosa_wichuraiana	Rw1G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	4 cut(s)	120, 468, 495, 585
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	463, 580
AflIII	ACRYGT	1 cut(s)	697
AgsI	TTSAA	7 cut(s)	63, 136, 235, 268, 289, 349, 382
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	157, 704
AluI	AGCT	2 cut(s)	157, 704
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	98, 149
ApoI	RAATTY	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	623
AsuHPI	GGTGA	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	110, 136
BccI	CCATC	4 cut(s)	98, 372, 405, 522
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	44
BisI	GCNGC	2 cut(s)	99, 150
BlsI	GCNGC	2 cut(s)	100, 151
BmcAI	AGTACT	1 cut(s)	183
Bme1390I	CCNGG	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	111
BmrI	ACTGGG	3 cut(s)	452, 569, 629
BmsI	GCATC	2 cut(s)	136, 319
BmuI	ACTGGG	3 cut(s)	452, 569, 629
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	3 cut(s)	463, 523, 580
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 580
Bse1I	ACTGG	6 cut(s)	422, 458, 539, 575, 635, 641
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	4 cut(s)	310, 364, 397, 514
BseLI	CCNNNNNNNGG	2 cut(s)	463, 580
BseNI	ACTGG	6 cut(s)	422, 458, 539, 575, 635, 641
BseXI	GCAGC	2 cut(s)	110, 136
BsiSI	CCGG	4 cut(s)	102, 464, 524, 581
BslI	CCNNNNNNNGG	2 cut(s)	463, 580
BsmAI	GTCTC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	6, 291
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	44
BsrI	ACTGG	6 cut(s)	422, 458, 539, 575, 635, 641
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	2 cut(s)	6, 291
BssNAI	GTATAC	2 cut(s)	469, 586
BssT1I	CCWWGG	1 cut(s)	22
Bst1107I	GTATAC	2 cut(s)	469, 586
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	77, 300
Bst6I	CTCTTC	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	4 cut(s)	310, 364, 397, 514
BstKTI	GATC	2 cut(s)	9, 294
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	6, 291
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	110, 136
BstX2I	RGATCY	2 cut(s)	6, 291
BstYI	RGATCY	2 cut(s)	6, 291
BstZ17I	GTATAC	2 cut(s)	469, 586
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	4 cut(s)	310, 364, 397, 514
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	3 cut(s)	23, 687, 698
CviQI	GTAC	1 cut(s)	182
DpnI	GATC	2 cut(s)	8, 293
DpnII	GATC	2 cut(s)	6, 291
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	3 cut(s)	26, 690, 701
FalI	AAGNNNNNCTT	4 cut(s)	215, 247, 611, 643
FatI	CATG	3 cut(s)	22, 686, 697
FblI	GTMKAC	4 cut(s)	120, 468, 495, 585
Fnu4HI	GCNGC	2 cut(s)	99, 150
FokI	GGATG	4 cut(s)	297, 351, 384, 501
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	99, 150
GluI	GCNGC	2 cut(s)	99, 150
HapII	CCGG	4 cut(s)	102, 464, 524, 581
Hin1II	CATG	3 cut(s)	26, 690, 701
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	4 cut(s)	256, 322, 436, 553
HpaII	CCGG	4 cut(s)	102, 464, 524, 581
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	9 cut(s)	57, 121, 412, 469, 496, 529, 586, 613, 646
Hpy188I	TCNGA	7 cut(s)	130, 204, 435, 441, 552, 558, 672
Hpy188III	TCNNGA	4 cut(s)	43, 235, 268, 289
Hpy8I	GTNNAC	9 cut(s)	57, 121, 412, 469, 496, 529, 586, 613, 646
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	2 cut(s)	77, 300
HpyCH4V	TGCA	3 cut(s)	4, 179, 187
Hsp92II	CATG	3 cut(s)	26, 690, 701
Kzo9I	GATC	2 cut(s)	6, 291
LmnI	GCTCC	2 cut(s)	154, 709
Lsp1109I	GCAGC	2 cut(s)	110, 136
LweI	GCATC	2 cut(s)	136, 319
MalI	GATC	2 cut(s)	8, 293
MboI	GATC	2 cut(s)	6, 291
MboII	GAAGA	5 cut(s)	176, 217, 344, 361, 619
MflI	RGATCY	2 cut(s)	6, 291
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	3 cut(s)	276, 377, 666
MnlI	CCTC	6 cut(s)	88, 160, 255, 441, 558, 702
MroXI	GAANNNNTTC	1 cut(s)	623
MseI	TTAA	1 cut(s)	303
MspI	CCGG	4 cut(s)	102, 464, 524, 581
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	6, 291
NlaIII	CATG	3 cut(s)	26, 690, 701
NlaIV	GGNNCC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	701
PciI	ACATGT	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	623
PfeI	GAWTC	4 cut(s)	256, 322, 436, 553
PkrI	GCNGC	2 cut(s)	100, 151
PscI	ACATGT	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	195
PsuI	RGATCY	2 cut(s)	6, 291
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	2 cut(s)	99, 150
Sau3AI	GATC	2 cut(s)	6, 291
ScaI	AGTACT	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	5 cut(s)	68, 159, 195, 247, 706
SfaNI	GCATC	2 cut(s)	136, 319
Sse9I	AATT	3 cut(s)	276, 377, 666
SsiI	CCGC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	2 cut(s)	77, 300
TaqI	TCGA	2 cut(s)	93, 120
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	3 cut(s)	276, 377, 666
TatI	WGTACW	1 cut(s)	181
TfiI	GAWTC	4 cut(s)	256, 322, 436, 553
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseI	GCWGC	2 cut(s)	98, 149
TspDTI	ATGAA	1 cut(s)	177
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	701
XmiI	GTMKAC	4 cut(s)	120, 468, 495, 585
XmnI	GAANNNNTTC	1 cut(s)	623
ZrmI	AGTACT	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.