Rroxscaffold_4G00328030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011590
Physical Location & Seq
Forward (+)
60902163 .. 60903223
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328030.1

Sequence Viewer

Length: 786 bp
ATGCACATCCGTCCTGCTTTCCATGGGGCTCTACTGGGTCTCTGGATCTGCTTGTTTACTTCAAGCTTCTGCTACGGTGATGAGAAGACCATCGAGGCAGCCGGAGGGCCAAGCAAAGTTTTCTCAGAGTTGAAAACAACTGAGGCTGCAGAGCTCAATGAAGAGGGAAAGTTTGCAGTACTGCCACCAAAGCCGTTCTTCAAGAAACCACTTCTGCACAAGGTTCCCACTCTGAAGAAGCCATTTCCACAAAAGCCGTACTTCAAGAAACCACCTTTACATAATATTCCCATTGTCAAAAAGCCATCACCACCATCTGTTCCTGTTTTCAAGATCCCACCGTTCAAGAAGCCGATTCCTTCCCCAATTCCACAAGAAGAAAAACCTTTTTTGAAGAAGCCATATTTCCATCCAGTTCCAGTTTACAAGAAGCCAATTTTCCCCCCAGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTTACAAAGAAGCCAATTTTCCCCCCAGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCAATTCCCCCCAGTGCCGGTTTACAAGAAGCCATATTTTCATCCAGTTCCGGTTTACAAGAAGCCAATTTTCCCCCCAGTGCCGGTTTACAAGAAGCCATGTCCTCCACTTCCGGTTTACAAGAAGCCAATTTTGCCCCCAATTCCGGTTTACAAGAAACCATTTTTCCCTCCAGTTCCAAAATTTAAGAAGCCATTTCCTCCACATGTGGCTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

261

Amino Acids

30.03

Weight (kDa)

10.15

Isoelectric Point (pI)

71.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 53, 328
AcsI RAATTY 1 cut(s) 749
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 2 cut(s) 180, 260
AfiI CCNNNNNNNGG 5 cut(s) 451, 519, 583, 649, 712
AflIII ACRYGT 1 cut(s) 772
AgsI TTSAA 7 cut(s) 63, 133, 202, 265, 331, 346, 394
AluBI AGCT 2 cut(s) 66, 154
AluI AGCT 2 cut(s) 66, 154
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 2 cut(s) 53, 328
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 98, 146
ApoI RAATTY 1 cut(s) 749
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 89, 300
BanII GRGCYC 2 cut(s) 31, 156
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 110, 133
BccI CCATC 6 cut(s) 98, 313, 322, 417, 483, 551
BceAI ACGGC 2 cut(s) 178, 241
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 784
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 2 cut(s) 99, 147
BlsI GCNGC 2 cut(s) 100, 148
BmcAI AGTACT 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 225, 780
BmrI ACTGGG 5 cut(s) 44, 440, 508, 572, 638
BmuI ACTGGG 5 cut(s) 44, 440, 508, 572, 638
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 723
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 5 cut(s) 484, 552, 616, 679, 712
Bsc4I CCNNNNNNNGG 5 cut(s) 451, 519, 583, 649, 712
Bse118I RCCGGY 4 cut(s) 451, 519, 583, 649
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 5 cut(s) 6, 409, 475, 543, 607
BseLI CCNNNNNNNGG 5 cut(s) 451, 519, 583, 649, 712
BseMII CTCAG 2 cut(s) 132, 138
BseXI GCAGC 2 cut(s) 110, 133
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 156
BslI CCNNNNNNNGG 5 cut(s) 451, 519, 583, 649, 712
BsmAI GTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 44
Bsp1286I GDGCHC 2 cut(s) 31, 156
Bsp143I GATC 2 cut(s) 45, 333
Bsp19I CCATGG 1 cut(s) 22
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 133, 137
BspLI GGNNCC 2 cut(s) 225, 780
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 2 cut(s) 53, 328
BspTNI GGTCTC 1 cut(s) 44
BsrFI RCCGGY 4 cut(s) 451, 519, 583, 649
BssAI RCCGGY 4 cut(s) 451, 519, 583, 649
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 2 cut(s) 45, 333
BssT1I CCWWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 77, 342
Bst6I CTCTTC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 124, 141
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 5 cut(s) 6, 409, 475, 543, 607
BstKTI GATC 2 cut(s) 48, 336
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 45, 333
BstMWI GCNNNNNNNGC 2 cut(s) 190, 700
BstNSI RCATGY 1 cut(s) 776
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 110, 133
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 2 cut(s) 45, 333
BstYI RGATCY 2 cut(s) 45, 333
BsuRI GGCC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 5 cut(s) 6, 409, 475, 543, 607
BtsIMutI CAGTG 4 cut(s) 453, 521, 585, 651
Cfr10I RCCGGY 4 cut(s) 451, 519, 583, 649
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 179, 259
CviAII CATG 3 cut(s) 23, 666, 773
CviQI GTAC 2 cut(s) 179, 259
DdeI CTNAG 2 cut(s) 124, 141
DpnI GATC 2 cut(s) 47, 335
DpnII GATC 2 cut(s) 45, 333
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 31, 156
Eco31I GGTCTC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 22
EcoT38I GRGCYC 2 cut(s) 31, 156
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 3 cut(s) 26, 669, 776
FaiI YATR 8 cut(s) 24, 282, 403, 469, 537, 601, 667, 774
FalI AAGNNNNNCTT 4 cut(s) 182, 214, 245, 277
FatI CATG 3 cut(s) 22, 665, 772
Fnu4HI GCNGC 2 cut(s) 99, 147
FokI GGATG 4 cut(s) 396, 462, 530, 594
FriOI GRGCYC 2 cut(s) 31, 156
Fsp4HI GCNGC 2 cut(s) 99, 147
FspBI CTAG 1 cut(s) 784
GluI GCNGC 2 cut(s) 99, 147
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 3 cut(s) 26, 669, 776
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 1 cut(s) 355
HphI GGTGA 2 cut(s) 89, 300
Hpy188I TCNGA 2 cut(s) 127, 234
Hpy188III TCNNGA 5 cut(s) 43, 202, 265, 331, 346
HpyAV CCTTC 1 cut(s) 369
HpyCH4III ACNGT 2 cut(s) 77, 342
HpyCH4V TGCA 4 cut(s) 4, 149, 176, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 700
HpyF3I CTNAG 2 cut(s) 124, 141
Hsp92II CATG 3 cut(s) 26, 669, 776
Kzo9I GATC 2 cut(s) 45, 333
LmnI GCTCC 1 cut(s) 784
Lsp1109I GCAGC 2 cut(s) 110, 133
MaeI CTAG 1 cut(s) 784
MalI GATC 2 cut(s) 47, 335
MboI GATC 2 cut(s) 45, 333
MboII GAAGA 6 cut(s) 97, 173, 190, 247, 389, 406
MflI RGATCY 2 cut(s) 45, 333
MhlI GDGCHC 2 cut(s) 31, 156
MluCI AATT 8 cut(s) 366, 435, 503, 569, 633, 696, 708, 749
MnlI CCTC 7 cut(s) 88, 98, 136, 157, 681, 747, 777
MseI TTAA 1 cut(s) 753
MwoI GCNNNNNNNGC 2 cut(s) 190, 700
NcoI CCATGG 1 cut(s) 22
NdeII GATC 2 cut(s) 45, 333
NlaIII CATG 3 cut(s) 26, 669, 776
NlaIV GGNNCC 2 cut(s) 225, 780
NspI RCATGY 1 cut(s) 776
PciI ACATGT 1 cut(s) 772
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 2 cut(s) 100, 148
PscI ACATGT 1 cut(s) 772
Psp124BI GAGCTC 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 225, 780
PspPI GGNCC 1 cut(s) 107
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 2 cut(s) 45, 333
RsaI GTAC 2 cut(s) 180, 260
RsaNI GTAC 2 cut(s) 179, 259
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 2 cut(s) 99, 147
Sau3AI GATC 2 cut(s) 45, 333
Sau96I GGNCC 1 cut(s) 107
ScaI AGTACT 1 cut(s) 180
SduI GDGCHC 2 cut(s) 31, 156
SetI ASST 5 cut(s) 68, 156, 225, 277, 388
SfcI CTRYAG 1 cut(s) 147
Sse9I AATT 8 cut(s) 366, 435, 503, 569, 633, 696, 708, 749
SspI AATATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 784
SstI GAGCTC 1 cut(s) 156
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 77, 342
TaqI TCGA 1 cut(s) 93
TasI AATT 8 cut(s) 366, 435, 503, 569, 633, 696, 708, 749
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 4 cut(s) 453, 521, 585, 651
TseI GCWGC 2 cut(s) 98, 146
TspDTI ATGAA 2 cut(s) 174, 596
TspRI CASTG 4 cut(s) 453, 521, 585, 651
XapI RAATTY 1 cut(s) 749
XceI RCATGY 1 cut(s) 776
XspI CTAG 1 cut(s) 784
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.