Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011590

Physical Location & Seq

Genomic Coordinates Reverse (-)

8693334 .. 8694760

Gene Structure 1427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55125

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCACATCCGTCCTGCTTTCCATGGGGCTCTACTGGGTCTCTGGATCTGCTTGTTTACTTCAAGCTTCTGCTACGGTGATGAGAAGACCATCGAGGCAGCCGGAGGGCCAAGCAAAGTTTTCTCAGAGTTGAAAACAACTGAGGCTGCAGATCTCAATGAAGAGGAAAAGTTTGCAGTACTACCACCAAAGCCGTTCTTCAAGAAACCACTTCTGCACAAGGTTCCCACTCTGAAGAAGCCATTTCCACAAAAGCCGTACTTCAAGAAACCACCTTTACATAATATTCCCATTGTCAAAAAGCCATCACCACCATCTGTTCCTGTTTTCAAGATCCCACCGTTCAAGAAGCCGATTCCTTCCCCAATTCCACAAGAAGAAAAACCTTTTTTGAAGAAGCCATTTGTCCATCCTATTCCAAAATTCAAAAAGCCATATTTCCATCCAGTTCCAGTTTACAAGAAGCCAATTTTACCCCCAGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCAATTGTCCCCCCAGTGCCGGTTTACAAGAAGCCATATTATCCAGTTCCGGTTTACAAGAAGCCAATTCCCCCCCCATGCCGGTTTACAAGAAGCCATATTATCCAGTGCCGGTTTACAAGAAGCCATGTCCTCCACTTCCGGTTTACAAGAAGCCAATTTTCCCCCCAATTCCGGTTTACAAAAAACCATTTTTCCCCCCAGTTCCGAAATTTAAGAAGCCAGTTTTCTCCCCAGTTCCGGTTTACAAGAAACCATTATTCCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

266

Amino Acids

31.15

Weight (kDa)

10.29

Isoelectric Point (pI)

67.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02540
malus_domestica	MD02G1292200.v1.1 MD02G1292400.v1.1 MD07G1034400.v1.1
prunus_persica	Prupe.2G030800_v2.0.a1 Prupe.2G031000_v2.0.a1
pyrus_communis	pycom02g24680 pycom02g24690 pycom07g02430
rosa_chinensis	RchiOBHm_Chr1g0321181
rosa_laevigata	RLG00000030433
rosa_multiflora	Rmu_co8413183.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433780 Rroxscaffold_4G00328030
rosa_rugosa	Rorug01G0031800
rosa_samantha	Rh1AG043700 Rh1BG041200 Rh1CG046200 Rh1DG050900
rosa_wichuraiana	Rw1G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	53, 328
AcsI	RAATTY	2 cut(s)	422, 742
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	2 cut(s)	180, 260
AfiI	CCNNNNNNNGG	5 cut(s)	484, 550, 612, 705, 771
AgsI	TTSAA	8 cut(s)	63, 133, 202, 265, 331, 346, 394, 427
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	2 cut(s)	53, 328
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	98, 146
ApoI	RAATTY	2 cut(s)	422, 742
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	89, 300
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	110, 133
BccI	CCATC	6 cut(s)	98, 313, 322, 417, 450, 516
BceAI	ACGGC	2 cut(s)	178, 241
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	799
BfmI	CTRYAG	1 cut(s)	147
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	2 cut(s)	99, 147
BlsI	GCNGC	2 cut(s)	100, 148
BmcAI	AGTACT	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	225
BmrI	ACTGGG	5 cut(s)	44, 473, 539, 727, 760
BmuI	ACTGGG	5 cut(s)	44, 473, 539, 727, 760
BpiI	GAAGAC	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	22
BsaWI	WCCGGW	5 cut(s)	517, 580, 672, 705, 771
Bsc4I	CCNNNNNNNGG	5 cut(s)	484, 550, 612, 705, 771
Bse118I	RCCGGY	4 cut(s)	484, 550, 612, 642
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	4 cut(s)	6, 409, 442, 508
BseLI	CCNNNNNNNGG	5 cut(s)	484, 550, 612, 705, 771
BseMII	CTCAG	2 cut(s)	132, 138
BseXI	GCAGC	2 cut(s)	110, 133
BsgI	GTGCAG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	5 cut(s)	484, 550, 612, 705, 771
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	45, 151, 333
Bsp19I	CCATGG	1 cut(s)	22
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	133, 137
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	2 cut(s)	53, 328
BspTNI	GGTCTC	1 cut(s)	44
BsrFI	RCCGGY	4 cut(s)	484, 550, 612, 642
BssAI	RCCGGY	4 cut(s)	484, 550, 612, 642
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	45, 151, 333
BssT1I	CCWWGG	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	77, 342
Bst6I	CTCTTC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	124, 141
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	4 cut(s)	6, 409, 442, 508
BstKTI	GATC	3 cut(s)	48, 154, 336
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	3 cut(s)	45, 151, 333
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	110, 133
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	3 cut(s)	45, 151, 333
BstYI	RGATCY	3 cut(s)	45, 151, 333
BsuRI	GGCC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	4 cut(s)	6, 409, 442, 508
BtsIMutI	CAGTG	3 cut(s)	486, 552, 644
Cfr10I	RCCGGY	4 cut(s)	484, 550, 612, 642
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	179, 259
CviAII	CATG	3 cut(s)	23, 609, 659
CviQI	GTAC	2 cut(s)	179, 259
DdeI	CTNAG	2 cut(s)	124, 141
DpnI	GATC	3 cut(s)	47, 153, 335
DpnII	GATC	3 cut(s)	45, 151, 333
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	3 cut(s)	26, 612, 662
FaiI	YATR	8 cut(s)	24, 282, 436, 502, 568, 610, 630, 660
FalI	AAGNNNNNCTT	4 cut(s)	182, 214, 245, 277
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	3 cut(s)	22, 608, 658
Fnu4HI	GCNGC	2 cut(s)	99, 147
FokI	GGATG	3 cut(s)	396, 429, 495
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	99, 147
FspBI	CTAG	1 cut(s)	799
GluI	GCNGC	2 cut(s)	99, 147
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	26, 612, 662
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	1 cut(s)	355
HphI	GGTGA	2 cut(s)	89, 300
Hpy188I	TCNGA	3 cut(s)	127, 234, 740
Hpy188III	TCNNGA	5 cut(s)	43, 202, 265, 331, 346
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	2 cut(s)	77, 342
HpyCH4V	TGCA	4 cut(s)	4, 149, 176, 217
HpyF3I	CTNAG	2 cut(s)	124, 141
Hsp92II	CATG	3 cut(s)	26, 612, 662
Kzo9I	GATC	3 cut(s)	45, 151, 333
Lsp1109I	GCAGC	2 cut(s)	110, 133
MaeI	CTAG	1 cut(s)	799
MalI	GATC	3 cut(s)	47, 153, 335
MboI	GATC	3 cut(s)	45, 151, 333
MboII	GAAGA	6 cut(s)	97, 173, 190, 247, 389, 406
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	3 cut(s)	45, 151, 333
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	8 cut(s)	366, 422, 468, 534, 597, 689, 701, 742
MnlI	CCTC	5 cut(s)	88, 98, 136, 157, 674
MseI	TTAA	1 cut(s)	746
MunI	CAATTG	1 cut(s)	534
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	3 cut(s)	45, 151, 333
NlaIII	CATG	3 cut(s)	26, 612, 662
NlaIV	GGNNCC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	100, 148
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	3 cut(s)	45, 151, 333
RsaI	GTAC	2 cut(s)	180, 260
RsaNI	GTAC	2 cut(s)	179, 259
SaqAI	TTAA	1 cut(s)	746
SatI	GCNGC	2 cut(s)	99, 147
Sau3AI	GATC	3 cut(s)	45, 151, 333
Sau96I	GGNCC	1 cut(s)	107
ScaI	AGTACT	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	4 cut(s)	68, 225, 277, 388
SfcI	CTRYAG	1 cut(s)	147
Sse9I	AATT	8 cut(s)	366, 422, 468, 534, 597, 689, 701, 742
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	799
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	2 cut(s)	77, 342
TaqI	TCGA	1 cut(s)	93
TasI	AATT	8 cut(s)	366, 422, 468, 534, 597, 689, 701, 742
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	746
Tru9I	TTAA	1 cut(s)	746
TscAI	CASTG	3 cut(s)	486, 552, 644
TseI	GCWGC	2 cut(s)	98, 146
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	3 cut(s)	486, 552, 644
XapI	RAATTY	2 cut(s)	422, 742
XspI	CTAG	1 cut(s)	799
ZrmI	AGTACT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.