Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011590

Physical Location & Seq

Genomic Coordinates Reverse (-)

2818980 .. 2820323

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1034400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCAGATTTCTGTTGCTTTCCAAGGGGCTCTTCTGGGTCTCTGGTTCTGCTTCTTTGCTGCAAGCTTCTGCTATACCAATGGAGAGACCATTGAGGTAGCTAGAGAACAAGCAGCAGCCAAAGCTTTTTCAGAGTTGCAAAAAGCAGAAGCCGCAGAAGTCAATGAAGAAGAGAAATTTAAAGTGCTTCCACACAAGCCATTCTTCAAGAAGCCACCTCTCCCTAAGATTCCCATTGTAAAGAAGCCATTTCCACCAGAGCCCTTTTTCAAGAAGCCATTGCCACCCCACATCCCAATCTACAAGAAGCCACTCCCGCCACCAGTTCCGGTCTTCAAGATTCCTCCCTTTAAGAAGCCTGATTATCCGCCGGTTCCGGTTGTGGAAGTAAAGCCATTTCTGAAGAAGCCATTTCTTCCTCCACTTCCAAAATTCAAGAAGCCAATTCTACCACCTATTCCTGTTTACAAGAAGCCACTTCCTCCACCAATTCCAGTTTACAAGAAGCCGTTTCCCCATCCTGTTTTCAAGAAGCCGATTCCAACATTCAAGAAGCCGCCATTTCCTCCACATCCATTCCTTGGGAAGCCATTTCCTTCTATTGTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

204

Amino Acids

23.04

Weight (kDa)

9.98

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02540
malus_domestica	MD02G1292200.v1.1 MD02G1292400.v1.1 MD07G1034400.v1.1
prunus_persica	Prupe.2G030800_v2.0.a1 Prupe.2G031000_v2.0.a1
pyrus_communis	pycom02g24680 pycom02g24690 pycom07g02430
rosa_chinensis	RchiOBHm_Chr1g0321181
rosa_laevigata	RLG00000030433
rosa_multiflora	Rmu_co8413183.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433780 Rroxscaffold_4G00328030
rosa_rugosa	Rorug01G0031800
rosa_samantha	Rh1AG043700 Rh1BG041200 Rh1CG046200 Rh1DG050900
rosa_wichuraiana	Rw1G003840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	581
AciI	CCGC	4 cut(s)	153, 317, 368, 557
AcsI	RAATTY	2 cut(s)	176, 431
AcuI	CTGAAG	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	581
AgsI	TTSAA	6 cut(s)	208, 271, 337, 436, 529, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AluBI	AGCT	3 cut(s)	66, 101, 125
AluI	AGCT	3 cut(s)	66, 101, 125
Alw26I	GTCTC	2 cut(s)	44, 80
ApeKI	GCWGC	3 cut(s)	59, 113, 116
ApoI	RAATTY	2 cut(s)	176, 431
BanII	GRGCYC	2 cut(s)	31, 264
BbsI	GAAGAC	1 cut(s)	325
BbvI	GCAGC	3 cut(s)	46, 125, 128
BccI	CCATC	1 cut(s)	525
BceAI	ACGGC	1 cut(s)	493
BcoDI	GTCTC	2 cut(s)	44, 80
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	5 cut(s)	60, 114, 117, 153, 557
BlsI	GCNGC	5 cut(s)	61, 115, 118, 154, 558
BmiI	GGNNCC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	325
BsaI	GGTCTC	2 cut(s)	44, 80
BsaJI	CCNNGG	2 cut(s)	22, 580
BsaWI	WCCGGW	2 cut(s)	328, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	581
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	323, 494
Bse3DI	GCAATG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	22, 580
BseGI	GGATG	3 cut(s)	291, 517, 571
BseLI	CCNNNNNNNGG	1 cut(s)	581
BseMI	GCAATG	1 cut(s)	278
BseNI	ACTGG	2 cut(s)	323, 494
BseXI	GCAGC	3 cut(s)	46, 125, 128
BsiSI	CCGG	3 cut(s)	329, 371, 377
BslI	CCNNNNNNNGG	1 cut(s)	581
BsmAI	GTCTC	2 cut(s)	44, 80
Bso31I	GGTCTC	2 cut(s)	44, 80
Bsp1286I	GDGCHC	2 cut(s)	31, 264
BspACI	CCGC	4 cut(s)	153, 317, 368, 557
BspLI	GGNNCC	1 cut(s)	375
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	2 cut(s)	44, 80
BsrDI	GCAATG	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	323, 494
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	22, 580
BssT1I	CCWWGG	2 cut(s)	22, 580
Bst6I	CTCTTC	2 cut(s)	36, 165
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	3 cut(s)	291, 517, 571
BstMAI	GTCTC	2 cut(s)	44, 80
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 152, 316
BstV1I	GCAGC	3 cut(s)	46, 125, 128
BstV2I	GAAGAC	1 cut(s)	325
BtsCI	GGATG	3 cut(s)	291, 517, 571
Cac8I	GCNNGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	370
DdeI	CTNAG	1 cut(s)	225
DraI	TTTAAA	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	36, 165
EarI	CTCTTC	2 cut(s)	36, 165
EciI	GGCGGA	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	22, 580
Eco24I	GRGCYC	2 cut(s)	31, 264
Eco31I	GGTCTC	2 cut(s)	44, 80
Eco57I	CTGAAG	1 cut(s)	422
EcoT14I	CCWWGG	2 cut(s)	22, 580
EcoT38I	GRGCYC	2 cut(s)	31, 264
ErhI	CCWWGG	2 cut(s)	22, 580
FaiI	YATR	1 cut(s)	75
FalI	AAGNNNNNCTT	4 cut(s)	15, 47, 188, 220
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	5 cut(s)	60, 114, 117, 153, 557
FokI	GGATG	3 cut(s)	278, 504, 558
FriOI	GRGCYC	2 cut(s)	31, 264
Fsp4HI	GCNGC	5 cut(s)	60, 114, 117, 153, 557
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	5 cut(s)	60, 114, 117, 153, 557
HapII	CCGG	3 cut(s)	329, 371, 377
HindIII	AAGCTT	2 cut(s)	64, 123
HinfI	GANTC	3 cut(s)	229, 340, 538
HpaII	CCGG	3 cut(s)	329, 371, 377
Hpy166II	GTNNAC	2 cut(s)	466, 499
Hpy188I	TCNGA	2 cut(s)	133, 402
Hpy188III	TCNNGA	6 cut(s)	208, 271, 337, 436, 529, 550
Hpy8I	GTNNAC	2 cut(s)	466, 499
HpyAV	CCTTC	1 cut(s)	606
HpyCH4V	TGCA	3 cut(s)	4, 62, 139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 152, 316
HpyF3I	CTNAG	1 cut(s)	225
LguI	GCTCTTC	1 cut(s)	36
Lsp1109I	GCAGC	3 cut(s)	46, 125, 128
MaeI	CTAG	1 cut(s)	102
MboII	GAAGA	7 cut(s)	23, 179, 182, 196, 325, 407, 415
MhlI	GDGCHC	2 cut(s)	31, 264
MluCI	AATT	4 cut(s)	176, 431, 444, 489
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	6 cut(s)	88, 228, 354, 429, 492, 576
MseI	TTAA	2 cut(s)	180, 351
MspI	CCGG	3 cut(s)	329, 371, 377
MwoI	GCNNNNNNNGC	3 cut(s)	122, 152, 316
NlaIV	GGNNCC	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	229, 340, 538
PflMI	CCANNNNNTGG	1 cut(s)	581
PkrI	GCNGC	5 cut(s)	61, 115, 118, 154, 558
PspN4I	GGNNCC	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	180, 351
SatI	GCNGC	5 cut(s)	60, 114, 117, 153, 557
SduI	GDGCHC	2 cut(s)	31, 264
SetI	ASST	6 cut(s)	68, 99, 103, 127, 220, 457
Sse9I	AATT	4 cut(s)	176, 431, 444, 489
SsiI	CCGC	4 cut(s)	153, 317, 368, 557
SspMI	CTAG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	22, 580
TasI	AATT	4 cut(s)	176, 431, 444, 489
TauI	GCSGC	2 cut(s)	155, 559
TfiI	GAWTC	3 cut(s)	229, 340, 538
Tru1I	TTAA	2 cut(s)	180, 351
Tru9I	TTAA	2 cut(s)	180, 351
TseI	GCWGC	3 cut(s)	59, 113, 116
TspDTI	ATGAA	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	581
XapI	RAATTY	2 cut(s)	176, 431
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.