pycom02g24690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011590
Physical Location & Seq
Forward (+)
22814104 .. 22815240
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g24690.2

Sequence Viewer

Length: 732 bp
ATGCAGATTCGTGTTGCTTTTCAAGGGGCTCTTCTGGGTCTCTGGTTCTGCTTCTTTGCTGTAAGCTTCTGCTATAGCAATGGAGAGACCATTGAGGTAACCGGTGAACAAGCTGCAGCCAAAGCTTTTTCAGAGTTGCAAAGAGCAGAAGCTGCAGAAGTCCATGAAGAAGAGAAAATTGTACCTGGATATCAAGGCATTGATAATTCTCCCTGGGGTCCTCCATCGGTTCCGGTTGTGGAAGAAAAGCCATTTCTGAAGAAGCCAATTTTCCATCCACTTCCAAAATTCAAGAAGCCACTTCCGCCACCAATTCCAGTTTACAAGAAGCCACTTCCTCCACCAATTCCAGTTTACAAGAAGCCACTTCCTCCACCAGTCCCAGTTTACAAGAAGCCACTTCCTCCACTTCCAAAATTCAAGAAGCCACTTCCTCCACCAATTCCAGTTTACAAGAAGCCACTTCCTCCACCAGTTCCAATTTACAAGAAGCCACTTCCTCCACCAATTCCAATTTACAAGAAGCCACTTCCTCCACCAATTCCAGTTTACAAGAAGCCACTTCCTCCACCAATTCCAATTTACAAGAAGCCACTTCCTCCACCAATTCCAGTTTACAAGAAGCCACTTCCTCCACCAATTCCAGTTTACAAGAAGCCACTTCCAAAATTCAAGAAGCCATTTCCTCCACATCCATTCCTTGGGAAGCCGGTACCTCCCACTGTTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0030312 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

244

Amino Acids

27.17

Weight (kDa)

9.95

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 712
AccB1I GGYRCC 1 cut(s) 712
AccB7I CCANNNNNTGG 1 cut(s) 701
AciI CCGC 1 cut(s) 305
AcsI RAATTY 3 cut(s) 287, 416, 668
AcuI CTGAAG 1 cut(s) 278
AfaI GTAC 2 cut(s) 183, 714
AfiI CCNNNNNNNGG 1 cut(s) 701
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 4 cut(s) 23, 292, 421, 673
AjnI CCWGG 2 cut(s) 184, 212
AluBI AGCT 4 cut(s) 66, 113, 125, 152
AluI AGCT 4 cut(s) 66, 113, 125, 152
Alw26I GTCTC 2 cut(s) 44, 80
AlwNI CAGNNNCTG 1 cut(s) 152
ApeKI GCWGC 3 cut(s) 113, 116, 152
ApoI RAATTY 3 cut(s) 287, 416, 668
AsiGI ACCGGT 1 cut(s) 101
Asp718I GGTACC 1 cut(s) 712
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 116
AvaII GGWCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 712
BanII GRGCYC 1 cut(s) 31
BbvI GCAGC 3 cut(s) 100, 128, 139
BccI CCATC 2 cut(s) 232, 282
BciT130I CCWGG 2 cut(s) 186, 214
BcoDI GTCTC 2 cut(s) 44, 80
BfmI CTRYAG 3 cut(s) 73, 114, 153
BisI GCNGC 3 cut(s) 114, 117, 153
BlsI GCNGC 3 cut(s) 115, 118, 154
Bme1390I CCNGG 2 cut(s) 186, 214
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 3 cut(s) 219, 231, 714
BmrFI CCNGG 2 cut(s) 186, 214
BmrI ACTGGG 1 cut(s) 377
BmuI ACTGGG 1 cut(s) 377
BsaI GGTCTC 2 cut(s) 44, 80
BsaJI CCNNGG 3 cut(s) 212, 213, 700
BsaWI WCCGGW 2 cut(s) 101, 232
Bsc4I CCNNNNNNNGG 1 cut(s) 701
Bse118I RCCGGY 2 cut(s) 101, 709
Bse1I ACTGG 9 cut(s) 317, 350, 377, 383, 446, 473, 545, 611, 644
Bse3DI GCAATG 1 cut(s) 85
BseBI CCWGG 2 cut(s) 186, 214
BseDI CCNNGG 3 cut(s) 212, 213, 700
BseGI GGATG 2 cut(s) 274, 691
BseLI CCNNNNNNNGG 1 cut(s) 701
BseMI GCAATG 1 cut(s) 85
BseNI ACTGG 9 cut(s) 317, 350, 377, 383, 446, 473, 545, 611, 644
BseXI GCAGC 3 cut(s) 100, 128, 139
BshNI GGYRCC 1 cut(s) 712
BshTI ACCGGT 1 cut(s) 101
BsiSI CCGG 3 cut(s) 102, 233, 710
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 701
BsmAI GTCTC 2 cut(s) 44, 80
BsmFI GGGAC 1 cut(s) 365
Bso31I GGTCTC 2 cut(s) 44, 80
Bsp1286I GDGCHC 1 cut(s) 31
BspACI CCGC 1 cut(s) 305
BspLI GGNNCC 3 cut(s) 219, 231, 714
BspMAI CTGCAG 2 cut(s) 118, 157
BspQI GCTCTTC 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 712
BspTNI GGTCTC 2 cut(s) 44, 80
BsrDI GCAATG 1 cut(s) 85
BsrFI RCCGGY 2 cut(s) 101, 709
BsrI ACTGG 9 cut(s) 317, 350, 377, 383, 446, 473, 545, 611, 644
BssAI RCCGGY 2 cut(s) 101, 709
BssECI CCNNGG 3 cut(s) 212, 213, 700
BssT1I CCWWGG 1 cut(s) 700
Bst2UI CCWGG 2 cut(s) 186, 214
Bst4CI ACNGT 1 cut(s) 724
Bst6I CTCTTC 2 cut(s) 36, 165
BstAPI GCANNNNNTGC 1 cut(s) 152
BstEII GGTNACC 1 cut(s) 97
BstF5I GGATG 2 cut(s) 274, 691
BstMAI GTCTC 2 cut(s) 44, 80
BstMWI GCNNNNNNNGC 3 cut(s) 122, 152, 304
BstNI CCWGG 2 cut(s) 186, 214
BstPI GGTNACC 1 cut(s) 97
BstSCI CCNGG 2 cut(s) 184, 212
BstSFI CTRYAG 3 cut(s) 73, 114, 153
BstV1I GCAGC 3 cut(s) 100, 128, 139
BtsCI GGATG 2 cut(s) 274, 691
BtsIMutI CAGTG 1 cut(s) 720
CaiI CAGNNNCTG 1 cut(s) 152
Cfr10I RCCGGY 2 cut(s) 101, 709
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 182, 713
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 1 cut(s) 164
CviQI GTAC 2 cut(s) 182, 713
Eam1104I CTCTTC 2 cut(s) 36, 165
EarI CTCTTC 2 cut(s) 36, 165
EciI GGCGGA 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 700
Eco24I GRGCYC 1 cut(s) 31
Eco31I GGTCTC 2 cut(s) 44, 80
Eco32I GATATC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 278
Eco91I GGTNACC 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 184, 212
EcoRV GATATC 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 700
FaeI CATG 1 cut(s) 167
FaiI YATR 2 cut(s) 75, 165
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 114, 117, 153
FokI GGATG 2 cut(s) 261, 678
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 114, 117, 153
GluI GCNGC 3 cut(s) 114, 117, 153
HapII CCGG 3 cut(s) 102, 233, 710
Hin1II CATG 1 cut(s) 167
HindIII AAGCTT 2 cut(s) 64, 123
HinfI GANTC 1 cut(s) 7
HpaII CCGG 3 cut(s) 102, 233, 710
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 8 cut(s) 107, 322, 355, 388, 451, 550, 616, 649
Hpy188I TCNGA 2 cut(s) 133, 258
Hpy188III TCNNGA 3 cut(s) 292, 421, 673
Hpy8I GTNNAC 8 cut(s) 107, 322, 355, 388, 451, 550, 616, 649
HpyCH4III ACNGT 1 cut(s) 724
HpyCH4V TGCA 4 cut(s) 4, 116, 139, 155
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 152, 304
Hsp92II CATG 1 cut(s) 167
KpnI GGTACC 1 cut(s) 716
LguI GCTCTTC 1 cut(s) 36
Lsp1109I GCAGC 3 cut(s) 100, 128, 139
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 5 cut(s) 23, 179, 182, 254, 271
MhlI GDGCHC 1 cut(s) 31
MspI CCGG 3 cut(s) 102, 233, 710
MspR9I CCNGG 2 cut(s) 186, 214
MvaI CCWGG 2 cut(s) 186, 214
MwoI GCNNNNNNNGC 3 cut(s) 122, 152, 304
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 3 cut(s) 219, 231, 714
PasI CCCWGGG 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 701
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 3 cut(s) 115, 118, 154
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 184, 212
PspEI GGTNACC 1 cut(s) 97
PspGI CCWGG 2 cut(s) 184, 212
PspN4I GGNNCC 3 cut(s) 219, 231, 714
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PstI CTGCAG 2 cut(s) 118, 157
PstNI CAGNNNCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 183, 714
RsaNI GTAC 2 cut(s) 182, 713
SapI GCTCTTC 1 cut(s) 36
SatI GCNGC 3 cut(s) 114, 117, 153
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 186, 214
SduI GDGCHC 1 cut(s) 31
SetI ASST 7 cut(s) 68, 99, 115, 127, 154, 187, 718
SfcI CTRYAG 3 cut(s) 73, 114, 153
SinI GGWCC 1 cut(s) 218
SsiI CCGC 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 184, 212
StyI CCWWGG 1 cut(s) 700
TaaI ACNGT 1 cut(s) 724
TfiI GAWTC 1 cut(s) 7
TscAI CASTG 1 cut(s) 727
TseI GCWGC 3 cut(s) 113, 116, 152
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 1 cut(s) 727
Van91I CCANNNNNTGG 1 cut(s) 701
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 3 cut(s) 287, 416, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.