Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007742.1

Orthogroup ID

OG0009291

Physical Location & Seq

Genomic Coordinates Forward (+)

126601 .. 129538

Gene Structure 2938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007742.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgatggggaagcaaacagaaggtgggttcaagttggagcagaggcacggcaaggctcgggtcagggtcgcccgggtttggcggaacaatcccgacggacgacatgtcatcgtcgaatggtgcgtcagcatcagcctcctctctgattgcctcaccgcttatacccgcggcgacaactccgatatcgtcgccactgacaccatgaagaacactgtgtatgcaaaggcgaaggaatgtgtggaacaagtttcggttgaagatttcgcagttctacttgcgaagcacttcacatctctttaccagcaggtcacctgtgccattgtaaacattgtcgagaagccatgggagcgtgtatctgtagatggtgaaacacatgaacatggtttcaaattaggatcggagaggcacacaacagaagtaattttagagaagtctggtgcattaaggatgacttctggtattgaaggactggctgtactgaagacaacaaaggtaatttcatccattccgcagttaatatttatgtttcaaaggcaaaaagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004846 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016491 GO:0016661 GO:0016663 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko00230 ko00232 ko01100 ko01120 map00230 map00232 map01100 map01120

Pfam Domains

Protein Families

Uricase

Protein Analysis

181

Amino Acids

20.29

Weight (kDa)

8.68

Isoelectric Point (pI)

19.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26230
fragaria_vesca	FvH4_7g03231 FvH4_7g03231
malus_domestica	MD02G1258600.v1.1 MD07G1062200.v1.1
prunus_persica	Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1 Prupe.2G072000_v2.0.a1
pyrus_communis	pycom02g21980 pycom07g04770
rosa_chinensis	RchiOBHm_Chr1g0325281 RchiOBHm_Chr1g0325311
rosa_laevigata	RLG00000030147
rosa_multiflora	Rmu_sc0007742.1_g000034 Rmu_sc0020800.1_g000011
rosa_roxburghii	Rroxscaffold_4G00324830
rosa_rugosa	Rorug01G0051200
rosa_samantha	Rh1AG066400 Rh1BG054500 Rh1CG067800 Rh1DG072600
rosa_wichuraiana	Rw1G005550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AccII	CGCG	1 cut(s)	168
AciI	CCGC	5 cut(s)	82, 156, 166, 168, 509
AclWI	GGATC	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	5 cut(s)	31, 257, 388, 464, 530
AhdI	GACNNNNNGTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	403
Ama87I	CYCGRG	2 cut(s)	57, 72
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
Asp700I	GAANNNNTTC	1 cut(s)	284
AsuC2I	CCSGG	2 cut(s)	73, 74
AsuHPI	GGTGA	3 cut(s)	145, 301, 377
AvaI	CYCGRG	2 cut(s)	57, 72
BbsI	GAAGAC	1 cut(s)	488
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	64
BcnI	CCSGG	2 cut(s)	73, 74
BfmI	CTRYAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	73, 74
BmeRI	GACNNNNNGTC	1 cut(s)	104
BmeT110I	CYCGRG	2 cut(s)	57, 72
BmrFI	CCNGG	2 cut(s)	73, 74
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	488
BpuMI	CCSGG	2 cut(s)	73, 74
BsaJI	CCNNGG	3 cut(s)	72, 166, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	474
BseDI	CCNNGG	3 cut(s)	72, 166, 341
BseGI	GGATG	2 cut(s)	453, 500
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	168
BsiHKCI	CYCGRG	2 cut(s)	57, 72
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	78
BsoBI	CYCGRG	2 cut(s)	57, 72
Bsp143I	GATC	1 cut(s)	395
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	5 cut(s)	82, 156, 166, 168, 509
BspFNI	CGCG	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	474
BssECI	CCNNGG	3 cut(s)	72, 166, 341
BssMI	GATC	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	214
BstDSI	CCRYGG	2 cut(s)	166, 341
BstEII	GGTNACC	1 cut(s)	307
BstF5I	GGATG	2 cut(s)	453, 500
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	398
BstMBI	GATC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNSI	RCATGY	1 cut(s)	107
BstPI	GGTNACC	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	71, 72
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	488
BtgI	CCRYGG	2 cut(s)	166, 341
BtsCI	GGATG	2 cut(s)	453, 500
BtsIMutI	CAGTG	2 cut(s)	192, 210
BveI	ACCTGC	1 cut(s)	295
Cfr42I	CCGCGG	1 cut(s)	169
Cfr9I	CCCGGG	1 cut(s)	72
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	5 cut(s)	104, 202, 342, 374, 380
CviJI	RGCY	4 cut(s)	56, 135, 340, 473
CviKI_1	RGCY	4 cut(s)	56, 135, 340, 473
CviQI	GTAC	1 cut(s)	476
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
DriI	GACNNNNNGTC	1 cut(s)	104
Eam1105I	GACNNNNNGTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	341
Eco32I	GATATC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	500
Eco88I	CYCGRG	2 cut(s)	57, 72
Eco91I	GGTNACC	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	5 cut(s)	107, 205, 345, 377, 383
FaiI	YATR	8 cut(s)	105, 162, 203, 219, 343, 375, 381, 524
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FatI	CATG	5 cut(s)	103, 201, 341, 373, 379
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	2 cut(s)	460, 487
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	5 cut(s)	107, 205, 345, 377, 383
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	3 cut(s)	145, 301, 377
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	145, 181, 400
Hpy188III	TCNNGA	2 cut(s)	92, 334
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	3 cut(s)	98, 116, 191
HpyAV	CCTTC	3 cut(s)	14, 223, 458
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	221, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
Hsp92II	CATG	5 cut(s)	107, 205, 345, 377, 383
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	395
LmnI	GCTCC	2 cut(s)	37, 346
LpnPI	CCDG	8 cut(s)	49, 86, 290, 314, 325, 420, 441, 455
LweI	GCATC	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MboII	GAAGA	3 cut(s)	217, 269, 493
MluCI	AATT	3 cut(s)	389, 420, 495
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	5 cut(s)	36, 146, 149, 161, 396
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	2 cut(s)	443, 515
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	73, 74
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	346
NciI	CCSGG	2 cut(s)	73, 74
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	1 cut(s)	395
NlaIII	CATG	5 cut(s)	107, 205, 345, 377, 383
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	107
PciI	ACATGT	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	170
PscI	ACATGT	1 cut(s)	103
PspEI	GGTNACC	1 cut(s)	307
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	378
SacII	CCGCGG	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	443, 515
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	1 cut(s)	395
ScrFI	CCNGG	2 cut(s)	73, 74
SetI	ASST	4 cut(s)	25, 309, 314, 495
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	1 cut(s)	357
Sfr303I	CCGCGG	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	169
SmaI	CCCGGG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	378
Sse9I	AATT	3 cut(s)	389, 420, 495
SsiI	CCGC	5 cut(s)	82, 156, 166, 168, 509
SspI	AATATT	1 cut(s)	519
StyD4I	CCNGG	2 cut(s)	71, 72
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	114, 333
TasI	AATT	3 cut(s)	389, 420, 495
TatI	WGTACW	1 cut(s)	475
TauI	GCSGC	1 cut(s)	171
Tru1I	TTAA	2 cut(s)	443, 515
Tru9I	TTAA	2 cut(s)	443, 515
TscAI	CASTG	2 cut(s)	199, 217
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	218, 390, 489
TspGWI	ACGGA	1 cut(s)	111
TspMI	CCCGGG	1 cut(s)	72
TspRI	CASTG	2 cut(s)	199, 217
XceI	RCATGY	1 cut(s)	107
XmaI	CCCGGG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.