Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011590

Physical Location & Seq

Genomic Coordinates Reverse (-)

8717564 .. 8719274

Gene Structure 1711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG046200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCTAAAAACAATAATGCTAATTAATGAATTTAGCTCATCTCTGGCCCTCAGACATTTAAGTGCAAGCAAAGCAAACCTCCTAGATATCTTCCCAAATTTGTTATATATAACAAGGCCAGCCTGTGGAATCAACTCATCAAGCACAAGAGCTACTTTCGTTACGCGCGCTATTCAGTGTAACACAAAGGTTCTCGACATGCACATCCGTCCTGCTTTCCATGGGGCTCTACTGGGTCTCTGGATCTGCTTGTTTATTTCAAGCTTCTGCTACGGTGATGAGAAGACCATCGAGGCAGCCGGAGGGCCAAGCAAAGTTTTCTCAGAGTTGAAAACAACTGAGGCTGCAGATCTCAATGAAGAGGAAAAGTTTGCAGTACTACCACCAAAGCCGTTCTTCAAGAAACCACTTCTGCACAAGGTTCCCACTCTGAAGAAGCCAATTCCACAAAAGCCGTACTTCAAGAAACCACCTTTACATAATATTCCCATTATCAAAAAGCCATCACCACCATCTGTTCCTGTTTTCAAGATCCCACCGTTCAAGAAGCCTATTCCTTCCCCAATTCCACAAGAAGAAAAACCTTTTTTGAAGAAGCCATTTGTCCATCCTATTCCAAAATTCAAAAAGCCATATTTCCATCCAGTTCCAGTTTACAAGAAGCCAATTTTACCCCCAGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCAATTTTCCCCCCAGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCAATTCCCCCCCCAGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCAATTTTCCCCCCAGTGCCGGTTTACAAGAAGCCATGTCCTCCACTTCCGGTTTACAAGAAGCCAGTTTTCTCCCCAGTTCCGGTTTACAAGAAACCATTATTCCCTCCAGTTCCAAAATTTAAGAAGCCATTTCCTCCACATGTGGCTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

338

Amino Acids

38.47

Weight (kDa)

10.05

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02540
malus_domestica	MD02G1292200.v1.1 MD02G1292400.v1.1 MD07G1034400.v1.1
prunus_persica	Prupe.2G030800_v2.0.a1 Prupe.2G031000_v2.0.a1
pyrus_communis	pycom02g24680 pycom02g24690 pycom07g02430
rosa_chinensis	RchiOBHm_Chr1g0321181
rosa_laevigata	RLG00000030433
rosa_multiflora	Rmu_co8413183.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433780 Rroxscaffold_4G00328030
rosa_rugosa	Rorug01G0031800
rosa_samantha	Rh1AG043700 Rh1BG041200 Rh1CG046200 Rh1DG050900
rosa_wichuraiana	Rw1G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccII	CGCG	2 cut(s)	166, 168
AclWI	GGATC	2 cut(s)	251, 526
AcsI	RAATTY	4 cut(s)	29, 97, 620, 980
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	2 cut(s)	378, 458
AfiI	CCNNNNNNNGG	6 cut(s)	125, 682, 748, 814, 880, 943
AflIII	ACRYGT	1 cut(s)	1003
AgsI	TTSAA	8 cut(s)	261, 331, 400, 463, 529, 544, 592, 625
AluBI	AGCT	3 cut(s)	36, 152, 264
AluI	AGCT	3 cut(s)	36, 152, 264
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	2 cut(s)	251, 526
AoxI	GGCC	3 cut(s)	45, 116, 305
ApeKI	GCWGC	2 cut(s)	296, 344
ApoI	RAATTY	4 cut(s)	29, 97, 620, 980
AseI	ATTAAT	1 cut(s)	24
AspLEI	GCGC	2 cut(s)	168, 170
AspS9I	GGNCC	2 cut(s)	46, 305
AsuHPI	GGTGA	2 cut(s)	287, 498
BanII	GRGCYC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	2 cut(s)	308, 331
BccI	CCATC	8 cut(s)	296, 511, 520, 615, 648, 714, 780, 846
BceAI	ACGGC	2 cut(s)	376, 439
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	83, 1015
BfmI	CTRYAG	1 cut(s)	345
BglII	AGATCT	1 cut(s)	349
BisI	GCNGC	2 cut(s)	297, 345
BlsI	GCNGC	2 cut(s)	298, 346
BmcAI	AGTACT	1 cut(s)	378
BmgT120I	GGNCC	2 cut(s)	46, 305
BmiI	GGNNCC	2 cut(s)	423, 1011
BmrI	ACTGGG	6 cut(s)	242, 671, 737, 803, 869, 932
BmuI	ACTGGG	6 cut(s)	242, 671, 737, 803, 869, 932
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	954
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	5 cut(s)	715, 781, 847, 910, 943
Bsc4I	CCNNNNNNNGG	6 cut(s)	125, 682, 748, 814, 880, 943
Bse118I	RCCGGY	4 cut(s)	682, 748, 814, 880
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	6 cut(s)	204, 607, 640, 706, 772, 838
BseLI	CCNNNNNNNGG	6 cut(s)	125, 682, 748, 814, 880, 943
BseMII	CTCAG	3 cut(s)	64, 330, 336
BsePI	GCGCGC	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	308, 331
BsgI	GTGCAG	1 cut(s)	398
Bsh1236I	CGCG	2 cut(s)	166, 168
BshFI	GGCC	3 cut(s)	47, 118, 307
BslI	CCNNNNNNNGG	6 cut(s)	125, 682, 748, 814, 880, 943
BsmAI	GTCTC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	47, 118, 307
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	243, 349, 531
Bsp19I	CCATGG	1 cut(s)	220
BspANI	GGCC	3 cut(s)	47, 118, 307
BspCNI	CTCAG	3 cut(s)	63, 331, 335
BspFNI	CGCG	2 cut(s)	166, 168
BspLI	GGNNCC	2 cut(s)	423, 1011
BspMAI	CTGCAG	1 cut(s)	349
BspPI	GGATC	2 cut(s)	251, 526
BspTNI	GGTCTC	1 cut(s)	242
BsrFI	RCCGGY	4 cut(s)	682, 748, 814, 880
BssAI	RCCGGY	4 cut(s)	682, 748, 814, 880
BssECI	CCNNGG	1 cut(s)	220
BssHII	GCGCGC	1 cut(s)	166
BssMI	GATC	3 cut(s)	243, 349, 531
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	275, 540
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	67, 120, 168
BstDEI	CTNAG	3 cut(s)	50, 322, 339
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	6 cut(s)	204, 607, 640, 706, 772, 838
BstFNI	CGCG	2 cut(s)	166, 168
BstHHI	GCGC	2 cut(s)	168, 170
BstKTI	GATC	3 cut(s)	246, 352, 534
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	3 cut(s)	243, 349, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	2 cut(s)	202, 1007
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	2 cut(s)	166, 168
BstV1I	GCAGC	2 cut(s)	308, 331
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	3 cut(s)	243, 349, 531
BstYI	RGATCY	3 cut(s)	243, 349, 531
BsuRI	GGCC	3 cut(s)	47, 118, 307
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	6 cut(s)	204, 607, 640, 706, 772, 838
BtsIMutI	CAGTG	5 cut(s)	182, 684, 750, 816, 882
Cac8I	GCNNGC	3 cut(s)	67, 120, 168
CfoI	GCGC	2 cut(s)	168, 170
Cfr10I	RCCGGY	4 cut(s)	682, 748, 814, 880
Cfr13I	GGNCC	2 cut(s)	46, 305
Csp6I	GTAC	2 cut(s)	377, 457
CviAII	CATG	4 cut(s)	199, 221, 897, 1004
CviQI	GTAC	2 cut(s)	377, 457
DdeI	CTNAG	3 cut(s)	50, 322, 339
DpnI	GATC	3 cut(s)	245, 351, 533
DpnII	GATC	3 cut(s)	243, 349, 531
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	4 cut(s)	202, 224, 900, 1007
FalI	AAGNNNNNCTT	6 cut(s)	139, 171, 380, 412, 443, 475
FatI	CATG	4 cut(s)	198, 220, 896, 1003
Fnu4HI	GCNGC	2 cut(s)	297, 345
FokI	GGATG	6 cut(s)	191, 594, 627, 693, 759, 825
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	2 cut(s)	297, 345
FspBI	CTAG	2 cut(s)	83, 1015
GlaI	GCGC	2 cut(s)	167, 169
GluI	GCNGC	2 cut(s)	297, 345
GsuI	CTGGAG	1 cut(s)	954
HaeIII	GGCC	3 cut(s)	47, 118, 307
HhaI	GCGC	2 cut(s)	168, 170
Hin1II	CATG	4 cut(s)	202, 224, 900, 1007
Hin6I	GCGC	2 cut(s)	166, 168
HinP1I	GCGC	2 cut(s)	166, 168
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	1 cut(s)	129
HphI	GGTGA	2 cut(s)	287, 498
Hpy188I	TCNGA	3 cut(s)	53, 325, 432
Hpy188III	TCNNGA	6 cut(s)	194, 241, 400, 463, 529, 544
HpyAV	CCTTC	1 cut(s)	567
HpyCH4III	ACNGT	2 cut(s)	275, 540
HpyCH4V	TGCA	5 cut(s)	65, 202, 347, 374, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	3 cut(s)	50, 322, 339
Hsp92II	CATG	4 cut(s)	202, 224, 900, 1007
HspAI	GCGC	2 cut(s)	166, 168
Kzo9I	GATC	3 cut(s)	243, 349, 531
LmnI	GCTCC	1 cut(s)	1015
Lsp1109I	GCAGC	2 cut(s)	308, 331
MaeI	CTAG	2 cut(s)	83, 1015
MaeIII	GTNAC	2 cut(s)	160, 179
MalI	GATC	3 cut(s)	245, 351, 533
MboI	GATC	3 cut(s)	243, 349, 531
MboII	GAAGA	7 cut(s)	82, 295, 371, 388, 445, 587, 604
MflI	RGATCY	3 cut(s)	243, 349, 531
MhlI	GDGCHC	1 cut(s)	229
MnlI	CCTC	9 cut(s)	59, 89, 286, 296, 334, 355, 912, 978, 1008
MseI	TTAA	3 cut(s)	24, 59, 984
MslI	CAYNNNNRTG	1 cut(s)	60
MvnI	CGCG	2 cut(s)	166, 168
MwoI	GCNNNNNNNGC	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	3 cut(s)	243, 349, 531
NlaIII	CATG	4 cut(s)	202, 224, 900, 1007
NlaIV	GGNNCC	2 cut(s)	423, 1011
NspI	RCATGY	2 cut(s)	202, 1007
PauI	GCGCGC	1 cut(s)	166
PciI	ACATGT	1 cut(s)	1003
PfeI	GAWTC	1 cut(s)	129
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	298, 346
PscI	ACATGT	1 cut(s)	1003
PshBI	ATTAAT	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	423, 1011
PspPI	GGNCC	2 cut(s)	46, 305
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	3 cut(s)	243, 349, 531
PteI	GCGCGC	1 cut(s)	166
RsaI	GTAC	2 cut(s)	378, 458
RsaNI	GTAC	2 cut(s)	377, 457
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	24, 59, 984
SatI	GCNGC	2 cut(s)	297, 345
Sau3AI	GATC	3 cut(s)	243, 349, 531
Sau96I	GGNCC	2 cut(s)	46, 305
ScaI	AGTACT	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	8 cut(s)	38, 81, 154, 192, 266, 423, 475, 586
SfcI	CTRYAG	1 cut(s)	345
SmiMI	CAYNNNNRTG	1 cut(s)	60
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	2 cut(s)	83, 1015
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	275, 540
TaqI	TCGA	2 cut(s)	195, 291
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	3 cut(s)	24, 59, 984
Tru9I	TTAA	3 cut(s)	24, 59, 984
TscAI	CASTG	5 cut(s)	182, 684, 750, 816, 882
TseI	GCWGC	2 cut(s)	296, 344
TspDTI	ATGAA	2 cut(s)	42, 372
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	5 cut(s)	182, 684, 750, 816, 882
Van91I	CCANNNNNTGG	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	4 cut(s)	29, 97, 620, 980
XceI	RCATGY	2 cut(s)	202, 1007
XspI	CTAG	2 cut(s)	83, 1015
ZrmI	AGTACT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.