Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009291

Physical Location & Seq

Genomic Coordinates Forward (+)

11158426 .. 11164092

Gene Structure 5667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG066400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGATGGGGAAGCAAACAGAGGGTGGGTTCAAGTTGGAGCAGAGGCACGGCAAGGCTCGGGTCAGGGTCGCCCGGGTTTGGCGGAACAAACCCGACGGACGACATGTCATCGTCGAATGGTGCGTCAGCATCAGCCTCCTCTCTGATTGCCTCACCGCTTATACCCGCGGCGACAACTCCGATATCGTCGCCACTGACACCATGAAGAACACTGTGTATGCCAAGGCGAAGGAATGTGTGGAACAAGTTTCGGCTGAAGATTTCGCAGTTCTACTTGCGAAACACTTCACATCTCTTTACCAGCAGGTCACCTGTGCCATTGTAAACATTGTCGAGAAGCCATGGGAGCGTGTATCTGTAGATGGTGAAACACATGAACATGGTTTCAAATTAGGATCGGAGAGGCACACAACAGAAGTAATTTTAGAGAAGTCTGGTGCATTAAGGATGACTTCTGGTATTGAAGGACTGGCTGTACTGAAGACAACAAAGTCAGGTTTTGAGGGGTTTATTAGGGACAAATACACAGCTCTTCCTGACACGCGAGAGAGGATTCTGGCTACAGAAATCACTGCATCATGGAGGTATCTATATGAATCTATTTTTAGCATCCCTCAAAAGCCACTGTACTTCACAGAAAGATACTTGAATGTGAAAAAAGTTCTGACCGACACTTTCTATGGTCCTCCAAAAGAAGGAATATACAGCCCGTCTGTGCAAAGCACTCTTTATGACATGGCAAAGACTGTACTCAAAAGGTCTCTCTCTTCAAACAAATCTAACAAAAGCATGCATGCTTGCCTCTATACATGTTCCATTTTGCTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004846 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016491 GO:0016661 GO:0016663 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko01100 ko01120 map00230 map00232 map01100 map01120

Pfam Domains

Protein Families

Uricase

Protein Analysis

276

Amino Acids

31.2

Weight (kDa)

8.99

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Uricase	PF01014	15 - 140	1.3e-21	Uricase
Uricase	PF01014	151 - 253	1e-27	Uricase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26230
fragaria_vesca	FvH4_7g03231 FvH4_7g03231
malus_domestica	MD02G1258600.v1.1 MD07G1062200.v1.1
prunus_persica	Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1
pyrus_communis	pycom02g21980 pycom07g04770
rosa_chinensis	RchiOBHm_Chr1g0325281 RchiOBHm_Chr1g0325311
rosa_laevigata	RLG00000030147
rosa_multiflora	Rmu_sc0007742.1_g000034 Rmu_sc0020800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00324830
rosa_rugosa	Rorug01G0051200
rosa_samantha	Rh1AG066400 Rh1BG054500 Rh1CG067800 Rh1DG072600
rosa_wichuraiana	Rw1G005550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	295
AccII	CGCG	2 cut(s)	168, 544
AciI	CCGC	4 cut(s)	82, 156, 166, 168
AclWI	GGATC	1 cut(s)	403
AcuI	CTGAAG	2 cut(s)	276, 500
AfaI	GTAC	3 cut(s)	477, 629, 750
AfiI	CCNNNNNNNGG	2 cut(s)	78, 695
AflIII	ACRYGT	2 cut(s)	103, 809
AgsI	TTSAA	5 cut(s)	31, 388, 464, 649, 771
AhdI	GACNNNNNGTC	1 cut(s)	104
AluBI	AGCT	1 cut(s)	530
AluI	AGCT	1 cut(s)	530
Alw26I	GTCTC	1 cut(s)	765
AlwI	GGATC	1 cut(s)	403
Ama87I	CYCGRG	2 cut(s)	57, 72
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
Asp700I	GAANNNNTTC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	683
AsuC2I	CCSGG	2 cut(s)	73, 74
AsuHPI	GGTGA	3 cut(s)	145, 301, 377
AvaI	CYCGRG	2 cut(s)	57, 72
AvaII	GGWCC	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	488
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	64
BcnI	CCSGG	2 cut(s)	73, 74
BcoDI	GTCTC	1 cut(s)	765
BfmI	CTRYAG	2 cut(s)	357, 561
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	73, 74
Bme18I	GGWCC	1 cut(s)	683
BmeRI	GACNNNNNGTC	1 cut(s)	104
BmeT110I	CYCGRG	2 cut(s)	57, 72
BmgT120I	GGNCC	1 cut(s)	683
BmrFI	CCNGG	2 cut(s)	73, 74
BmsI	GCATC	3 cut(s)	138, 584, 618
BpiI	GAAGAC	1 cut(s)	488
BpuMI	CCSGG	2 cut(s)	73, 74
BsaI	GGTCTC	1 cut(s)	765
BsaJI	CCNNGG	4 cut(s)	72, 166, 222, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 695
Bse1I	ACTGG	1 cut(s)	474
BseDI	CCNNGG	4 cut(s)	72, 166, 222, 341
BseGI	GGATG	2 cut(s)	453, 609
BseLI	CCNNNNNNNGG	2 cut(s)	78, 695
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	1 cut(s)	128
Bsh1236I	CGCG	2 cut(s)	168, 544
BsiHKCI	CYCGRG	2 cut(s)	57, 72
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	530
BslI	CCNNNNNNNGG	2 cut(s)	78, 695
BsmAI	GTCTC	1 cut(s)	765
BsmFI	GGGAC	1 cut(s)	530
Bso31I	GGTCTC	1 cut(s)	765
BsoBI	CYCGRG	2 cut(s)	57, 72
Bsp143I	GATC	1 cut(s)	395
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	4 cut(s)	82, 156, 166, 168
BspFNI	CGCG	2 cut(s)	168, 544
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	403
BspQI	GCTCTTC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	765
BsrI	ACTGG	1 cut(s)	474
BssECI	CCNNGG	4 cut(s)	72, 166, 222, 341
BssMI	GATC	1 cut(s)	395
BssT1I	CCWWGG	2 cut(s)	222, 341
Bst4CI	ACNGT	3 cut(s)	214, 627, 748
Bst6I	CTCTTC	2 cut(s)	537, 772
BstC8I	GCNNGC	3 cut(s)	791, 795, 799
BstDSI	CCRYGG	2 cut(s)	166, 341
BstEII	GGTNACC	1 cut(s)	307
BstF5I	GGATG	2 cut(s)	453, 609
BstFNI	CGCG	2 cut(s)	168, 544
BstKTI	GATC	1 cut(s)	398
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNSI	RCATGY	4 cut(s)	107, 793, 797, 813
BstPI	GGTNACC	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	71, 72
BstSFI	CTRYAG	2 cut(s)	357, 561
BstUI	CGCG	2 cut(s)	168, 544
BstV2I	GAAGAC	1 cut(s)	488
BtgI	CCRYGG	2 cut(s)	166, 341
BtsCI	GGATG	2 cut(s)	453, 609
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	4 cut(s)	192, 210, 570, 623
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	3 cut(s)	791, 795, 799
Cfr13I	GGNCC	1 cut(s)	683
Cfr42I	CCGCGG	1 cut(s)	169
Cfr9I	CCCGGG	1 cut(s)	72
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	476, 628, 749
CviJI	RGCY	9 cut(s)	56, 135, 254, 340, 473, 530, 560, 622, 708
CviKI_1	RGCY	9 cut(s)	56, 135, 254, 340, 473, 530, 560, 622, 708
CviQI	GTAC	3 cut(s)	476, 628, 749
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
DrdI	GACNNNNNNGTC	1 cut(s)	490
DriI	GACNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	490
Eam1104I	CTCTTC	2 cut(s)	537, 772
Eam1105I	GACNNNNNGTC	1 cut(s)	104
EarI	CTCTTC	2 cut(s)	537, 772
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	222, 341
Eco31I	GGTCTC	1 cut(s)	765
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	2 cut(s)	276, 500
Eco88I	CYCGRG	2 cut(s)	57, 72
Eco91I	GGTNACC	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	222, 341
EcoT22I	ATGCAT	1 cut(s)	795
ErhI	CCWWGG	2 cut(s)	222, 341
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FaqI	GGGAC	1 cut(s)	530
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	2 cut(s)	460, 596
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	1 cut(s)	112
HinfI	GANTC	2 cut(s)	553, 596
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	3 cut(s)	145, 301, 377
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	145, 181, 400, 666
Hpy188III	TCNNGA	2 cut(s)	334, 536
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	3 cut(s)	98, 116, 191
HpyAV	CCTTC	3 cut(s)	223, 458, 689
HpyCH4III	ACNGT	3 cut(s)	214, 627, 748
HpyCH4V	TGCA	4 cut(s)	440, 575, 718, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	395
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	37, 346
LweI	GCATC	3 cut(s)	138, 584, 618
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MboII	GAAGA	5 cut(s)	217, 269, 493, 524, 759
MluCI	AATT	3 cut(s)	389, 420, 826
MmeI	TCCRAC	1 cut(s)	15
Mph1103I	ATGCAT	1 cut(s)	795
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	2 cut(s)	443, 829
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	73, 74
MvnI	CGCG	2 cut(s)	168, 544
MwoI	GCNNNNNNNGC	1 cut(s)	346
NciI	CCSGG	2 cut(s)	73, 74
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	795
NspI	RCATGY	4 cut(s)	107, 793, 797, 813
PaeI	GCATGC	2 cut(s)	793, 797
PciI	ACATGT	2 cut(s)	103, 809
PciSI	GCTCTTC	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	553, 596
PkrI	GCNGC	1 cut(s)	170
PscI	ACATGT	2 cut(s)	103, 809
PspEI	GGTNACC	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	683
RsaI	GTAC	3 cut(s)	477, 629, 750
RsaNI	GTAC	3 cut(s)	476, 628, 749
RseI	CAYNNNNRTG	1 cut(s)	378
SacII	CCGCGG	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	2 cut(s)	443, 829
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	1 cut(s)	395
Sau96I	GGNCC	1 cut(s)	683
ScrFI	CCNGG	2 cut(s)	73, 74
SetI	ASST	6 cut(s)	309, 314, 499, 532, 587, 761
SfaNI	GCATC	3 cut(s)	138, 584, 618
SfcI	CTRYAG	2 cut(s)	357, 561
Sfr303I	CCGCGG	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	169
SinI	GGWCC	1 cut(s)	683
SmaI	CCCGGG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	378
SphI	GCATGC	2 cut(s)	793, 797
Sse9I	AATT	3 cut(s)	389, 420, 826
SsiI	CCGC	4 cut(s)	82, 156, 166, 168
StyD4I	CCNGG	2 cut(s)	71, 72
StyI	CCWWGG	2 cut(s)	222, 341
TaaI	ACNGT	3 cut(s)	214, 627, 748
TaqI	TCGA	2 cut(s)	114, 333
TaqII	GACCGA	1 cut(s)	683
TasI	AATT	3 cut(s)	389, 420, 826
TatI	WGTACW	3 cut(s)	475, 627, 748
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	553, 596
Tru1I	TTAA	2 cut(s)	443, 829
Tru9I	TTAA	2 cut(s)	443, 829
TscAI	CASTG	4 cut(s)	199, 217, 577, 630
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	218, 390, 609
TspGWI	ACGGA	1 cut(s)	111
TspMI	CCCGGG	1 cut(s)	72
TspRI	CASTG	4 cut(s)	199, 217, 577, 630
VpaK11BI	GGWCC	1 cut(s)	683
XceI	RCATGY	4 cut(s)	107, 793, 797, 813
XmaI	CCCGGG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.