Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009291

Physical Location & Seq

Genomic Coordinates Forward (+)

3591157 .. 3597096

Gene Structure 5940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03231.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCAGCGAAGCAAGTAGAGGGCTTGAGCTTGGAGCAGAGGCACGGCAAGGACCGTGTCCGGGTCGCCAGGGTCTGGCGGAACACACCCGACGGACGACATGTCGTCGTCGAATGGAGCGTCAGCATCAGCCTCCTCTCTGACTGCCTCGCCGCTTATACCCGCGACGACAACTCCGATATCGTCGCCACCGACACCATGAAGAACACCGTGTATGCTAAGGCGAAGGAGTGTGTGGAGCAAGTTTCGGTGGAGGATTTCGCAATTCTACTTGCGAAACACTTCACATCTCTTTACCAGCAGGTCACGTGTGCCATTGTTAACATTGTGGAGAAGCCATGGGAGCGTGTATCTGTAAATGGTGAACCTCATGAACATGGTTTCAAATTGGGATCGGAGAGGCACACAACAGAAGTAATTTTGGAGAAGTCTGGTGCATTAAGGGTGACATCTGGTATTGAAAGACTAGCTGTATTGAAGACAACAAAGTCCGGTTTTGAGGGGTTCATTAGGGACAAATACACAGCTCTTCCTGACACACGAGAGAGGATTCTGGCTACAGAAATCACTGCATCATGGAGGTATCCATATGAATCTGTTATTAGCATCCCTCAAAAGCCACTATACTTCACGGAAAAATACTTGAATGTGAAAAAAGTTCTGATCGACACTTTCTATGGTCCTCCGAAAGAAGGAAAATACAGCCCATCTGTGCAAAGCACTCTCTATGATATGGCAAAGACTGTACTCAAGAGTATTCCTGACATAACAGCAGTTCAATTGAAAATGCCAAATCTCCATTTCTTACCTGTTAACATCTCAAGCAAGGATGGTCCTATTGTGAAGTTTGACGATGATGTTTATCTGCCAACAGATGAACCACATGGATCAATACAAGCTACCTTAAGCCGTTTATGGTCAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004846 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016491 GO:0016661 GO:0016663 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko01100 ko01120 map00230 map00232 map01100 map01120

Pfam Domains

Protein Families

Uricase

Protein Analysis

310

Amino Acids

34.88

Weight (kDa)

7.71

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Uricase	PF01014	14 - 139	1.7e-22	Uricase
Uricase	PF01014	149 - 276	8.1e-36	Uricase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26230
fragaria_vesca	FvH4_7g03231 FvH4_7g03231
malus_domestica	MD02G1258600.v1.1 MD07G1062200.v1.1
prunus_persica	Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1
pyrus_communis	pycom02g21980 pycom07g04770
rosa_chinensis	RchiOBHm_Chr1g0325281 RchiOBHm_Chr1g0325311
rosa_laevigata	RLG00000030147
rosa_multiflora	Rmu_sc0007742.1_g000034 Rmu_sc0020800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00324830
rosa_rugosa	Rorug01G0051200
rosa_samantha	Rh1AG066400 Rh1BG054500 Rh1CG067800 Rh1DG072600
rosa_wichuraiana	Rw1G005550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	487
Acc36I	ACCTGC	1 cut(s)	292
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccII	CGCG	1 cut(s)	165
AciI	CCGC	3 cut(s)	79, 153, 163
AclWI	GGATC	2 cut(s)	400, 895
AcvI	CACGTG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	747
AfiI	CCNNNNNNNGG	3 cut(s)	61, 75, 692
AflII	CTTAAG	1 cut(s)	904
AflIII	ACRYGT	2 cut(s)	100, 308
AgsI	TTSAA	6 cut(s)	385, 461, 478, 646, 779, 784
AhdI	GACNNNNNGTC	2 cut(s)	101, 104
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	4 cut(s)	30, 470, 527, 899
AluI	AGCT	4 cut(s)	30, 470, 527, 899
AlwI	GGATC	2 cut(s)	400, 895
AlwNI	CAGNNNCTG	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	3 cut(s)	52, 680, 833
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	374, 457
AvaII	GGWCC	3 cut(s)	52, 680, 833
BauI	CACGAG	1 cut(s)	540
BbrPI	CACGTG	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	715, 824
BceAI	ACGGC	2 cut(s)	61, 894
BciT130I	CCWGG	1 cut(s)	70
BciVI	GTATCC	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	62
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	558
BfrI	CTTAAG	1 cut(s)	904
BfuAI	ACCTGC	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	594
BisI	GCNGC	2 cut(s)	6, 153
BlsI	GCNGC	2 cut(s)	7, 154
Bme1390I	CCNGG	2 cut(s)	62, 70
Bme18I	GGWCC	3 cut(s)	52, 680, 833
BmeRI	GACNNNNNGTC	2 cut(s)	101, 104
BmgT120I	GGNCC	3 cut(s)	52, 680, 833
BmrFI	CCNGG	2 cut(s)	62, 70
BmsI	GCATC	3 cut(s)	135, 581, 615
BpiI	GAAGAC	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	3 cut(s)	46, 734, 805
BpuMI	CCSGG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	861
BsaJI	CCNNGG	2 cut(s)	69, 338
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 75, 692
Bse8I	GATNNNNATC	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	69, 338
BseGI	GGATG	2 cut(s)	606, 835
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	3 cut(s)	61, 75, 692
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	61, 492
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	3 cut(s)	61, 75, 692
BsmFI	GGGAC	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	392, 663, 887
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	3 cut(s)	79, 153, 163
BspFNI	CGCG	1 cut(s)	165
BspHI	TCATGA	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	400, 895
BspQI	GCTCTTC	1 cut(s)	534
BspTI	CTTAAG	1 cut(s)	904
BssECI	CCNNGG	2 cut(s)	69, 338
BssMI	GATC	3 cut(s)	392, 663, 887
BssSI	CACGAG	1 cut(s)	540
BssT1I	CCWWGG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	56, 211, 745
Bst6I	CTCTTC	1 cut(s)	534
BstAFI	CTTAAG	1 cut(s)	904
BstBAI	YACGTR	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	2 cut(s)	606, 835
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	3 cut(s)	395, 666, 890
BstMBI	GATC	3 cut(s)	392, 663, 887
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	2 cut(s)	60, 68
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	485
BsuI	GTATCC	1 cut(s)	594
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	606, 835
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	567
BveI	ACCTGC	1 cut(s)	292
CaiI	CAGNNNCTG	1 cut(s)	75
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	52, 680, 833
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	746
CviAII	CATG	7 cut(s)	101, 199, 339, 371, 377, 576, 884
CviQI	GTAC	1 cut(s)	746
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	3 cut(s)	394, 665, 889
DpnII	GATC	3 cut(s)	392, 663, 887
DrdI	GACNNNNNNGTC	1 cut(s)	487
DriI	GACNNNNNGTC	2 cut(s)	101, 104
DseDI	GACNNNNNNGTC	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	534
Eam1105I	GACNNNNNGTC	2 cut(s)	101, 104
EarI	CTCTTC	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	338
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	3 cut(s)	52, 680, 833
Eco72I	CACGTG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	7 cut(s)	104, 202, 342, 374, 380, 579, 887
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	7 cut(s)	100, 198, 338, 370, 376, 575, 883
FauI	CCCGC	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	6, 153
FokI	GGATG	2 cut(s)	593, 842
Fsp4HI	GCNGC	2 cut(s)	6, 153
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	2 cut(s)	6, 153
HapII	CCGG	2 cut(s)	61, 492
HgaI	GACGC	1 cut(s)	109
Hin1II	CATG	7 cut(s)	104, 202, 342, 374, 380, 579, 887
HincII	GTYRAC	2 cut(s)	322, 814
HindII	GTYRAC	2 cut(s)	322, 814
HinfI	GANTC	2 cut(s)	550, 593
HpaI	GTTAAC	2 cut(s)	322, 814
HpaII	CCGG	2 cut(s)	61, 492
HphI	GGTGA	2 cut(s)	374, 457
Hpy166II	GTNNAC	3 cut(s)	322, 365, 814
Hpy188I	TCNGA	5 cut(s)	142, 178, 397, 663, 687
Hpy188III	TCNNGA	4 cut(s)	371, 533, 751, 761
Hpy8I	GTNNAC	3 cut(s)	322, 365, 814
Hpy99I	CGWCG	5 cut(s)	95, 110, 113, 170, 188
HpyAV	CCTTC	2 cut(s)	220, 686
HpyCH4III	ACNGT	3 cut(s)	56, 211, 745
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	3 cut(s)	437, 572, 715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	7 cut(s)	104, 202, 342, 374, 380, 579, 887
KspAI	GTTAAC	2 cut(s)	322, 814
Kzo9I	GATC	3 cut(s)	392, 663, 887
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	4 cut(s)	34, 117, 238, 343
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	3 cut(s)	135, 581, 615
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	304, 445
MalI	GATC	3 cut(s)	394, 665, 889
MboI	GATC	3 cut(s)	392, 663, 887
MboII	GAAGA	3 cut(s)	214, 490, 521
MfeI	CAATTG	1 cut(s)	779
MluCI	AATT	4 cut(s)	264, 386, 417, 779
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	4 cut(s)	321, 440, 813, 905
MslI	CAYNNNNRTG	1 cut(s)	375
MspCI	CTTAAG	1 cut(s)	904
MspI	CCGG	2 cut(s)	61, 492
MspR9I	CCNGG	2 cut(s)	62, 70
MunI	CAATTG	1 cut(s)	779
MvaI	CCWGG	1 cut(s)	70
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	343
NciI	CCSGG	1 cut(s)	62
NcoI	CCATGG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	3 cut(s)	392, 663, 887
NlaIII	CATG	7 cut(s)	104, 202, 342, 374, 380, 579, 887
NmuCI	GTSAC	2 cut(s)	304, 445
NspI	RCATGY	1 cut(s)	104
PagI	TCATGA	1 cut(s)	370
PciI	ACATGT	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 174, 189
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	550, 593
PflFI	GACNNNGTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	7, 154
PmaCI	CACGTG	1 cut(s)	309
PmlI	CACGTG	1 cut(s)	309
Ppu21I	YACGTR	1 cut(s)	309
PscI	ACATGT	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	68
PspCI	CACGTG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	68
PspPI	GGNCC	3 cut(s)	52, 680, 833
PstNI	CAGNNNCTG	1 cut(s)	75
PsyI	GACNNNGTC	1 cut(s)	56
RsaI	GTAC	1 cut(s)	747
RsaNI	GTAC	1 cut(s)	746
RseI	CAYNNNNRTG	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	4 cut(s)	321, 440, 813, 905
SatI	GCNGC	2 cut(s)	6, 153
Sau3AI	GATC	3 cut(s)	392, 663, 887
Sau96I	GGNCC	3 cut(s)	52, 680, 833
ScrFI	CCNGG	2 cut(s)	62, 70
SfaNI	GCATC	3 cut(s)	135, 581, 615
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	3 cut(s)	52, 680, 833
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	4 cut(s)	25, 749, 820, 904
SmoI	CTYRAG	4 cut(s)	25, 749, 820, 904
Sse9I	AATT	4 cut(s)	264, 386, 417, 779
SsiI	CCGC	3 cut(s)	79, 153, 163
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	2 cut(s)	60, 68
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	3 cut(s)	56, 211, 745
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	2 cut(s)	111, 666
TasI	AATT	4 cut(s)	264, 386, 417, 779
TatI	WGTACW	1 cut(s)	745
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	550, 593
Tru1I	TTAA	4 cut(s)	321, 440, 813, 905
Tru9I	TTAA	4 cut(s)	321, 440, 813, 905
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	2 cut(s)	304, 445
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	304, 445
TspDTI	ATGAA	5 cut(s)	215, 387, 496, 606, 891
TspGWI	ACGGA	2 cut(s)	108, 647
TspRI	CASTG	1 cut(s)	574
Tth111I	GACNNNGTC	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	75
Vha464I	CTTAAG	1 cut(s)	904
VpaK11BI	GGWCC	3 cut(s)	52, 680, 833
XceI	RCATGY	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.