Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8413183.1

Orthogroup ID

OG0011590

Physical Location & Seq

Genomic Coordinates Forward (+)

599 .. 1355

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8413183.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgcacatccgtcctgctttccatggggctctactgggtctctggatctgcttgtttacttcaagcttctgctacggtgatgagaagaccatcgaggcagccggagggccaagcaaagttttctcagagttgaaaacaactgaggctgcagatctcaatgaagaggaaaagtttgcagtactaccaccaaagccgttcttcaagaaaccacttctgcacaaggttcccactctgaagaagccatttccacaaaagccgtacttcaagaaaccacctttacataatattcccattgtcaaaaagccatcaccaccatctgttcctgttttcaagatcccaccgttcaagaagccgattccttccccaattccacaagaagaaaaaccttttttgaagaagccatttttctatcctattccaaaattcaaaaagccatatttccatccagttccagtttacaagaagccaattttacccccagtgccggtttacaagaagccatatttccatccagttccggtttacaagaagccaattttccccccagtgccggtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

185

Amino Acids

21.18

Weight (kDa)

9.92

Isoelectric Point (pI)

65.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02540
malus_domestica	MD02G1292200.v1.1 MD02G1292400.v1.1 MD07G1034400.v1.1
prunus_persica	Prupe.2G030800_v2.0.a1 Prupe.2G031000_v2.0.a1
pyrus_communis	pycom02g24680 pycom02g24690 pycom07g02430
rosa_chinensis	RchiOBHm_Chr1g0321181
rosa_laevigata	RLG00000030433
rosa_multiflora	Rmu_co8413183.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433780 Rroxscaffold_4G00328030
rosa_rugosa	Rorug01G0031800
rosa_samantha	Rh1AG043700 Rh1BG041200 Rh1CG046200 Rh1DG050900
rosa_wichuraiana	Rw1G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	53, 328
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	2 cut(s)	180, 260
AfiI	CCNNNNNNNGG	2 cut(s)	484, 550
AgsI	TTSAA	8 cut(s)	63, 133, 202, 265, 331, 346, 394, 427
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	2 cut(s)	53, 328
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	98, 146
ApoI	RAATTY	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	89, 300
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	110, 133
BccI	CCATC	5 cut(s)	98, 313, 322, 450, 516
BceAI	ACGGC	2 cut(s)	178, 241
BcoDI	GTCTC	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	147
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	2 cut(s)	99, 147
BlsI	GCNGC	2 cut(s)	100, 148
BmcAI	AGTACT	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	225
BmrI	ACTGGG	3 cut(s)	44, 473, 539
BmuI	ACTGGG	3 cut(s)	44, 473, 539
BpiI	GAAGAC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 550
Bse118I	RCCGGY	2 cut(s)	484, 550
Bse1I	ACTGG	6 cut(s)	39, 446, 452, 479, 512, 545
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	3 cut(s)	6, 442, 508
BseLI	CCNNNNNNNGG	2 cut(s)	484, 550
BseMII	CTCAG	2 cut(s)	132, 138
BseNI	ACTGG	6 cut(s)	39, 446, 452, 479, 512, 545
BseXI	GCAGC	2 cut(s)	110, 133
BsgI	GTGCAG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	109
BsiSI	CCGG	4 cut(s)	102, 485, 518, 551
BslI	CCNNNNNNNGG	2 cut(s)	484, 550
BsmAI	GTCTC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	45, 151, 333
Bsp19I	CCATGG	1 cut(s)	22
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	133, 137
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	2 cut(s)	53, 328
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	2 cut(s)	484, 550
BsrI	ACTGG	6 cut(s)	39, 446, 452, 479, 512, 545
BssAI	RCCGGY	2 cut(s)	484, 550
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	45, 151, 333
BssT1I	CCWWGG	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	77, 342
Bst6I	CTCTTC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	124, 141
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	3 cut(s)	6, 442, 508
BstKTI	GATC	3 cut(s)	48, 154, 336
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	3 cut(s)	45, 151, 333
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	110, 133
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	3 cut(s)	45, 151, 333
BstYI	RGATCY	3 cut(s)	45, 151, 333
BsuRI	GGCC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	3 cut(s)	6, 442, 508
BtsIMutI	CAGTG	2 cut(s)	486, 552
Cfr10I	RCCGGY	2 cut(s)	484, 550
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	179, 259
CviAII	CATG	1 cut(s)	23
CviQI	GTAC	2 cut(s)	179, 259
DdeI	CTNAG	2 cut(s)	124, 141
DpnI	GATC	3 cut(s)	47, 153, 335
DpnII	GATC	3 cut(s)	45, 151, 333
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	1 cut(s)	26
FaiI	YATR	4 cut(s)	24, 282, 436, 502
FalI	AAGNNNNNCTT	4 cut(s)	182, 214, 245, 277
FatI	CATG	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	99, 147
FokI	GGATG	2 cut(s)	429, 495
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	99, 147
GluI	GCNGC	2 cut(s)	99, 147
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	4 cut(s)	102, 485, 518, 551
Hin1II	CATG	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	4 cut(s)	102, 485, 518, 551
HphI	GGTGA	2 cut(s)	89, 300
Hpy166II	GTNNAC	4 cut(s)	57, 457, 490, 523
Hpy188I	TCNGA	2 cut(s)	127, 234
Hpy188III	TCNNGA	5 cut(s)	43, 202, 265, 331, 346
Hpy8I	GTNNAC	4 cut(s)	57, 457, 490, 523
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	2 cut(s)	77, 342
HpyCH4V	TGCA	4 cut(s)	4, 149, 176, 217
HpyF3I	CTNAG	2 cut(s)	124, 141
Hsp92II	CATG	1 cut(s)	26
Kzo9I	GATC	3 cut(s)	45, 151, 333
Lsp1109I	GCAGC	2 cut(s)	110, 133
MalI	GATC	3 cut(s)	47, 153, 335
MboI	GATC	3 cut(s)	45, 151, 333
MboII	GAAGA	6 cut(s)	97, 173, 190, 247, 389, 406
MflI	RGATCY	3 cut(s)	45, 151, 333
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	4 cut(s)	366, 422, 468, 534
MnlI	CCTC	4 cut(s)	88, 98, 136, 157
MspI	CCGG	4 cut(s)	102, 485, 518, 551
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	3 cut(s)	45, 151, 333
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	100, 148
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	3 cut(s)	45, 151, 333
RsaI	GTAC	2 cut(s)	180, 260
RsaNI	GTAC	2 cut(s)	179, 259
SatI	GCNGC	2 cut(s)	99, 147
Sau3AI	GATC	3 cut(s)	45, 151, 333
Sau96I	GGNCC	1 cut(s)	107
ScaI	AGTACT	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	4 cut(s)	68, 225, 277, 388
SfcI	CTRYAG	1 cut(s)	147
Sse9I	AATT	4 cut(s)	366, 422, 468, 534
SspI	AATATT	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	2 cut(s)	77, 342
TaqI	TCGA	1 cut(s)	93
TasI	AATT	4 cut(s)	366, 422, 468, 534
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	355
TscAI	CASTG	2 cut(s)	486, 552
TseI	GCWGC	2 cut(s)	98, 146
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	2 cut(s)	486, 552
XapI	RAATTY	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.