Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009291

Physical Location & Seq

Genomic Coordinates Forward (+)

8001639 .. 8007115

Gene Structure 5477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG054500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGAAGCAAACAGAGGGTGGGTTCAAGTTGGAGCAGAGGCACGGCAAGGCTCGGGTCAGGGTCGCCCGGGTTTGGCGGAACAAACCCGACGGACGACATGTCATCGTCGAATGGTGCGTCAGCATCAGCCTCCTCTCTGATTGCCTCACCGCTTATACCCGCGGCGACAACTCCGATATCGTCGCCACTGACACCATGAAGAACACCGTGTATGCCAAGGCGAAGGAATGTGTGGAACAAGTTTCGGTGGAAGATTTCGCAGTTCTACTTGCGAAACACTTCACATCTCTTTACCAGCAGGTCACCTGTGCCATTGTAAACATTGTTGAGAAGCCATGGGAGCGTGTATCTGTAGATGGTGAAACACATGAACATGGTTTCAAATTAGGATCGGAGAGGCACACAACAGAAGTAATTTTAGAGAAGTCTGGTGCATTAAGGATGACTTCTGGTATTGAAGGACTGGCTGTACTGAAGACAACAAAGTCAGGTTTTGAGGGGTTTATTAGGGACAAATACACAGCTCTTCCTGACACGCGAGAGAGGATTCTGGCTACAGAAATCACTGCATCATGGAGGTATCTATATGAATCTATTTATAGCATCCCTCAAAAGCCACTATACTTCACAGAAGGATACTTGAATGTGAAAAAAGTTCTGACAGACACTTTCTATGGTCCTCCAAAAGAAGGAATATACAGCCCGTCTGTGCAAAGCACTCTGTATGACATGGCAAAGACTGTACTCAAAAGTTTTCCCGACATAGCAGCTGTTCAACTGAAAATGCCAAATCTCCATTTCTTACCTGTTAACCTCTCAAACAAGGATGGTACTATAGTCAAGTTTGAAGATGATGTTTACGTACCAACAGATGAACCACATGGATCAATCCAAGCCACCCTAAGCCGTTTATGGTCAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004846 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016491 GO:0016661 GO:0016663 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko01100 ko01120 map00230 map00232 map01100 map01120

Pfam Domains

Protein Families

Uricase

Protein Analysis

309

Amino Acids

34.92

Weight (kDa)

7.09

Isoelectric Point (pI)

29.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Uricase	PF01014	14 - 139	1.8e-21	Uricase
Uricase	PF01014	150 - 299	1.1e-39	Uricase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26230
fragaria_vesca	FvH4_7g03231 FvH4_7g03231
malus_domestica	MD02G1258600.v1.1 MD07G1062200.v1.1
prunus_persica	Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1
pyrus_communis	pycom02g21980 pycom07g04770
rosa_chinensis	RchiOBHm_Chr1g0325281 RchiOBHm_Chr1g0325311
rosa_laevigata	RLG00000030147
rosa_multiflora	Rmu_sc0007742.1_g000034 Rmu_sc0020800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00324830
rosa_rugosa	Rorug01G0051200
rosa_samantha	Rh1AG066400 Rh1BG054500 Rh1CG067800 Rh1DG072600
rosa_wichuraiana	Rw1G005550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	487
Acc36I	ACCTGC	1 cut(s)	292
AccII	CGCG	2 cut(s)	165, 541
AciI	CCGC	4 cut(s)	79, 153, 163, 165
AclWI	GGATC	2 cut(s)	400, 895
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	4 cut(s)	474, 747, 835, 867
AfiI	CCNNNNNNNGG	2 cut(s)	75, 692
AflIII	ACRYGT	1 cut(s)	100
AgsI	TTSAA	6 cut(s)	28, 385, 461, 646, 779, 851
AhdI	GACNNNNNGTC	1 cut(s)	101
AluBI	AGCT	2 cut(s)	527, 773
AluI	AGCT	2 cut(s)	527, 773
AlwI	GGATC	2 cut(s)	400, 895
Ama87I	CYCGRG	2 cut(s)	54, 69
ApeKI	GCWGC	1 cut(s)	770
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	680
AsuC2I	CCSGG	2 cut(s)	70, 71
AsuHPI	GGTGA	3 cut(s)	142, 298, 374
AvaI	CYCGRG	2 cut(s)	54, 69
AvaII	GGWCC	1 cut(s)	680
BaeI	ACNNNNGTAYC	2 cut(s)	825, 858
BbsI	GAAGAC	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	782
BccI	CCATC	2 cut(s)	353, 824
BceAI	ACGGC	2 cut(s)	61, 894
BciVI	GTATCC	1 cut(s)	632
BcnI	CCSGG	2 cut(s)	70, 71
BfmI	CTRYAG	3 cut(s)	354, 558, 837
BfuAI	ACCTGC	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	632
BisI	GCNGC	2 cut(s)	166, 771
BlsI	GCNGC	2 cut(s)	167, 772
Bme1390I	CCNGG	2 cut(s)	70, 71
Bme18I	GGWCC	1 cut(s)	680
BmeRI	GACNNNNNGTC	1 cut(s)	101
BmeT110I	CYCGRG	2 cut(s)	54, 69
BmgT120I	GGNCC	1 cut(s)	680
BmrFI	CCNGG	2 cut(s)	70, 71
BmsI	GCATC	3 cut(s)	135, 581, 615
BpiI	GAAGAC	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	905
BpuMI	CCSGG	2 cut(s)	70, 71
BsaAI	YACGTR	1 cut(s)	865
BsaJI	CCNNGG	4 cut(s)	69, 163, 219, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 692
Bse1I	ACTGG	1 cut(s)	471
BseDI	CCNNGG	4 cut(s)	69, 163, 219, 338
BseGI	GGATG	3 cut(s)	450, 606, 835
BseLI	CCNNNNNNNGG	2 cut(s)	75, 692
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	782
Bsh1236I	CGCG	2 cut(s)	165, 541
BsiHKCI	CYCGRG	2 cut(s)	54, 69
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	2 cut(s)	75, 692
BsmFI	GGGAC	1 cut(s)	527
BsoBI	CYCGRG	2 cut(s)	54, 69
Bsp143I	GATC	2 cut(s)	392, 887
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	4 cut(s)	79, 153, 163, 165
BspFNI	CGCG	2 cut(s)	165, 541
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	400, 895
BspQI	GCTCTTC	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	4 cut(s)	69, 163, 219, 338
BssMI	GATC	2 cut(s)	392, 887
BssT1I	CCWWGG	2 cut(s)	219, 338
Bst4CI	ACNGT	2 cut(s)	211, 745
Bst6I	CTCTTC	1 cut(s)	534
BstBAI	YACGTR	1 cut(s)	865
BstDEI	CTNAG	1 cut(s)	905
BstDSI	CCRYGG	2 cut(s)	163, 338
BstEII	GGTNACC	1 cut(s)	304
BstF5I	GGATG	3 cut(s)	450, 606, 835
BstFNI	CGCG	2 cut(s)	165, 541
BstKTI	GATC	2 cut(s)	395, 890
BstMBI	GATC	2 cut(s)	392, 887
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	68, 69
BstSFI	CTRYAG	3 cut(s)	354, 558, 837
BstSNI	TACGTA	1 cut(s)	865
BstUI	CGCG	2 cut(s)	165, 541
BstV1I	GCAGC	1 cut(s)	782
BstV2I	GAAGAC	1 cut(s)	485
BsuI	GTATCC	1 cut(s)	632
BtgI	CCRYGG	2 cut(s)	163, 338
BtsCI	GGATG	3 cut(s)	450, 606, 835
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	189, 567
BveI	ACCTGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	680
Cfr42I	CCGCGG	1 cut(s)	166
Cfr9I	CCCGGG	1 cut(s)	69
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	4 cut(s)	473, 746, 834, 866
CviAII	CATG	8 cut(s)	101, 199, 339, 371, 377, 576, 733, 884
CviQI	GTAC	4 cut(s)	473, 746, 834, 866
DdeI	CTNAG	1 cut(s)	905
DpnI	GATC	2 cut(s)	394, 889
DpnII	GATC	2 cut(s)	392, 887
DrdI	GACNNNNNNGTC	1 cut(s)	487
DriI	GACNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	534
Eam1105I	GACNNNNNGTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	865
Eco130I	CCWWGG	2 cut(s)	219, 338
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	497
Eco88I	CYCGRG	2 cut(s)	54, 69
Eco91I	GGTNACC	1 cut(s)	304
EcoO65I	GGTNACC	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	219, 338
ErhI	CCWWGG	2 cut(s)	219, 338
FaeI	CATG	8 cut(s)	104, 202, 342, 374, 380, 579, 736, 887
FalI	AAGNNNNNCTT	2 cut(s)	433, 465
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	8 cut(s)	100, 198, 338, 370, 376, 575, 732, 883
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	166, 771
FokI	GGATG	3 cut(s)	457, 593, 842
Fsp4HI	GCNGC	2 cut(s)	166, 771
GluI	GCNGC	2 cut(s)	166, 771
HapII	CCGG	1 cut(s)	70
HgaI	GACGC	1 cut(s)	109
Hin1II	CATG	8 cut(s)	104, 202, 342, 374, 380, 579, 736, 887
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HinfI	GANTC	2 cut(s)	550, 593
HpaI	GTTAAC	1 cut(s)	814
HpaII	CCGG	1 cut(s)	70
HphI	GGTGA	3 cut(s)	142, 298, 374
Hpy166II	GTNNAC	3 cut(s)	322, 814, 862
Hpy188I	TCNGA	4 cut(s)	142, 178, 397, 663
Hpy188III	TCNNGA	2 cut(s)	533, 761
Hpy8I	GTNNAC	3 cut(s)	322, 814, 862
Hpy99I	CGWCG	3 cut(s)	95, 113, 188
HpyAV	CCTTC	4 cut(s)	220, 455, 629, 686
HpyCH4III	ACNGT	2 cut(s)	211, 745
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	3 cut(s)	437, 572, 715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	1 cut(s)	905
HpySE526I	ACGT	1 cut(s)	864
Hsp92II	CATG	8 cut(s)	104, 202, 342, 374, 380, 579, 736, 887
KspAI	GTTAAC	1 cut(s)	814
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	392, 887
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	2 cut(s)	34, 343
Lsp1109I	GCAGC	1 cut(s)	782
LweI	GCATC	3 cut(s)	135, 581, 615
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	394, 889
MboI	GATC	2 cut(s)	392, 887
MboII	GAAGA	5 cut(s)	214, 266, 490, 521, 863
MluCI	AATT	2 cut(s)	386, 417
MmeI	TCCRAC	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	2 cut(s)	440, 813
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	2 cut(s)	165, 773
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	70, 71
MvnI	CGCG	2 cut(s)	165, 541
MwoI	GCNNNNNNNGC	1 cut(s)	343
NciI	CCSGG	2 cut(s)	70, 71
NcoI	CCATGG	1 cut(s)	338
NdeII	GATC	2 cut(s)	392, 887
NlaIII	CATG	8 cut(s)	104, 202, 342, 374, 380, 579, 736, 887
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	104
PciI	ACATGT	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	534
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	550, 593
PkrI	GCNGC	2 cut(s)	167, 772
Ppu21I	YACGTR	1 cut(s)	865
PscI	ACATGT	1 cut(s)	100
PspEI	GGTNACC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	4 cut(s)	474, 747, 835, 867
RsaNI	GTAC	4 cut(s)	473, 746, 834, 866
RseI	CAYNNNNRTG	1 cut(s)	375
SacII	CCGCGG	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	440, 813
SatI	GCNGC	2 cut(s)	166, 771
Sau3AI	GATC	2 cut(s)	392, 887
Sau96I	GGNCC	1 cut(s)	680
ScrFI	CCNGG	2 cut(s)	70, 71
SetI	ASST	9 cut(s)	306, 311, 496, 529, 584, 775, 811, 819, 867
SfaNI	GCATC	3 cut(s)	135, 581, 615
SfcI	CTRYAG	3 cut(s)	354, 558, 837
Sfr303I	CCGCGG	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	680
SmaI	CCCGGG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	375
SnaBI	TACGTA	1 cut(s)	865
Sse9I	AATT	2 cut(s)	386, 417
SsiI	CCGC	4 cut(s)	79, 153, 163, 165
StyD4I	CCNGG	2 cut(s)	68, 69
StyI	CCWWGG	2 cut(s)	219, 338
TaaI	ACNGT	2 cut(s)	211, 745
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	386, 417
TatI	WGTACW	2 cut(s)	472, 745
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	550, 593
Tru1I	TTAA	2 cut(s)	440, 813
Tru9I	TTAA	2 cut(s)	440, 813
TscAI	CASTG	2 cut(s)	196, 574
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	1 cut(s)	770
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	4 cut(s)	215, 387, 606, 891
TspGWI	ACGGA	1 cut(s)	108
TspMI	CCCGGG	1 cut(s)	69
TspRI	CASTG	2 cut(s)	196, 574
VpaK11BI	GGWCC	1 cut(s)	680
XceI	RCATGY	1 cut(s)	104
XmaI	CCCGGG	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.