Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009291

Physical Location & Seq

Genomic Coordinates Forward (+)

13274766 .. 13280408

Gene Structure 5643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55504

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGATGGGGAAGCAAACAGAGGGTGGGTTCAAGTTGGAGCAGAGGCACGGCAAGGCTCGGGTCAGGGTCGCCCGGGTTTGGCGGAACAAACCCGACGGACCACATGTCATCGTCGAATGGTGCGTCAGCATCAGCCTCCTCTCTGAATGCCTCACCGCTTATACCCGCGGCGACAACTCCGATATCGTCGCCACTGACACCATGAAGAACACTGTGTATGCCAAGGCGAAGGAATGTGTGGAACAAGTTTCGGTTGAAGATTTCGCAGTTCTACTTGCGAAACACTTCACATCTCTTTACCAGCAGGTCACCTGTGCCATTGTAAACATTGTTGAGAAGCCATGGGAGCGTGTATCTGTAGATGGTGAAACACATGAACATGGTTTCAAATTAGGATCGGAGAGGCACACAACAGAAGTAATTTTAGAGAAGTCTGGTGCATTACGGATGACTTCTGGTATTGAAGGACTGGCTGTACTGAAGACAACAAAGGCCCAAAAAGAAGTCACCAAAAGGAACATCATTATGTGCAAGGATACGGATATTATTAGTCTTCCTTTACCCTTGAACATGCCCAGAAGAATTAGATCCATGATCCTCAACACCCATCTTCTCCATCACTGCCTTAAGTCAGGTTTTGAGGGGTTTATTAGGGACAAATACACAGCTCTTCCTGACACGCGAGAGAGGATTCTGGCTACAGAAATCACTGCATCATGGAGGTATCTATATGAATCTATTTTTAGCATCCCTCTAAAGCCACTGTACTTCACAGAAAGATACTTGAATGTGAAAAAAGTTCTGACCGACACTTTCTATGGTCCTCCAAAAGAAGGAATATACAGCCCGTCTGTGCAAAGCACTCTTTATGACATGGCAAAGACTGTACTCAAAAGTTTTCCCGACATAGCAGCTGTTCAACTGAAAATGCCAAATCTCCATTTCTTACCTGTTAACCTCTCAAACAAGGATGGTACTATAGTCAAGTTTGAAGATGATGTTTACGTACCAACAGATGAACCACATGGATCAATCCAAGCTACCCTAAGCCGTTTATGGTCAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004846 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016491 GO:0016661 GO:0016663 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko01100 ko01120 map00230 map00232 map01100 map01120

Pfam Domains

Protein Families

Uricase

Protein Analysis

356

Amino Acids

40.39

Weight (kDa)

8.84

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Uricase	PF01014	15 - 140	1.5e-20	Uricase
Uricase	PF01014	203 - 346	3.4e-34	Uricase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26230
fragaria_vesca	FvH4_7g03231 FvH4_7g03231
malus_domestica	MD02G1258600.v1.1 MD07G1062200.v1.1
prunus_persica	Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1
pyrus_communis	pycom02g21980 pycom07g04770
rosa_chinensis	RchiOBHm_Chr1g0325281 RchiOBHm_Chr1g0325311
rosa_laevigata	RLG00000030147
rosa_multiflora	Rmu_sc0007742.1_g000034 Rmu_sc0020800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00324830
rosa_rugosa	Rorug01G0051200
rosa_samantha	Rh1AG066400 Rh1BG054500 Rh1CG067800 Rh1DG072600
rosa_wichuraiana	Rw1G005550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AccII	CGCG	2 cut(s)	168, 682
AciI	CCGC	4 cut(s)	82, 156, 166, 168
AclWI	GGATC	4 cut(s)	403, 582, 589, 1036
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	5 cut(s)	477, 767, 888, 976, 1008
AfiI	CCNNNNNNNGG	2 cut(s)	78, 833
AflII	CTTAAG	1 cut(s)	626
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	8 cut(s)	31, 257, 388, 464, 568, 787, 920, 992
AhdI	GACNNNNNGTC	1 cut(s)	104
AluBI	AGCT	3 cut(s)	668, 914, 1040
AluI	AGCT	3 cut(s)	668, 914, 1040
AlwI	GGATC	4 cut(s)	403, 582, 589, 1036
Ama87I	CYCGRG	2 cut(s)	57, 72
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	1 cut(s)	911
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
Asp700I	GAANNNNTTC	1 cut(s)	284
AspS9I	GGNCC	3 cut(s)	98, 493, 821
AsuC2I	CCSGG	2 cut(s)	73, 74
AsuHPI	GGTGA	4 cut(s)	145, 301, 377, 499
AvaI	CYCGRG	2 cut(s)	57, 72
AvaII	GGWCC	2 cut(s)	98, 821
BaeI	ACNNNNGTAYC	2 cut(s)	966, 999
BbsI	GAAGAC	2 cut(s)	488, 545
BbvI	GCAGC	1 cut(s)	923
BccI	CCATC	4 cut(s)	356, 615, 624, 965
BceAI	ACGGC	2 cut(s)	64, 1035
BciVI	GTATCC	1 cut(s)	529
BcnI	CCSGG	2 cut(s)	73, 74
BfmI	CTRYAG	3 cut(s)	357, 699, 978
BfrI	CTTAAG	1 cut(s)	626
BfuAI	ACCTGC	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	529
BisI	GCNGC	2 cut(s)	169, 912
BlsI	GCNGC	2 cut(s)	170, 913
Bme1390I	CCNGG	2 cut(s)	73, 74
Bme18I	GGWCC	2 cut(s)	98, 821
BmeRI	GACNNNNNGTC	1 cut(s)	104
BmeT110I	CYCGRG	2 cut(s)	57, 72
BmgT120I	GGNCC	3 cut(s)	98, 493, 821
BmrFI	CCNGG	2 cut(s)	73, 74
BmsI	GCATC	3 cut(s)	138, 722, 756
BpiI	GAAGAC	2 cut(s)	488, 545
Bpu10I	CCTNAGC	1 cut(s)	1046
BpuMI	CCSGG	2 cut(s)	73, 74
BsaAI	YACGTR	1 cut(s)	1006
BsaJI	CCNNGG	4 cut(s)	72, 166, 222, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 833
Bse1I	ACTGG	1 cut(s)	474
BseDI	CCNNGG	4 cut(s)	72, 166, 222, 341
BseGI	GGATG	3 cut(s)	453, 747, 976
BseLI	CCNNNNNNNGG	2 cut(s)	78, 833
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	923
Bsh1236I	CGCG	2 cut(s)	168, 682
BshFI	GGCC	1 cut(s)	494
BsiHKCI	CYCGRG	2 cut(s)	57, 72
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	668
BslI	CCNNNNNNNGG	2 cut(s)	78, 833
BsmFI	GGGAC	1 cut(s)	668
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	494
BsoBI	CYCGRG	2 cut(s)	57, 72
Bsp143I	GATC	4 cut(s)	395, 587, 594, 1028
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	4 cut(s)	82, 156, 166, 168
BspANI	GGCC	1 cut(s)	494
BspFNI	CGCG	2 cut(s)	168, 682
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	4 cut(s)	403, 582, 589, 1036
BspQI	GCTCTTC	1 cut(s)	675
BspTI	CTTAAG	1 cut(s)	626
BsrI	ACTGG	1 cut(s)	474
BssECI	CCNNGG	4 cut(s)	72, 166, 222, 341
BssMI	GATC	4 cut(s)	395, 587, 594, 1028
BssT1I	CCWWGG	2 cut(s)	222, 341
Bst4CI	ACNGT	3 cut(s)	214, 765, 886
Bst6I	CTCTTC	1 cut(s)	675
BstAFI	CTTAAG	1 cut(s)	626
BstBAI	YACGTR	1 cut(s)	1006
BstDEI	CTNAG	1 cut(s)	1046
BstDSI	CCRYGG	2 cut(s)	166, 341
BstEII	GGTNACC	1 cut(s)	307
BstF5I	GGATG	3 cut(s)	453, 747, 976
BstFNI	CGCG	2 cut(s)	168, 682
BstKTI	GATC	4 cut(s)	398, 590, 597, 1031
BstMBI	GATC	4 cut(s)	395, 587, 594, 1028
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNSI	RCATGY	2 cut(s)	107, 574
BstPI	GGTNACC	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	71, 72
BstSFI	CTRYAG	3 cut(s)	357, 699, 978
BstSNI	TACGTA	1 cut(s)	1006
BstUI	CGCG	2 cut(s)	168, 682
BstV1I	GCAGC	1 cut(s)	923
BstV2I	GAAGAC	2 cut(s)	488, 545
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	494
BtgI	CCRYGG	2 cut(s)	166, 341
BtsCI	GGATG	3 cut(s)	453, 747, 976
BtsI	GCAGTG	2 cut(s)	619, 708
BtsIMutI	CAGTG	5 cut(s)	192, 210, 619, 708, 761
BveI	ACCTGC	1 cut(s)	295
Cfr13I	GGNCC	3 cut(s)	98, 493, 821
Cfr42I	CCGCGG	1 cut(s)	169
Cfr9I	CCCGGG	1 cut(s)	72
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	5 cut(s)	476, 766, 887, 975, 1007
CviQI	GTAC	5 cut(s)	476, 766, 887, 975, 1007
DdeI	CTNAG	1 cut(s)	1046
DpnI	GATC	4 cut(s)	397, 589, 596, 1030
DpnII	GATC	4 cut(s)	395, 587, 594, 1028
DriI	GACNNNNNGTC	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	675
Eam1105I	GACNNNNNGTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	675
EciI	GGCGGA	1 cut(s)	97
Eco105I	TACGTA	1 cut(s)	1006
Eco130I	CCWWGG	2 cut(s)	222, 341
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	98, 821
Eco57I	CTGAAG	1 cut(s)	500
Eco88I	CYCGRG	2 cut(s)	57, 72
Eco91I	GGTNACC	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	222, 341
ErhI	CCWWGG	2 cut(s)	222, 341
FaqI	GGGAC	1 cut(s)	668
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	2 cut(s)	169, 912
FokI	GGATG	3 cut(s)	460, 734, 983
Fsp4HI	GCNGC	2 cut(s)	169, 912
GluI	GCNGC	2 cut(s)	169, 912
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	955
HindII	GTYRAC	1 cut(s)	955
HinfI	GANTC	2 cut(s)	691, 734
HpaI	GTTAAC	1 cut(s)	955
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	4 cut(s)	145, 301, 377, 499
Hpy166II	GTNNAC	3 cut(s)	325, 955, 1003
Hpy188I	TCNGA	4 cut(s)	145, 181, 400, 804
Hpy188III	TCNNGA	2 cut(s)	674, 902
Hpy8I	GTNNAC	3 cut(s)	325, 955, 1003
Hpy99I	CGWCG	3 cut(s)	98, 116, 191
HpyAV	CCTTC	3 cut(s)	223, 458, 827
HpyCH4III	ACNGT	3 cut(s)	214, 765, 886
HpyCH4IV	ACGT	1 cut(s)	1005
HpyCH4V	TGCA	4 cut(s)	440, 531, 713, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	1 cut(s)	1046
HpySE526I	ACGT	1 cut(s)	1005
KspAI	GTTAAC	1 cut(s)	955
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	395, 587, 594, 1028
LguI	GCTCTTC	1 cut(s)	675
LmnI	GCTCC	2 cut(s)	37, 346
Lsp1109I	GCAGC	1 cut(s)	923
LweI	GCATC	3 cut(s)	138, 722, 756
MaeII	ACGT	1 cut(s)	1005
MaeIII	GTNAC	2 cut(s)	307, 505
MalI	GATC	4 cut(s)	397, 589, 596, 1030
MboI	GATC	4 cut(s)	395, 587, 594, 1028
MboII	GAAGA	8 cut(s)	217, 269, 493, 545, 591, 602, 662, 1004
MflI	RGATCY	1 cut(s)	587
MluCI	AATT	3 cut(s)	389, 420, 582
MmeI	TCCRAC	1 cut(s)	15
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	2 cut(s)	627, 954
MslI	CAYNNNNRTG	2 cut(s)	378, 524
MspA1I	CMGCKG	2 cut(s)	168, 914
MspCI	CTTAAG	1 cut(s)	626
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	73, 74
Mva1269I	GAATGC	1 cut(s)	152
MvnI	CGCG	2 cut(s)	168, 682
MwoI	GCNNNNNNNGC	1 cut(s)	346
NciI	CCSGG	2 cut(s)	73, 74
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	4 cut(s)	395, 587, 594, 1028
NmuCI	GTSAC	2 cut(s)	307, 505
NspI	RCATGY	2 cut(s)	107, 574
PciI	ACATGT	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PctI	GAATGC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	691, 734
PkrI	GCNGC	2 cut(s)	170, 913
Ppu21I	YACGTR	1 cut(s)	1006
PscI	ACATGT	1 cut(s)	103
PspEI	GGTNACC	1 cut(s)	307
PspPI	GGNCC	3 cut(s)	98, 493, 821
PsuI	RGATCY	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	5 cut(s)	477, 767, 888, 976, 1008
RsaNI	GTAC	5 cut(s)	476, 766, 887, 975, 1007
RseI	CAYNNNNRTG	2 cut(s)	378, 524
SacII	CCGCGG	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	675
SaqAI	TTAA	2 cut(s)	627, 954
SatI	GCNGC	2 cut(s)	169, 912
Sau3AI	GATC	4 cut(s)	395, 587, 594, 1028
Sau96I	GGNCC	3 cut(s)	98, 493, 821
ScrFI	CCNGG	2 cut(s)	73, 74
SfaNI	GCATC	3 cut(s)	138, 722, 756
SfcI	CTRYAG	3 cut(s)	357, 699, 978
Sfr303I	CCGCGG	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	169
SinI	GGWCC	2 cut(s)	98, 821
SmaI	CCCGGG	1 cut(s)	74
SmiMI	CAYNNNNRTG	2 cut(s)	378, 524
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
SnaBI	TACGTA	1 cut(s)	1006
Sse9I	AATT	3 cut(s)	389, 420, 582
SsiI	CCGC	4 cut(s)	82, 156, 166, 168
StyD4I	CCNGG	2 cut(s)	71, 72
StyI	CCWWGG	2 cut(s)	222, 341
TaaI	ACNGT	3 cut(s)	214, 765, 886
TaiI	ACGT	1 cut(s)	1008
TaqI	TCGA	1 cut(s)	114
TaqII	GACCGA	1 cut(s)	821
TasI	AATT	3 cut(s)	389, 420, 582
TatI	WGTACW	3 cut(s)	475, 765, 886
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	691, 734
Tru1I	TTAA	2 cut(s)	627, 954
Tru9I	TTAA	2 cut(s)	627, 954
TscAI	CASTG	5 cut(s)	199, 217, 626, 715, 768
TseFI	GTSAC	2 cut(s)	307, 505
TseI	GCWGC	1 cut(s)	911
Tsp45I	GTSAC	2 cut(s)	307, 505
TspDTI	ATGAA	4 cut(s)	218, 390, 747, 1032
TspGWI	ACGGA	3 cut(s)	111, 460, 554
TspMI	CCCGGG	1 cut(s)	72
TspRI	CASTG	5 cut(s)	199, 217, 626, 715, 768
Vha464I	CTTAAG	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	98, 821
XceI	RCATGY	2 cut(s)	107, 574
XmaI	CCCGGG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.