Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009291

Physical Location & Seq

Genomic Coordinates Reverse (-)

4087311 .. 4092952

Gene Structure 5642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04770.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCGAACAGGATAGAGGGGTTCAACTTTGAGCAGAGGCATGGGAAGCAAAGGGTCAGGGTGGCGAGGGTCTGGCGGAACATCGACGGACGCCATACCATCGTCGAATGGAACGTCGGCATCAGCCTCCTCTCCGATTGCGTCTCTGCCTACACCCGCGACGACAACTCTGATATCGTTGCTACCGATACCATGAAGAACACTGTGTATGTTAAGGCAAAGGAATGTAAAGAAGAACTTTCAGTGGAGGAATTTGCAGTTCGACTTGCTAAGCACTTCACATCTCTTTACCAGCAGGTCACTACTGCCATAGTAAGGATTGTGGAGAAGCCATGGGAGCGTGCATATGTAGACGGTCAACCACATGAACATGGTTTCAAATTAGGATCCGAGAAGCGTACAACAGAGGTAATTTTAAAGAAATCTGGTGCACTGAGGGTGACTTCTGGGATTGAAGGACTATCTCTGCTAAAGACAACAAAGTCAGGTTTTGAGGGGTTTATTAGGGACAAATACACAGCTCTTCCTGACACACGAGAGAGGATTCTGGCTACAGAGATCACTGCATCATGGAAGTACCAATATGAATCCATTTTTAGCATCCCTCAAAAGACGCTGTACTTCACTGAAAGATACCTGAGTGTGAAAAAAGCTCTGGCTGACACTTTCTATGGTCCTCCAAAGGAAGGAGTATACAGCCCATCTGTCCAAAGCACTCTTTATCACATGGCAAAGACTGTTCTCAATGGGTTTCCCGACATAGAAGCAGTACAACTGAAAATGCCAAATATCCATTTCTTACCTGTTAATCTATCTAACAAGGATAATACTATTGTGAAGTTTGAGGACGATGTTTATCTTCCAACAGATGAGCCACACGGATCAATAGAAGCTACTCTAAGCCGTTTCTGGTCAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004846 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016491 GO:0016661 GO:0016663 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko01100 ko01120 map00230 map00232 map01100 map01120

Pfam Domains

Protein Families

Uricase

Protein Analysis

308

Amino Acids

35.13

Weight (kDa)

8.61

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26230
fragaria_vesca	FvH4_7g03231 FvH4_7g03231
malus_domestica	MD02G1258600.v1.1 MD07G1062200.v1.1
prunus_persica	Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1
pyrus_communis	pycom02g21980 pycom07g04770
rosa_chinensis	RchiOBHm_Chr1g0325281 RchiOBHm_Chr1g0325311
rosa_laevigata	RLG00000030147
rosa_multiflora	Rmu_sc0007742.1_g000034 Rmu_sc0020800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00324830
rosa_rugosa	Rorug01G0051200
rosa_samantha	Rh1AG066400 Rh1BG054500 Rh1CG067800 Rh1DG072600
rosa_wichuraiana	Rw1G005550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	481
Acc36I	ACCTGC	1 cut(s)	286
AccI	GTMKAC	2 cut(s)	351, 693
AccII	CGCG	1 cut(s)	159
AciI	CCGC	2 cut(s)	76, 157
AclWI	GGATC	3 cut(s)	381, 394, 889
AcsI	RAATTY	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	4 cut(s)	400, 578, 620, 771
AfiI	CCNNNNNNNGG	2 cut(s)	315, 686
AgsI	TTSAA	3 cut(s)	25, 379, 455
AluBI	AGCT	3 cut(s)	521, 653, 893
AluI	AGCT	3 cut(s)	521, 653, 893
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	1 cut(s)	148
Alw44I	GTGCAC	1 cut(s)	429
AlwI	GGATC	3 cut(s)	381, 394, 889
ApaLI	GTGCAC	1 cut(s)	429
ApoI	RAATTY	1 cut(s)	251
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AspS9I	GGNCC	1 cut(s)	674
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	674
BaeGI	GKGCMC	1 cut(s)	433
BaeI	ACNNNNGTAYC	2 cut(s)	625, 658
BamHI	GGATCC	1 cut(s)	386
BauI	CACGAG	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	433
BccI	CCATC	2 cut(s)	107, 709
BceAI	ACGGC	1 cut(s)	888
BcoDI	GTCTC	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	286
BlpI	GCTNAGC	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	674
BmgT120I	GGNCC	1 cut(s)	674
BmiI	GGNNCC	1 cut(s)	388
BmsI	GCATC	3 cut(s)	129, 575, 609
Bpu1102I	GCTNAGC	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 686
Bse8I	GATNNNNATC	1 cut(s)	855
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	1 cut(s)	600
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	2 cut(s)	315, 686
BseMII	CTCAG	2 cut(s)	425, 629
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	433
Bsh1236I	CGCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	315, 686
BsmAI	GTCTC	1 cut(s)	148
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	386, 558, 881
Bsp1720I	GCTNAGC	1 cut(s)	270
Bsp19I	CCATGG	1 cut(s)	332
BspACI	CCGC	2 cut(s)	76, 157
BspCNI	CTCAG	2 cut(s)	426, 630
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	3 cut(s)	381, 394, 889
BspQI	GCTCTTC	1 cut(s)	528
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	3 cut(s)	386, 558, 881
BssNAI	GTATAC	1 cut(s)	694
BssNI	GRCGYC	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	534
BssT1I	CCWWGG	1 cut(s)	332
Bst1107I	GTATAC	1 cut(s)	694
Bst2BI	CACGAG	1 cut(s)	534
Bst4CI	ACNGT	3 cut(s)	205, 356, 739
Bst6I	CTCTTC	1 cut(s)	528
BstACI	GRCGYC	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	4 cut(s)	270, 434, 638, 899
BstDSI	CCRYGG	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	600
BstFNI	CGCG	1 cut(s)	159
BstKTI	GATC	3 cut(s)	389, 561, 884
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	3 cut(s)	386, 558, 881
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 337
BstSFI	CTRYAG	1 cut(s)	552
BstSLI	GKGCMC	1 cut(s)	433
BstUI	CGCG	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BstZ17I	GTATAC	1 cut(s)	694
BtgI	CCRYGG	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	600
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	5 cut(s)	201, 249, 431, 561, 624
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	674
CseI	GACGC	3 cut(s)	99, 130, 622
Csp6I	GTAC	4 cut(s)	399, 577, 619, 770
CviAII	CATG	7 cut(s)	41, 193, 333, 365, 371, 570, 727
CviQI	GTAC	4 cut(s)	399, 577, 619, 770
DdeI	CTNAG	4 cut(s)	270, 434, 638, 899
DpnI	GATC	3 cut(s)	388, 560, 883
DpnII	GATC	3 cut(s)	386, 558, 881
DraI	TTTAAA	1 cut(s)	417
DrdI	GACNNNNNNGTC	1 cut(s)	481
DseDI	GACNNNNNNGTC	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	674
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	7 cut(s)	44, 196, 336, 368, 374, 573, 730
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	7 cut(s)	40, 192, 332, 364, 370, 569, 726
FauI	CCCGC	1 cut(s)	164
FauNDI	CATATG	1 cut(s)	346
FblI	GTMKAC	2 cut(s)	351, 693
FokI	GGATG	1 cut(s)	587
HgaI	GACGC	3 cut(s)	99, 130, 622
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	7 cut(s)	44, 196, 336, 368, 374, 573, 730
HincII	GTYRAC	1 cut(s)	359
HindII	GTYRAC	1 cut(s)	359
HinfI	GANTC	2 cut(s)	544, 587
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	4 cut(s)	352, 359, 431, 694
Hpy188I	TCNGA	3 cut(s)	136, 172, 391
Hpy188III	TCNNGA	2 cut(s)	527, 755
Hpy8I	GTNNAC	4 cut(s)	352, 359, 431, 694
Hpy99I	CGWCG	4 cut(s)	89, 107, 119, 164
HpyAV	CCTTC	2 cut(s)	449, 680
HpyCH4III	ACNGT	3 cut(s)	205, 356, 739
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	4 cut(s)	257, 344, 431, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 337
HpyF3I	CTNAG	4 cut(s)	270, 434, 638, 899
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	7 cut(s)	44, 196, 336, 368, 374, 573, 730
Kzo9I	GATC	3 cut(s)	386, 558, 881
LguI	GCTCTTC	1 cut(s)	528
LmnI	GCTCC	1 cut(s)	337
LweI	GCATC	3 cut(s)	129, 575, 609
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	298, 439
MalI	GATC	3 cut(s)	388, 560, 883
MboI	GATC	3 cut(s)	386, 558, 881
MboII	GAAGA	4 cut(s)	208, 245, 515, 851
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	3 cut(s)	251, 380, 411
MmeI	TCCRAC	1 cut(s)	887
MseI	TTAA	3 cut(s)	213, 416, 807
MslI	CAYNNNNRTG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	46, 337
NcoI	CCATGG	1 cut(s)	332
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	3 cut(s)	386, 558, 881
NlaIII	CATG	7 cut(s)	44, 196, 336, 368, 374, 573, 730
NlaIV	GGNNCC	1 cut(s)	388
NmuCI	GTSAC	2 cut(s)	298, 439
PciSI	GCTCTTC	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 183
PfeI	GAWTC	2 cut(s)	544, 587
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	4 cut(s)	400, 578, 620, 771
RsaNI	GTAC	4 cut(s)	399, 577, 619, 770
RseI	CAYNNNNRTG	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	3 cut(s)	213, 416, 807
Sau3AI	GATC	3 cut(s)	386, 558, 881
Sau96I	GGNCC	1 cut(s)	674
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	9 cut(s)	117, 300, 411, 490, 523, 639, 655, 805, 895
SfaNI	GCATC	3 cut(s)	129, 575, 609
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	674
SmiMI	CAYNNNNRTG	1 cut(s)	369
Sse9I	AATT	3 cut(s)	251, 380, 411
SsiI	CCGC	2 cut(s)	76, 157
StyI	CCWWGG	1 cut(s)	332
TaaI	ACNGT	3 cut(s)	205, 356, 739
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	3 cut(s)	84, 105, 262
TasI	AATT	3 cut(s)	251, 380, 411
TatI	WGTACW	2 cut(s)	618, 769
TfiI	GAWTC	2 cut(s)	544, 587
Tru1I	TTAA	3 cut(s)	213, 416, 807
Tru9I	TTAA	3 cut(s)	213, 416, 807
TscAI	CASTG	5 cut(s)	208, 249, 438, 568, 631
TseFI	GTSAC	2 cut(s)	298, 439
Tsp45I	GTSAC	2 cut(s)	298, 439
TspDTI	ATGAA	3 cut(s)	209, 381, 600
TspGWI	ACGGA	2 cut(s)	102, 894
TspRI	CASTG	5 cut(s)	208, 249, 438, 568, 631
VneI	GTGCAC	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	674
XapI	RAATTY	1 cut(s)	251
XmiI	GTMKAC	2 cut(s)	351, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.