RLG00000030433

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011590
Physical Location & Seq
Forward (+)
61397925 .. 61399117
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030433

Sequence Viewer

Length: 987 bp
ATGCAGGTCCGTCCTGCTTTCCATGGGGTTCTACTGGGTCTCTGGATCTGCTTGTTTACTTCAAGCTTCTGCTACGGTGATGAGAAGACCATCGAGGCAGCCGGAGGGCCAAGCAAAGTCTTCTCAGAGTTGAAAACAACTGAGGCTGCAGACCTCAATGAAGAAGGAAAGTTTGCAGTACTACCACCAAAGCCGTTCTTCAAGAAACCACTTCTGCACAAGGTTCCCACTCTGAAGAAGCCATTTCCACAAAAGCCGTACTTCAAGAAACCACCTTTACATAAGATTCCCATTGTCAAAAAGCCATCACCACCATCTGCTCCTGTTTTCAAGATCCCACCGTTCAAGAAGCCGGTTCCTTCCCCAATTCCGCAAGAAGAAAAATCTTTTTTGAAGAAGCCATATTTCCATCCTATTCCAAAATTCAAAAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCACTTTTACCCCCGGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCAGTTTACAAGAAGCCAATTTTACCCCCAGTGCCAGTTTACAAGAAGCCAATTTTACCCCCGGTGCCTGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCAATTTTACCCCCGGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCAATTTTACCCCCGGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCAATTTTACCCCCAGTGCCGGTTTACAAGAAGCCATATTTCCATCCAGTTCCGGTTTACAAGAAGCCATGTCCTCCTCCACTTCCGGTTTACAAGAAGCCAATTTTCCCCCCAATTCCGGTTTACAAAAAACCATTTTTCCCCCCAGTTCCGATTTACAAGAAACCATTATTCCCTCCAATTCCAAAATTCAAGAAGCCATTTCCTCCGCATGTGGCTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

329

Amino Acids

37.76

Weight (kDa)

10.09

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 481, 580, 646, 712
AciI CCGC 2 cut(s) 371, 971
AclWI GGATC 2 cut(s) 53, 328
AcsI RAATTY 2 cut(s) 422, 950
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 2 cut(s) 180, 260
AfiI CCNNNNNNNGG 5 cut(s) 484, 649, 715, 781, 880
AgsI TTSAA 9 cut(s) 63, 133, 202, 265, 331, 346, 394, 427, 955
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 2 cut(s) 53, 328
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 2 cut(s) 98, 146
ApoI RAATTY 2 cut(s) 422, 950
AspS9I GGNCC 2 cut(s) 7, 107
AsuC2I CCSGG 4 cut(s) 479, 578, 644, 710
AsuHPI GGTGA 2 cut(s) 89, 300
AvaII GGWCC 1 cut(s) 7
BanI GGYRCC 4 cut(s) 481, 580, 646, 712
BbsI GAAGAC 2 cut(s) 92, 112
BbvI GCAGC 2 cut(s) 110, 133
BceAI ACGGC 2 cut(s) 178, 241
BcnI CCSGG 4 cut(s) 479, 578, 644, 710
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 1 cut(s) 985
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 2 cut(s) 99, 147
BlsI GCNGC 2 cut(s) 100, 148
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 4 cut(s) 479, 578, 644, 710
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 7, 107
BmiI GGNNCC 7 cut(s) 225, 357, 483, 582, 648, 714, 981
BmrFI CCNGG 4 cut(s) 479, 578, 644, 710
BmrI ACTGGG 4 cut(s) 44, 539, 770, 902
BmuI ACTGGG 4 cut(s) 44, 539, 770, 902
BpiI GAAGAC 2 cut(s) 92, 112
BpuMI CCSGG 4 cut(s) 479, 578, 644, 710
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 5 cut(s) 22, 477, 576, 642, 708
BsaWI WCCGGW 7 cut(s) 451, 616, 682, 748, 814, 847, 880
Bsc4I CCNNNNNNNGG 5 cut(s) 484, 649, 715, 781, 880
Bse118I RCCGGY 5 cut(s) 352, 484, 649, 715, 781
BseDI CCNNGG 5 cut(s) 22, 477, 576, 642, 708
BseGI GGATG 7 cut(s) 409, 442, 508, 607, 673, 739, 805
BseLI CCNNNNNNNGG 5 cut(s) 484, 649, 715, 781, 880
BseMII CTCAG 2 cut(s) 132, 138
BseRI GAGGAG 1 cut(s) 828
BseXI GCAGC 2 cut(s) 110, 133
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 109
BshNI GGYRCC 4 cut(s) 481, 580, 646, 712
BslI CCNNNNNNNGG 5 cut(s) 484, 649, 715, 781, 880
BsmAI GTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 45, 333
Bsp19I CCATGG 1 cut(s) 22
BspACI CCGC 2 cut(s) 371, 971
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 2 cut(s) 133, 137
BspLI GGNNCC 7 cut(s) 225, 357, 483, 582, 648, 714, 981
BspMAI CTGCAG 1 cut(s) 151
BspPI GGATC 2 cut(s) 53, 328
BspT107I GGYRCC 4 cut(s) 481, 580, 646, 712
BspTNI GGTCTC 1 cut(s) 44
BsrFI RCCGGY 5 cut(s) 352, 484, 649, 715, 781
BssAI RCCGGY 5 cut(s) 352, 484, 649, 715, 781
BssECI CCNNGG 5 cut(s) 22, 477, 576, 642, 708
BssMI GATC 2 cut(s) 45, 333
BssT1I CCWWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 77, 342
BstDEI CTNAG 2 cut(s) 124, 141
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 7 cut(s) 409, 442, 508, 607, 673, 739, 805
BstKTI GATC 2 cut(s) 48, 336
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 2 cut(s) 45, 333
BstNSI RCATGY 1 cut(s) 977
BstSCI CCNGG 4 cut(s) 477, 576, 642, 708
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 110, 133
BstV2I GAAGAC 2 cut(s) 92, 112
BstX2I RGATCY 2 cut(s) 45, 333
BstYI RGATCY 2 cut(s) 45, 333
BsuRI GGCC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 22
BtsCI GGATG 7 cut(s) 409, 442, 508, 607, 673, 739, 805
BtsIMutI CAGTG 2 cut(s) 552, 783
Cfr10I RCCGGY 5 cut(s) 352, 484, 649, 715, 781
Cfr13I GGNCC 2 cut(s) 7, 107
Csp6I GTAC 2 cut(s) 179, 259
CviAII CATG 3 cut(s) 23, 831, 974
CviQI GTAC 2 cut(s) 179, 259
DdeI CTNAG 2 cut(s) 124, 141
DpnI GATC 2 cut(s) 47, 335
DpnII GATC 2 cut(s) 45, 333
Eco130I CCWWGG 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 3 cut(s) 26, 834, 977
FalI AAGNNNNNCTT 4 cut(s) 182, 214, 245, 277
FatI CATG 3 cut(s) 22, 830, 973
Fnu4HI GCNGC 2 cut(s) 99, 147
FokI GGATG 7 cut(s) 396, 429, 495, 594, 660, 726, 792
Fsp4HI GCNGC 2 cut(s) 99, 147
FspBI CTAG 1 cut(s) 985
GluI GCNGC 2 cut(s) 99, 147
HaeIII GGCC 1 cut(s) 109
Hin1II CATG 3 cut(s) 26, 834, 977
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 1 cut(s) 286
HphI GGTGA 2 cut(s) 89, 300
Hpy188I TCNGA 3 cut(s) 127, 234, 915
Hpy188III TCNNGA 6 cut(s) 43, 202, 265, 331, 346, 955
HpyAV CCTTC 2 cut(s) 158, 369
HpyCH4III ACNGT 2 cut(s) 77, 342
HpyCH4V TGCA 4 cut(s) 4, 149, 176, 217
HpyF3I CTNAG 2 cut(s) 124, 141
Hsp92II CATG 3 cut(s) 26, 834, 977
Kzo9I GATC 2 cut(s) 45, 333
LmnI GCTCC 2 cut(s) 325, 985
Lsp1109I GCAGC 2 cut(s) 110, 133
MaeI CTAG 1 cut(s) 985
MalI GATC 2 cut(s) 47, 335
MboI GATC 2 cut(s) 45, 333
MboII GAAGA 7 cut(s) 97, 112, 173, 190, 247, 389, 406
MflI RGATCY 2 cut(s) 45, 333
MnlI CCTC 8 cut(s) 88, 98, 136, 164, 846, 849, 948, 978
MspR9I CCNGG 4 cut(s) 479, 578, 644, 710
NciI CCSGG 4 cut(s) 479, 578, 644, 710
NcoI CCATGG 1 cut(s) 22
NdeII GATC 2 cut(s) 45, 333
NlaIII CATG 3 cut(s) 26, 834, 977
NlaIV GGNNCC 7 cut(s) 225, 357, 483, 582, 648, 714, 981
NspI RCATGY 1 cut(s) 977
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 2 cut(s) 100, 148
PspN4I GGNNCC 7 cut(s) 225, 357, 483, 582, 648, 714, 981
PspPI GGNCC 2 cut(s) 7, 107
PstI CTGCAG 1 cut(s) 151
PsuI RGATCY 2 cut(s) 45, 333
RsaI GTAC 2 cut(s) 180, 260
RsaNI GTAC 2 cut(s) 179, 259
SatI GCNGC 2 cut(s) 99, 147
Sau3AI GATC 2 cut(s) 45, 333
Sau96I GGNCC 2 cut(s) 7, 107
ScaI AGTACT 1 cut(s) 180
ScrFI CCNGG 4 cut(s) 479, 578, 644, 710
SetI ASST 5 cut(s) 9, 68, 156, 225, 277
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 1 cut(s) 7
SsiI CCGC 2 cut(s) 371, 971
SspMI CTAG 1 cut(s) 985
StyD4I CCNGG 4 cut(s) 477, 576, 642, 708
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 77, 342
TaqI TCGA 1 cut(s) 93
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 1 cut(s) 286
TscAI CASTG 2 cut(s) 552, 783
TseI GCWGC 2 cut(s) 98, 146
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 2 cut(s) 552, 783
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 2 cut(s) 422, 950
XceI RCATGY 1 cut(s) 977
XspI CTAG 1 cut(s) 985
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.