Rw1G003840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0011590
Physical Location & Seq
Reverse (-)
7290619 .. 7291920
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003840.1

Sequence Viewer

Length: 972 bp
ATGCACATCCGTCCTGCTTTCCATGGGGCTCTACTGGGTCTGTGGATCTGCTTGTTTACTTCAAGCTTCTGCTACGGTGATGAGAAGACCATCGAGGCAGCCGGAGGGCCAAGCAAAGTTTTCTCAGAGTTGAAAACAACTGAGGCTGCAGATCTCAATGAAGAGGAAAAGTTTGCAGTACTACCACCAAAGCCGTTCTTCAAGAAACCACTTCTGCACAAGGTTCCCACTCTGAAGAAGCCATTTCCACAAAAGCCGTACTTCAAGAAACCACCTTTACATAATATTCCCATTGTCAAAAAGCCATCACCACCATCTGTTCCTGTTTTCAAGATCCCACCGTTCAAGAAGCCGATTCCTTCCCCAATTCCACAAGAAGAAAAACCTTTTTTGAAGAAGCCATTTGTCTATCCTATTCCAAAATTCAAAAAGCCATATTTCCATCCAGTTCCAGTTTACAAGAAGCCAATTTTACCCCCAGTGCCGATTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCAATTTTCCCCCCAGTGCCAGTTTACAAGAAGCCATATTATCCAGTTCCAGTTTACAAGAAGCCATATTATCCAGTTCCAGTTTACAAGAAGCCAATTCCCCCCCCAGTGCCGGTTTACAAGAAGCCATATTATCCAGTTCCGGTTTACAAGAAGCCAATTCCCCCCCCAGTGCCGGTTTACAAGAAGCCATATTATCCAGTTCCGGTTTACAAGAAGCCAATTCCCCCCCCAGTGCCGGTTTACAAGAAGCCATGTCCTCCACTTCCGGTTTACAAGAAGCCAATTTTCCCCCCAATTCCGGTTTACAAAAAACCATTTTTCCCCCCAGTTCCGAAATTTAAGAAGCCAGTTTTCTCCCCAGTTCCGGTTTACAAGAAACCATTATTCCCTCTAGTTCCAAAATTTAAGAAGCCATTTCCTCCACATGTGGCTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

323

Amino Acids

37.26

Weight (kDa)

10.04

Isoelectric Point (pI)

66.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 53, 328
AcsI RAATTY 3 cut(s) 422, 869, 935
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 2 cut(s) 180, 260
AfiI CCNNNNNNNGG 5 cut(s) 643, 706, 769, 832, 898
AflIII ACRYGT 1 cut(s) 958
AgsI TTSAA 8 cut(s) 63, 133, 202, 265, 331, 346, 394, 427
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
AlwI GGATC 2 cut(s) 53, 328
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 98, 146
ApoI RAATTY 3 cut(s) 422, 869, 935
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 89, 300
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 110, 133
BccI CCATC 5 cut(s) 98, 313, 322, 450, 516
BceAI ACGGC 2 cut(s) 178, 241
BfaI CTAG 2 cut(s) 926, 970
BfmI CTRYAG 1 cut(s) 147
BglII AGATCT 1 cut(s) 151
BisI GCNGC 2 cut(s) 99, 147
BlsI GCNGC 2 cut(s) 100, 148
BmcAI AGTACT 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 225, 966
BmrI ACTGGG 8 cut(s) 44, 473, 539, 632, 695, 758, 854, 887
BmuI ACTGGG 8 cut(s) 44, 473, 539, 632, 695, 758, 854, 887
BpiI GAAGAC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 6 cut(s) 517, 673, 736, 799, 832, 898
Bsc4I CCNNNNNNNGG 5 cut(s) 643, 706, 769, 832, 898
Bse118I RCCGGY 3 cut(s) 643, 706, 769
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 3 cut(s) 6, 442, 508
BseLI CCNNNNNNNGG 5 cut(s) 643, 706, 769, 832, 898
BseMII CTCAG 2 cut(s) 132, 138
BseXI GCAGC 2 cut(s) 110, 133
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 109
BslI CCNNNNNNNGG 5 cut(s) 643, 706, 769, 832, 898
BsnI GGCC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 45, 151, 333
Bsp19I CCATGG 1 cut(s) 22
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 133, 137
BspLI GGNNCC 2 cut(s) 225, 966
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 2 cut(s) 53, 328
BsrFI RCCGGY 3 cut(s) 643, 706, 769
BssAI RCCGGY 3 cut(s) 643, 706, 769
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 3 cut(s) 45, 151, 333
BssT1I CCWWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 77, 342
Bst6I CTCTTC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 124, 141
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 3 cut(s) 6, 442, 508
BstKTI GATC 3 cut(s) 48, 154, 336
BstMBI GATC 3 cut(s) 45, 151, 333
BstNSI RCATGY 1 cut(s) 962
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 110, 133
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 3 cut(s) 45, 151, 333
BstYI RGATCY 3 cut(s) 45, 151, 333
BsuRI GGCC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 3 cut(s) 6, 442, 508
BtsIMutI CAGTG 5 cut(s) 486, 552, 645, 708, 771
Cfr10I RCCGGY 3 cut(s) 643, 706, 769
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 179, 259
CviAII CATG 3 cut(s) 23, 786, 959
CviQI GTAC 2 cut(s) 179, 259
DdeI CTNAG 2 cut(s) 124, 141
DpnI GATC 3 cut(s) 47, 153, 335
DpnII GATC 3 cut(s) 45, 151, 333
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 3 cut(s) 26, 789, 962
FalI AAGNNNNNCTT 4 cut(s) 182, 214, 245, 277
FatI CATG 3 cut(s) 22, 785, 958
Fnu4HI GCNGC 2 cut(s) 99, 147
FokI GGATG 2 cut(s) 429, 495
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 99, 147
FspBI CTAG 2 cut(s) 926, 970
GluI GCNGC 2 cut(s) 99, 147
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 3 cut(s) 26, 789, 962
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 1 cut(s) 355
HphI GGTGA 2 cut(s) 89, 300
Hpy188I TCNGA 3 cut(s) 127, 234, 867
Hpy188III TCNNGA 4 cut(s) 202, 265, 331, 346
HpyAV CCTTC 1 cut(s) 369
HpyCH4III ACNGT 2 cut(s) 77, 342
HpyCH4V TGCA 4 cut(s) 4, 149, 176, 217
HpyF3I CTNAG 2 cut(s) 124, 141
Hsp92II CATG 3 cut(s) 26, 789, 962
Kzo9I GATC 3 cut(s) 45, 151, 333
LmnI GCTCC 1 cut(s) 970
Lsp1109I GCAGC 2 cut(s) 110, 133
MaeI CTAG 2 cut(s) 926, 970
MalI GATC 3 cut(s) 47, 153, 335
MboI GATC 3 cut(s) 45, 151, 333
MboII GAAGA 6 cut(s) 97, 173, 190, 247, 389, 406
MflI RGATCY 3 cut(s) 45, 151, 333
MhlI GDGCHC 1 cut(s) 31
MnlI CCTC 7 cut(s) 88, 98, 136, 157, 801, 933, 963
MseI TTAA 2 cut(s) 873, 939
NcoI CCATGG 1 cut(s) 22
NdeII GATC 3 cut(s) 45, 151, 333
NlaIII CATG 3 cut(s) 26, 789, 962
NlaIV GGNNCC 2 cut(s) 225, 966
NspI RCATGY 1 cut(s) 962
PciI ACATGT 1 cut(s) 958
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 2 cut(s) 100, 148
PscI ACATGT 1 cut(s) 958
PspN4I GGNNCC 2 cut(s) 225, 966
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 3 cut(s) 45, 151, 333
RsaI GTAC 2 cut(s) 180, 260
RsaNI GTAC 2 cut(s) 179, 259
SaqAI TTAA 2 cut(s) 873, 939
SatI GCNGC 2 cut(s) 99, 147
Sau3AI GATC 3 cut(s) 45, 151, 333
Sau96I GGNCC 1 cut(s) 107
ScaI AGTACT 1 cut(s) 180
SduI GDGCHC 1 cut(s) 31
SetI ASST 4 cut(s) 68, 225, 277, 388
SfcI CTRYAG 1 cut(s) 147
SspI AATATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 926, 970
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 77, 342
TaqI TCGA 1 cut(s) 93
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 2 cut(s) 873, 939
Tru9I TTAA 2 cut(s) 873, 939
TscAI CASTG 5 cut(s) 486, 552, 645, 708, 771
TseI GCWGC 2 cut(s) 98, 146
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 5 cut(s) 486, 552, 645, 708, 771
XapI RAATTY 3 cut(s) 422, 869, 935
XceI RCATGY 1 cut(s) 962
XspI CTAG 2 cut(s) 926, 970
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.