Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009291

Physical Location & Seq

Genomic Coordinates Forward (+)

20109973 .. 20116625

Gene Structure 6653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g21980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCCAACAAAATAGAGGGGCTCAGCTTTGAGCAAAGGCATGGGAAGCAAAGGGTTAGGGTGGCCAGGGTCTGGCGGAACAACGACGGACGCCATTCCATCGTCGAATGGAACGTCGGCATCAGCCTCCTCTCCGACTGCGTCAATGCCTATACCCGCGGCGACAACTCTGATATCGTCGCTACCGATACCATGAAGAACACTGTATATGTAAAGGCAAAGGAATGTAAAGAAGAACTTTCAGTGGAGGAATTTGCAGTTCGACTTGCAAAGCACTTCACATCGCTTTACCAGCAGGTCACTACTGCCATAGTAAAGATTGTGGAGAAGCCATGGGAGCGTGCATATGTAGATGGTCAACCACACGAACATGGTTTCAAATTGGGATCTGAGAAGCATACAACAGAGGTAATTTTTGAGAAATCTGGTGCACTTTGGCTGACTTCTGGTATTGAAGGACTATCTCTGCTAAAGACAACACAGTCAGGTTTTGAGGGGTTTATTAGGGACAAATACACAGCTCTTCCTGACACACGAGAGAGGATACTGGCTACAGAAATCACTGCATCATGGAAGTACCAATATGAATCTATTTTTAGCATCCCTCAAAAACCGATGTACTTCACCGAAAGATACCTAAGTGTGAAAAAAGCTCTGGCTGACACTTTCTATGGTCCTCCAAAGGAAGGAGTGTACAGCCCGTCCATCCAAAGCACTCTGTTTCACATGGCAAAGACTGTTCTCAAGGGGTTTCCTGACATAGCAGCAGTACAACTGAAAATGCCAAATATCCATTTCTTACCTGTTAATCTATCTAGCAAGGATAATACCATTGTGAAGTTTGAGGACGATGTTTATCTCCCAACAGATGAACCACACGGATCAATCGAAGCTACTCTAAGCCGTTTCTGGTCAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004846 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016491 GO:0016661 GO:0016663 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko01100 ko01120 map00230 map00232 map01100 map01120

Pfam Domains

Protein Families

Uricase

Protein Analysis

308

Amino Acids

34.97

Weight (kDa)

7.75

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26230
fragaria_vesca	FvH4_7g03231 FvH4_7g03231
malus_domestica	MD02G1258600.v1.1 MD07G1062200.v1.1
prunus_persica	Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1
pyrus_communis	pycom02g21980 pycom07g04770
rosa_chinensis	RchiOBHm_Chr1g0325281 RchiOBHm_Chr1g0325311
rosa_laevigata	RLG00000030147
rosa_multiflora	Rmu_sc0007742.1_g000034 Rmu_sc0020800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00324830
rosa_rugosa	Rorug01G0051200
rosa_samantha	Rh1AG066400 Rh1BG054500 Rh1CG067800 Rh1DG072600
rosa_wichuraiana	Rw1G005550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	481
Acc36I	ACCTGC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	72
AccII	CGCG	1 cut(s)	159
AciI	CCGC	3 cut(s)	76, 157, 159
AclWI	GGATC	2 cut(s)	394, 889
AcoI	YGGCCR	2 cut(s)	3, 63
AcsI	RAATTY	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	4 cut(s)	578, 620, 695, 771
AfiI	CCNNNNNNNGG	2 cut(s)	72, 686
AgsI	TTSAA	2 cut(s)	379, 455
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	4 cut(s)	27, 521, 653, 893
AluI	AGCT	4 cut(s)	27, 521, 653, 893
Alw21I	GWGCWC	1 cut(s)	433
Alw44I	GTGCAC	1 cut(s)	429
AlwI	GGATC	2 cut(s)	394, 889
AlwNI	CAGNNNCTG	1 cut(s)	72
AoxI	GGCC	2 cut(s)	3, 63
ApaLI	GTGCAC	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	764
ApoI	RAATTY	1 cut(s)	251
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AspS9I	GGNCC	1 cut(s)	674
AsuHPI	GGTGA	1 cut(s)	616
AvaII	GGWCC	1 cut(s)	674
BaeGI	GKGCMC	1 cut(s)	433
BaeI	ACNNNNGTAYC	2 cut(s)	625, 658
BalI	TGGCCA	2 cut(s)	5, 65
BanII	GRGCYC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	776
BccI	CCATC	3 cut(s)	107, 347, 713
BceAI	ACGGC	1 cut(s)	888
BciT130I	CCWGG	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	537
BfaI	CTAG	1 cut(s)	816
BfmI	CTRYAG	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	286
BfuI	GTATCC	1 cut(s)	537
BisI	GCNGC	2 cut(s)	160, 765
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	2 cut(s)	161, 766
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	674
BmgT120I	GGNCC	1 cut(s)	674
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	3 cut(s)	129, 575, 609
Bpu1102I	GCTNAGC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	728
BsaBI	GATNNNNATC	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	91
BsaJI	CCNNGG	3 cut(s)	66, 157, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 686
Bse1I	ACTGG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	3 cut(s)	66, 157, 332
BseGI	GGATG	2 cut(s)	600, 705
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	2 cut(s)	72, 686
BseMII	CTCAG	2 cut(s)	37, 381
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	776
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	5, 65
BsiHKAI	GWGCWC	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	72, 686
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	2 cut(s)	5, 65
Bsp1286I	GDGCHC	2 cut(s)	24, 433
Bsp1407I	TGTACA	1 cut(s)	693
Bsp143I	GATC	2 cut(s)	386, 881
Bsp1720I	GCTNAGC	1 cut(s)	23
Bsp19I	CCATGG	1 cut(s)	332
BspACI	CCGC	3 cut(s)	76, 157, 159
BspANI	GGCC	2 cut(s)	5, 65
BspCNI	CTCAG	2 cut(s)	36, 382
BspFNI	CGCG	1 cut(s)	159
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	394, 889
BspQI	GCTCTTC	1 cut(s)	528
BsrGI	TGTACA	1 cut(s)	693
BsrI	ACTGG	1 cut(s)	552
BssECI	CCNNGG	3 cut(s)	66, 157, 332
BssMI	GATC	2 cut(s)	386, 881
BssNI	GRCGYC	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	1 cut(s)	332
Bst2BI	CACGAG	1 cut(s)	534
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	3 cut(s)	205, 483, 739
Bst6I	CTCTTC	1 cut(s)	528
BstACI	GRCGYC	1 cut(s)	91
BstAUI	TGTACA	1 cut(s)	693
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	4 cut(s)	23, 390, 638, 899
BstDSI	CCRYGG	2 cut(s)	157, 332
BstF5I	GGATG	2 cut(s)	600, 705
BstFNI	CGCG	1 cut(s)	159
BstKTI	GATC	2 cut(s)	389, 884
BstMBI	GATC	2 cut(s)	386, 881
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 292, 337
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	552
BstSLI	GKGCMC	1 cut(s)	433
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	776
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuI	GTATCC	1 cut(s)	537
BsuRI	GGCC	2 cut(s)	5, 65
BtgI	CCRYGG	2 cut(s)	157, 332
BtgZI	GCGATG	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	600, 705
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	3 cut(s)	201, 249, 561
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	674
Cfr42I	CCGCGG	1 cut(s)	160
CseI	GACGC	2 cut(s)	99, 130
Csp6I	GTAC	4 cut(s)	577, 619, 694, 770
CviAII	CATG	6 cut(s)	41, 193, 333, 371, 570, 727
CviQI	GTAC	4 cut(s)	577, 619, 694, 770
DdeI	CTNAG	4 cut(s)	23, 390, 638, 899
DpnI	GATC	2 cut(s)	388, 883
DpnII	GATC	2 cut(s)	386, 881
DrdI	GACNNNNNNGTC	1 cut(s)	481
DseDI	GACNNNNNNGTC	1 cut(s)	481
EaeI	YGGCCR	2 cut(s)	3, 63
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	65
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	332
FaeI	CATG	6 cut(s)	44, 196, 336, 374, 573, 730
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	6 cut(s)	40, 192, 332, 370, 569, 726
FauI	CCCGC	1 cut(s)	164
FauNDI	CATATG	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	160, 765
FokI	GGATG	2 cut(s)	587, 692
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	160, 765
FspBI	CTAG	1 cut(s)	816
GluI	GCNGC	2 cut(s)	160, 765
HaeIII	GGCC	2 cut(s)	5, 65
HgaI	GACGC	2 cut(s)	99, 130
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	6 cut(s)	44, 196, 336, 374, 573, 730
HincII	GTYRAC	1 cut(s)	359
HindII	GTYRAC	1 cut(s)	359
HinfI	GANTC	1 cut(s)	587
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	3 cut(s)	359, 431, 694
Hpy188I	TCNGA	3 cut(s)	136, 172, 391
Hpy188III	TCNNGA	2 cut(s)	527, 755
Hpy8I	GTNNAC	3 cut(s)	359, 431, 694
Hpy99I	CGWCG	4 cut(s)	89, 107, 119, 182
HpyAV	CCTTC	2 cut(s)	449, 680
HpyCH4III	ACNGT	3 cut(s)	205, 483, 739
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	257, 269, 344, 431, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 292, 337
HpyF3I	CTNAG	4 cut(s)	23, 390, 638, 899
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	6 cut(s)	44, 196, 336, 374, 573, 730
KspI	CCGCGG	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	386, 881
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	1 cut(s)	776
LweI	GCATC	3 cut(s)	129, 575, 609
MaeI	CTAG	1 cut(s)	816
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	2 cut(s)	388, 883
MboI	GATC	2 cut(s)	386, 881
MboII	GAAGA	3 cut(s)	208, 245, 515
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	2 cut(s)	24, 433
MlsI	TGGCCA	2 cut(s)	5, 65
MluCI	AATT	3 cut(s)	251, 380, 411
MluNI	TGGCCA	2 cut(s)	5, 65
MmeI	TCCRAC	1 cut(s)	159
Mox20I	TGGCCA	2 cut(s)	5, 65
MscI	TGGCCA	2 cut(s)	5, 65
MseI	TTAA	1 cut(s)	807
MslI	CAYNNNNRTG	1 cut(s)	369
Msp20I	TGGCCA	2 cut(s)	5, 65
MspA1I	CMGCKG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	46, 292, 337
NcoI	CCATGG	1 cut(s)	332
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	2 cut(s)	386, 881
NlaIII	CATG	6 cut(s)	44, 196, 336, 374, 573, 730
NmuCI	GTSAC	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 183, 885
PfeI	GAWTC	1 cut(s)	587
PflFI	GACNNNGTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	161, 766
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	674
PstNI	CAGNNNCTG	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	386
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	4 cut(s)	578, 620, 695, 771
RsaNI	GTAC	4 cut(s)	577, 619, 694, 770
RseI	CAYNNNNRTG	1 cut(s)	369
SacII	CCGCGG	1 cut(s)	160
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	1 cut(s)	807
SatI	GCNGC	2 cut(s)	160, 765
Sau3AI	GATC	2 cut(s)	386, 881
Sau96I	GGNCC	1 cut(s)	674
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	24, 433
SfaNI	GCATC	3 cut(s)	129, 575, 609
SfcI	CTRYAG	1 cut(s)	552
Sfr303I	CCGCGG	1 cut(s)	160
SgrBI	CCGCGG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	674
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
Sse9I	AATT	3 cut(s)	251, 380, 411
SsiI	CCGC	3 cut(s)	76, 157, 159
SspMI	CTAG	1 cut(s)	816
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	332
TaaI	ACNGT	3 cut(s)	205, 483, 739
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	3 cut(s)	105, 262, 888
TasI	AATT	3 cut(s)	251, 380, 411
TatI	WGTACW	3 cut(s)	618, 693, 769
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TscAI	CASTG	3 cut(s)	208, 249, 568
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	764
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	209, 600, 885
TspGWI	ACGGA	2 cut(s)	102, 894
TspRI	CASTG	3 cut(s)	208, 249, 568
Tth111I	GACNNNGTC	1 cut(s)	140
Van91I	CCANNNNNTGG	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	674
XapI	RAATTY	1 cut(s)	251
XspI	CTAG	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.