Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020800.1

Orthogroup ID

OG0009291

Physical Location & Seq

Genomic Coordinates Reverse (-)

27206 .. 34871

Gene Structure 7666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020800.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atgatcatccatagtcttgatcctaaaaaggatcctcttcgtccgaaggatgatgacgaagatgttctagagtcagaagtgccatacataagtacaataggcgcattattatacttagctcaatgtacaagactggacatctcgtttgcagtgaacttgctagctagagagatgatggattcagactcatcacacaccaggaacgccgccaacactagcatgcatcctttacccctatccaaaaacaacattggtgttttggaaggttttgctgatgctgagtatctctctgacccacaaaggttattcccaaactggttttgtgttcaccatggaggacagatcatcagcatatcatatatgatggggaagcaaacagagggtggcttcaagttggagcagaggcacggcaaggctcgggtcagggtcgcccgggtttggcggaacaatcccgacggacgacatgtcatcgtcgaatggtgcgtcagcatcagcctcctctctgattgcctcaccgcttatacccgcggcgacaactccgatatcgtcgccactgacaccatgaaaaacactgtgtatgccaaggcgaaggaatgtgtggaacaagtttcggtggaagatttcgcagttctacttgcgaagcacttcacatctctttaccagcaggtcacctgtgccattgtaaacattgtcgagaagccatgggagcgtgtatctgtagatggtgaaacacatgaacatggtttcaaattaggatcggagaggcacacaacggaagtaattttagagaagtctggtgcattaaggatgacttctggtattgaaggactggctgtactgaagacaacaaagtcaggttttgaggggtttattagggacaaatacacagctcttcctgacacgcgagagagaattctggctacagaaatcactgcatcatggaggtatctatatgaatctatttttagcatccctcaaaagccactgtacttcacagaaagatacttgaatgtgaaaaaagttctgaccgacactttctatggtcctccaaaagaaggaatatacagcccgtctgtgcaaagcactctttatgacatggcaaagactgtactcaaaagttttcccgacatagcagctgttcaactgaaaatgccaaatctccatttcttacctgttaacctctcaaacaaggatggtactatagtcaagtttgaagatgatgtttacgtaccaacagatgaaccacatggatcaatccaagctaccctaagccgtttatggtcaaagatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004846 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016491 GO:0016661 GO:0016663 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko01100 ko01120 map00230 map00232 map01100 map01120

Pfam Domains

Protein Families

Uricase

Protein Analysis

430

Amino Acids

48.48

Weight (kDa)

6.03

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26230
fragaria_vesca	FvH4_7g03231 FvH4_7g03231
malus_domestica	MD02G1258600.v1.1 MD07G1062200.v1.1
prunus_persica	Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1
pyrus_communis	pycom02g21980 pycom07g04770
rosa_chinensis	RchiOBHm_Chr1g0325281 RchiOBHm_Chr1g0325311
rosa_laevigata	RLG00000030147
rosa_multiflora	Rmu_sc0007742.1_g000034 Rmu_sc0020800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00324830
rosa_rugosa	Rorug01G0051200
rosa_samantha	Rh1AG066400 Rh1BG054500 Rh1CG067800 Rh1DG072600
rosa_wichuraiana	Rw1G005550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	850
Acc36I	ACCTGC	1 cut(s)	655
AccII	CGCG	2 cut(s)	528, 904
AciI	CCGC	5 cut(s)	207, 442, 516, 526, 528
AclWI	GGATC	5 cut(s)	14, 26, 39, 763, 1258
AcsI	RAATTY	1 cut(s)	912
AcuI	CTGAAG	1 cut(s)	860
AfaI	GTAC	7 cut(s)	94, 127, 837, 989, 1110, 1198, 1230
AfiI	CCNNNNNNNGG	2 cut(s)	438, 1055
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	6 cut(s)	391, 748, 824, 1009, 1142, 1214
AhdI	GACNNNNNGTC	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	5 cut(s)	119, 164, 890, 1136, 1262
AluI	AGCT	5 cut(s)	119, 164, 890, 1136, 1262
AlwI	GGATC	5 cut(s)	14, 26, 39, 763, 1258
Ama87I	CYCGRG	2 cut(s)	417, 432
ApeKI	GCWGC	1 cut(s)	1133
ApoI	RAATTY	1 cut(s)	912
ArsI	GACNNNNNNTTYG	4 cut(s)	128, 160, 468, 500
Asp700I	GAANNNNTTC	2 cut(s)	63, 644
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	1043
AsuC2I	CCSGG	2 cut(s)	433, 434
AsuHPI	GGTGA	4 cut(s)	320, 505, 661, 737
AsuNHI	GCTAGC	1 cut(s)	160
AvaI	CYCGRG	2 cut(s)	417, 432
AvaII	GGWCC	1 cut(s)	1043
BaeI	ACNNNNGTAYC	2 cut(s)	1188, 1221
BamHI	GGATCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	848
BbvI	GCAGC	1 cut(s)	1145
BccI	CCATC	4 cut(s)	169, 358, 716, 1187
BceAI	ACGGC	2 cut(s)	424, 1257
BciT130I	CCWGG	1 cut(s)	199
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	433, 434
BfaI	CTAG	4 cut(s)	68, 161, 165, 216
BfmI	CTRYAG	3 cut(s)	717, 921, 1200
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	3 cut(s)	207, 529, 1134
BlsI	GCNGC	3 cut(s)	208, 530, 1135
Bme1390I	CCNGG	3 cut(s)	199, 433, 434
Bme18I	GGWCC	1 cut(s)	1043
BmeRI	GACNNNNNGTC	1 cut(s)	464
BmeT110I	CYCGRG	2 cut(s)	417, 432
BmgT120I	GGNCC	1 cut(s)	1043
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	3 cut(s)	199, 433, 434
BmsI	GCATC	5 cut(s)	232, 265, 498, 944, 978
BmtI	GCTAGC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	848
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
Bpu10I	CCTNAGC	1 cut(s)	1268
BpuMI	CCSGG	2 cut(s)	433, 434
BsaAI	YACGTR	1 cut(s)	1228
BsaJI	CCNNGG	5 cut(s)	331, 432, 526, 582, 701
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 1055
Bse1I	ACTGG	3 cut(s)	138, 320, 834
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	5 cut(s)	331, 432, 526, 582, 701
BseGI	GGATG	6 cut(s)	6, 55, 223, 813, 969, 1198
BseLI	CCNNNNNNNGG	2 cut(s)	438, 1055
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	3 cut(s)	138, 320, 834
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	1145
Bsh1236I	CGCG	2 cut(s)	528, 904
BsiHKCI	CYCGRG	2 cut(s)	417, 432
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	890
BslI	CCNNNNNNNGG	2 cut(s)	438, 1055
BsmFI	GGGAC	1 cut(s)	890
BsoBI	CYCGRG	2 cut(s)	417, 432
Bsp1407I	TGTACA	1 cut(s)	125
Bsp143I	GATC	6 cut(s)	3, 19, 31, 342, 755, 1250
Bsp19I	CCATGG	2 cut(s)	331, 701
BspACI	CCGC	5 cut(s)	207, 442, 516, 526, 528
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	2 cut(s)	528, 904
BspLI	GGNNCC	1 cut(s)	33
BspMI	ACCTGC	1 cut(s)	655
BspOI	GCTAGC	1 cut(s)	164
BspPI	GGATC	5 cut(s)	14, 26, 39, 763, 1258
BspQI	GCTCTTC	1 cut(s)	897
BsrGI	TGTACA	1 cut(s)	125
BsrI	ACTGG	3 cut(s)	138, 320, 834
BssECI	CCNNGG	5 cut(s)	331, 432, 526, 582, 701
BssMI	GATC	6 cut(s)	3, 19, 31, 342, 755, 1250
BssT1I	CCWWGG	3 cut(s)	331, 582, 701
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	574, 987, 1108
Bst6I	CTCTTC	2 cut(s)	42, 897
BstAUI	TGTACA	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	1228
BstC8I	GCNNGC	2 cut(s)	162, 221
BstDEI	CTNAG	3 cut(s)	115, 279, 1268
BstDSI	CCRYGG	3 cut(s)	331, 526, 701
BstEII	GGTNACC	1 cut(s)	667
BstF5I	GGATG	6 cut(s)	6, 55, 223, 813, 969, 1198
BstFNI	CGCG	2 cut(s)	528, 904
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	6 cut(s)	6, 22, 34, 345, 758, 1253
BstMBI	GATC	6 cut(s)	3, 19, 31, 342, 755, 1250
BstMWI	GCNNNNNNNGC	1 cut(s)	706
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	2 cut(s)	223, 467
BstPI	GGTNACC	1 cut(s)	667
BstSCI	CCNGG	3 cut(s)	197, 431, 432
BstSFI	CTRYAG	3 cut(s)	717, 921, 1200
BstSNI	TACGTA	1 cut(s)	1228
BstUI	CGCG	2 cut(s)	528, 904
BstV1I	GCAGC	1 cut(s)	1145
BstV2I	GAAGAC	1 cut(s)	848
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BtgI	CCRYGG	3 cut(s)	331, 526, 701
BtsCI	GGATG	6 cut(s)	6, 55, 223, 813, 969, 1198
BtsI	GCAGTG	2 cut(s)	156, 930
BtsIMutI	CAGTG	5 cut(s)	156, 552, 570, 930, 983
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	2 cut(s)	162, 221
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	1043
Cfr42I	CCGCGG	1 cut(s)	529
Cfr9I	CCCGGG	1 cut(s)	432
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	7 cut(s)	93, 126, 836, 988, 1109, 1197, 1229
CviQI	GTAC	7 cut(s)	93, 126, 836, 988, 1109, 1197, 1229
DdeI	CTNAG	3 cut(s)	115, 279, 1268
DpnI	GATC	6 cut(s)	5, 21, 33, 344, 757, 1252
DpnII	GATC	6 cut(s)	3, 19, 31, 342, 755, 1250
DrdI	GACNNNNNNGTC	1 cut(s)	850
DriI	GACNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	850
Eam1104I	CTCTTC	2 cut(s)	42, 897
Eam1105I	GACNNNNNGTC	1 cut(s)	464
EarI	CTCTTC	2 cut(s)	42, 897
EciI	GGCGGA	1 cut(s)	457
Eco105I	TACGTA	1 cut(s)	1228
Eco130I	CCWWGG	3 cut(s)	331, 582, 701
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	1043
Eco57I	CTGAAG	1 cut(s)	860
Eco88I	CYCGRG	2 cut(s)	417, 432
Eco91I	GGTNACC	1 cut(s)	667
EcoO65I	GGTNACC	1 cut(s)	667
EcoRI	GAATTC	1 cut(s)	912
EcoRII	CCWGG	1 cut(s)	197
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	3 cut(s)	331, 582, 701
EcoT22I	ATGCAT	1 cut(s)	225
ErhI	CCWWGG	3 cut(s)	331, 582, 701
FalI	AAGNNNNNCTT	2 cut(s)	796, 828
FaqI	GGGAC	1 cut(s)	890
FauI	CCCGC	1 cut(s)	533
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	207, 529, 1134
FokI	GGATG	5 cut(s)	62, 210, 820, 956, 1205
Fsp4HI	GCNGC	3 cut(s)	207, 529, 1134
FspBI	CTAG	4 cut(s)	68, 161, 165, 216
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	3 cut(s)	207, 529, 1134
HapII	CCGG	1 cut(s)	433
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	1 cut(s)	104
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	1177
HindII	GTYRAC	1 cut(s)	1177
HinfI	GANTC	4 cut(s)	71, 179, 185, 956
HpaI	GTTAAC	1 cut(s)	1177
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	4 cut(s)	320, 505, 661, 737
Hpy166II	GTNNAC	5 cut(s)	154, 328, 685, 1177, 1225
Hpy188I	TCNGA	8 cut(s)	45, 76, 184, 292, 505, 541, 760, 1026
Hpy188III	TCNNGA	6 cut(s)	17, 68, 452, 694, 896, 1124
Hpy8I	GTNNAC	5 cut(s)	154, 328, 685, 1177, 1225
Hpy99I	CGWCG	3 cut(s)	458, 476, 551
HpyAV	CCTTC	5 cut(s)	40, 257, 583, 818, 1049
HpyCH4III	ACNGT	3 cut(s)	574, 987, 1108
HpyCH4IV	ACGT	1 cut(s)	1227
HpyCH4V	TGCA	5 cut(s)	149, 223, 800, 935, 1078
HpyF10VI	GCNNNNNNNGC	1 cut(s)	706
HpyF3I	CTNAG	3 cut(s)	115, 279, 1268
HpySE526I	ACGT	1 cut(s)	1227
HspAI	GCGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	1177
KspI	CCGCGG	1 cut(s)	529
Kzo9I	GATC	6 cut(s)	3, 19, 31, 342, 755, 1250
LguI	GCTCTTC	1 cut(s)	897
LmnI	GCTCC	2 cut(s)	397, 706
Lsp1109I	GCAGC	1 cut(s)	1145
LweI	GCATC	5 cut(s)	232, 265, 498, 944, 978
MaeI	CTAG	4 cut(s)	68, 161, 165, 216
MaeII	ACGT	1 cut(s)	1227
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	6 cut(s)	5, 21, 33, 344, 757, 1252
MboI	GATC	6 cut(s)	3, 19, 31, 342, 755, 1250
MboII	GAAGA	6 cut(s)	29, 71, 629, 853, 884, 1226
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	3 cut(s)	749, 780, 912
MlyI	GAGTC	2 cut(s)	80, 179
MmeI	TCCRAC	1 cut(s)	375
Mph1103I	ATGCAT	1 cut(s)	225
MroXI	GAANNNNTTC	2 cut(s)	63, 644
MseI	TTAA	2 cut(s)	803, 1176
MslI	CAYNNNNRTG	2 cut(s)	218, 738
MspA1I	CMGCKG	2 cut(s)	528, 1136
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	3 cut(s)	199, 433, 434
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	2 cut(s)	528, 904
MwoI	GCNNNNNNNGC	1 cut(s)	706
NciI	CCSGG	2 cut(s)	433, 434
NcoI	CCATGG	2 cut(s)	331, 701
NdeII	GATC	6 cut(s)	3, 19, 31, 342, 755, 1250
NheI	GCTAGC	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	667
NsiI	ATGCAT	1 cut(s)	225
NspI	RCATGY	2 cut(s)	223, 467
PaeI	GCATGC	1 cut(s)	223
PciI	ACATGT	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	897
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PdmI	GAANNNNTTC	2 cut(s)	63, 644
PfeI	GAWTC	2 cut(s)	179, 956
PkrI	GCNGC	3 cut(s)	208, 530, 1135
PleI	GAGTC	2 cut(s)	79, 179
PpsI	GAGTC	2 cut(s)	79, 179
Ppu21I	YACGTR	1 cut(s)	1228
PscI	ACATGT	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	197
PspEI	GGTNACC	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	1043
PsuI	RGATCY	1 cut(s)	31
PvuII	CAGCTG	1 cut(s)	1136
RsaI	GTAC	7 cut(s)	94, 127, 837, 989, 1110, 1198, 1230
RsaNI	GTAC	7 cut(s)	93, 126, 836, 988, 1109, 1197, 1229
RseI	CAYNNNNRTG	2 cut(s)	218, 738
SacII	CCGCGG	1 cut(s)	529
SapI	GCTCTTC	1 cut(s)	897
SaqAI	TTAA	2 cut(s)	803, 1176
SatI	GCNGC	3 cut(s)	207, 529, 1134
Sau3AI	GATC	6 cut(s)	3, 19, 31, 342, 755, 1250
Sau96I	GGNCC	1 cut(s)	1043
SchI	GAGTC	2 cut(s)	80, 179
ScrFI	CCNGG	3 cut(s)	199, 433, 434
SfaNI	GCATC	5 cut(s)	232, 265, 498, 944, 978
SfcI	CTRYAG	3 cut(s)	717, 921, 1200
Sfr303I	CCGCGG	1 cut(s)	529
SgrBI	CCGCGG	1 cut(s)	529
SinI	GGWCC	1 cut(s)	1043
SmaI	CCCGGG	1 cut(s)	434
SmiMI	CAYNNNNRTG	2 cut(s)	218, 738
SnaBI	TACGTA	1 cut(s)	1228
SphI	GCATGC	1 cut(s)	223
Sse9I	AATT	3 cut(s)	749, 780, 912
SsiI	CCGC	5 cut(s)	207, 442, 516, 526, 528
SspMI	CTAG	4 cut(s)	68, 161, 165, 216
StyD4I	CCNGG	3 cut(s)	197, 431, 432
StyI	CCWWGG	3 cut(s)	331, 582, 701
TaaI	ACNGT	3 cut(s)	574, 987, 1108
TaiI	ACGT	1 cut(s)	1230
TaqI	TCGA	2 cut(s)	474, 693
TaqII	GACCGA	1 cut(s)	1043
TasI	AATT	3 cut(s)	749, 780, 912
TatI	WGTACW	5 cut(s)	92, 125, 835, 987, 1108
TauI	GCSGC	2 cut(s)	209, 531
TfiI	GAWTC	2 cut(s)	179, 956
Tru1I	TTAA	2 cut(s)	803, 1176
Tru9I	TTAA	2 cut(s)	803, 1176
TscAI	CASTG	5 cut(s)	156, 559, 577, 937, 990
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	1 cut(s)	1133
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	4 cut(s)	578, 750, 969, 1254
TspGWI	ACGGA	2 cut(s)	471, 788
TspMI	CCCGGG	1 cut(s)	432
TspRI	CASTG	5 cut(s)	156, 559, 577, 937, 990
VpaK11BI	GGWCC	1 cut(s)	1043
XapI	RAATTY	1 cut(s)	912
XbaI	TCTAGA	1 cut(s)	67
XceI	RCATGY	2 cut(s)	223, 467
XmaI	CCCGGG	1 cut(s)	432
XmnI	GAANNNNTTC	2 cut(s)	63, 644
XspI	CTAG	4 cut(s)	68, 161, 165, 216
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.