Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011590

Physical Location & Seq

Genomic Coordinates Forward (+)

34813693 .. 34815018

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1292200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCGATTCGTGTTGCTTTTCAAGGGGCTCTTCTGGGTCTCTGGTTATGCTTCTTTGCTGCAAGCTTCTGCTATAGCAATGGAGAGACCATTGAGGTAACTGGTGAACAAGCAGCAGCCAAAGCTTTTTCAGAGCTGCAAAGAGCAGAAGCTGCAGAAGTCAATGAAGAAGACAAATTTAAATTGCCTCCACACAAGCCATTCTTCAAGAAGCCGGCTCCACCTCATATCTTTCCTCCAAAGCCCTTTTTCAAGCCACTCCCTCCACCAGCTCCAGTCTATAAGATTCCTCCCTACAAAAAGGGTCATCCACCGGTTCCGGTTGTGGAAGAAAAGCCATTTCTGAAGAAGCCAATTTTCCATCCACTTCCAAAATTCAAGAAGCCACTTCTTCCGCCAATTCCAGTTTACAAGAAGCCACTTCCTCCGCCAATTCCAGTTTACAAGAAGCCACTTCCTCCGCCAATTCCAGTTTACAAGAAGCCACTTCCTCCACCAATTCCAGTTTACAAGAAGCCGTTTCCCCATCCAATCTTCAAGAAGCCGATTCCAAAATTCAAGAAGCCATTTCCTCCGCATCCATTCCTTGGGAAGCCATTTCCTCCGCATCCATTCCTTGGGAAGCCGTTACCTCCCACTGTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

216

Amino Acids

24.24

Weight (kDa)

10.03

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02540
malus_domestica	MD02G1292200.v1.1 MD02G1292400.v1.1 MD07G1034400.v1.1
prunus_persica	Prupe.2G030800_v2.0.a1 Prupe.2G031000_v2.0.a1
pyrus_communis	pycom02g24680 pycom02g24690 pycom07g02430
rosa_chinensis	RchiOBHm_Chr1g0321181
rosa_laevigata	RLG00000030433
rosa_multiflora	Rmu_co8413183.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433780 Rroxscaffold_4G00328030
rosa_rugosa	Rorug01G0031800
rosa_samantha	Rh1AG043700 Rh1BG041200 Rh1CG046200 Rh1DG050900
rosa_wichuraiana	Rw1G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	587, 617
AciI	CCGC	5 cut(s)	395, 428, 461, 575, 605
AcsI	RAATTY	3 cut(s)	176, 374, 554
AcuI	CTGAAG	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	587, 617
AgeI	ACCGGT	1 cut(s)	313
AgsI	TTSAA	6 cut(s)	23, 208, 253, 379, 538, 559
AluBI	AGCT	5 cut(s)	66, 125, 136, 152, 272
AluI	AGCT	5 cut(s)	66, 125, 136, 152, 272
Alw26I	GTCTC	2 cut(s)	44, 80
AlwNI	CAGNNNCTG	1 cut(s)	152
ApeKI	GCWGC	5 cut(s)	59, 113, 116, 136, 152
ApoI	RAATTY	3 cut(s)	176, 374, 554
AsiGI	ACCGGT	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	5 cut(s)	46, 123, 125, 128, 139
BccI	CCATC	2 cut(s)	369, 534
BceAI	ACGGC	2 cut(s)	502, 610
BcoDI	GTCTC	2 cut(s)	44, 80
BfmI	CTRYAG	2 cut(s)	73, 153
BisI	GCNGC	5 cut(s)	60, 114, 117, 137, 153
BlsI	GCNGC	5 cut(s)	61, 115, 118, 138, 154
BmiI	GGNNCC	2 cut(s)	219, 318
BmsI	GCATC	2 cut(s)	586, 616
BpiI	GAAGAC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	258
BsaI	GGTCTC	2 cut(s)	44, 80
BsaJI	CCNNGG	2 cut(s)	586, 616
BsaWI	WCCGGW	2 cut(s)	313, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	587, 617
Bse118I	RCCGGY	2 cut(s)	214, 313
Bse1I	ACTGG	6 cut(s)	106, 275, 404, 437, 470, 503
Bse3DI	GCAATG	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	586, 616
BseGI	GGATG	5 cut(s)	307, 361, 526, 577, 607
BseLI	CCNNNNNNNGG	2 cut(s)	587, 617
BseMI	GCAATG	1 cut(s)	85
BseNI	ACTGG	6 cut(s)	106, 275, 404, 437, 470, 503
BseXI	GCAGC	5 cut(s)	46, 123, 125, 128, 139
BshTI	ACCGGT	1 cut(s)	313
BsiSI	CCGG	3 cut(s)	215, 314, 320
BslI	CCNNNNNNNGG	2 cut(s)	587, 617
BsmAI	GTCTC	2 cut(s)	44, 80
Bso31I	GGTCTC	2 cut(s)	44, 80
Bsp1286I	GDGCHC	1 cut(s)	31
BspACI	CCGC	5 cut(s)	395, 428, 461, 575, 605
BspLI	GGNNCC	2 cut(s)	219, 318
BspMAI	CTGCAG	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	2 cut(s)	44, 80
BsrDI	GCAATG	1 cut(s)	85
BsrFI	RCCGGY	2 cut(s)	214, 313
BsrI	ACTGG	6 cut(s)	106, 275, 404, 437, 470, 503
BssAI	RCCGGY	2 cut(s)	214, 313
BssECI	CCNNGG	2 cut(s)	586, 616
BssT1I	CCWWGG	2 cut(s)	586, 616
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	64, 216
BstF5I	GGATG	5 cut(s)	307, 361, 526, 577, 607
BstMAI	GTCTC	2 cut(s)	44, 80
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 152
BstSFI	CTRYAG	2 cut(s)	73, 153
BstV1I	GCAGC	5 cut(s)	46, 123, 125, 128, 139
BstV2I	GAAGAC	1 cut(s)	177
BtsCI	GGATG	5 cut(s)	307, 361, 526, 577, 607
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	2 cut(s)	64, 216
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr10I	RCCGGY	2 cut(s)	214, 313
CspAI	ACCGGT	1 cut(s)	313
DraI	TTTAAA	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	3 cut(s)	384, 417, 450
Eco130I	CCWWGG	2 cut(s)	586, 616
Eco24I	GRGCYC	1 cut(s)	31
Eco31I	GGTCTC	2 cut(s)	44, 80
Eco57I	CTGAAG	1 cut(s)	365
EcoT14I	CCWWGG	2 cut(s)	586, 616
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	586, 616
FaiI	YATR	4 cut(s)	49, 75, 228, 282
FalI	AAGNNNNNCTT	4 cut(s)	15, 47, 188, 220
Fnu4HI	GCNGC	5 cut(s)	60, 114, 117, 137, 153
FokI	GGATG	5 cut(s)	294, 348, 513, 564, 594
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	5 cut(s)	60, 114, 117, 137, 153
GluI	GCNGC	5 cut(s)	60, 114, 117, 137, 153
GsuI	CTGGAG	1 cut(s)	258
HapII	CCGG	3 cut(s)	215, 314, 320
HindIII	AAGCTT	2 cut(s)	64, 123
HinfI	GANTC	3 cut(s)	7, 286, 547
HpaII	CCGG	3 cut(s)	215, 314, 320
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	5 cut(s)	107, 409, 442, 475, 508
Hpy188I	TCNGA	2 cut(s)	133, 345
Hpy188III	TCNNGA	4 cut(s)	208, 379, 538, 559
Hpy8I	GTNNAC	5 cut(s)	107, 409, 442, 475, 508
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4V	TGCA	3 cut(s)	62, 139, 155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 152
KroI	GCCGGC	1 cut(s)	214
KroNI	GCCGGC	1 cut(s)	216
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	223, 277
Lsp1109I	GCAGC	5 cut(s)	46, 123, 125, 128, 139
LweI	GCATC	2 cut(s)	586, 616
MaeIII	GTNAC	2 cut(s)	97, 627
MboII	GAAGA	8 cut(s)	23, 179, 182, 196, 341, 358, 383, 526
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	9 cut(s)	176, 182, 354, 374, 399, 432, 465, 498, 554
MroNI	GCCGGC	1 cut(s)	214
MseI	TTAA	1 cut(s)	180
MspI	CCGG	3 cut(s)	215, 314, 320
MwoI	GCNNNNNNNGC	2 cut(s)	122, 152
NaeI	GCCGGC	1 cut(s)	216
NgoMIV	GCCGGC	1 cut(s)	214
NlaIV	GGNNCC	2 cut(s)	219, 318
PciSI	GCTCTTC	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	7, 286, 547
PflMI	CCANNNNNTGG	2 cut(s)	587, 617
PinAI	ACCGGT	1 cut(s)	313
PkrI	GCNGC	5 cut(s)	61, 115, 118, 138, 154
PspN4I	GGNNCC	2 cut(s)	219, 318
PstI	CTGCAG	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	5 cut(s)	60, 114, 117, 137, 153
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	8 cut(s)	68, 99, 127, 138, 154, 226, 274, 634
SfaNI	GCATC	2 cut(s)	586, 616
SfcI	CTRYAG	2 cut(s)	73, 153
SmiI	ATTTAAAT	1 cut(s)	181
Sse9I	AATT	9 cut(s)	176, 182, 354, 374, 399, 432, 465, 498, 554
SsiI	CCGC	5 cut(s)	395, 428, 461, 575, 605
StyI	CCWWGG	2 cut(s)	586, 616
SwaI	ATTTAAAT	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	640
TasI	AATT	9 cut(s)	176, 182, 354, 374, 399, 432, 465, 498, 554
TfiI	GAWTC	3 cut(s)	7, 286, 547
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	1 cut(s)	643
TseI	GCWGC	5 cut(s)	59, 113, 116, 136, 152
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	643
Van91I	CCANNNNNTGG	2 cut(s)	587, 617
XapI	RAATTY	3 cut(s)	176, 374, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.