E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G22010 AT2G22010 |
| fragaria_vesca | FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_7g04730 FvH4_7g04730 |
| malus_domestica | MD01G1017400.v1.1 MD15G1333600.v1.1 |
| prunus_persica | Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 |
| pyrus_communis | pycom01g04820 pycom01g04830 pycom15g29160 pycom15g29170 |
| rosa_chinensis | RchiOBHm_Chr2g0116231 |
| rosa_laevigata | RLG00000018249 |
| rosa_multiflora | Rmu_sc0003499.1_g000012 Rmu_sc0004888.1_g000064 |
| rosa_roxburghii | Rroxscaffold_2G00127410 |
| rosa_rugosa | Rorug02G0205000 |
| rosa_samantha | Rh2AG260600 Rh2BG271700 Rh2CG266800 Rh2DG268800 |
| rosa_wichuraiana | Rw2G020430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 530, 1697 |
| AarI | CACCTGC | 1 cut(s) | 433 |
| AatII | GACGTC | 1 cut(s) | 139 |
| Acc36I | ACCTGC | 2 cut(s) | 433, 1630 |
| AccB1I | GGYRCC | 1 cut(s) | 445 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 983 |
| AciI | CCGC | 2 cut(s) | 217, 967 |
| AclWI | GGATC | 5 cut(s) | 498, 704, 717, 1160, 1207 |
| AcsI | RAATTY | 6 cut(s) | 124, 146, 193, 315, 494, 1630 |
| AcuI | CTGAAG | 3 cut(s) | 840, 1065, 1545 |
| AcvI | CACGTG | 1 cut(s) | 1385 |
| AcyI | GRCGYC | 1 cut(s) | 136 |
| AdeI | CACNNNGTG | 2 cut(s) | 107, 250 |
| AfaI | GTAC | 2 cut(s) | 363, 1019 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 158, 590, 983, 1249, 1547 |
| AflII | CTTAAG | 1 cut(s) | 947 |
| AgsI | TTSAA | 9 cut(s) | 46, 158, 176, 521, 677, 689, 731, 993, 1081 |
| AjnI | CCWGG | 5 cut(s) | 398, 537, 757, 907, 982 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 111, 143 |
| AluBI | AGCT | 9 cut(s) | 560, 796, 812, 962, 1137, 1323, 1373, 1466, 1565 |
| AluI | AGCT | 9 cut(s) | 560, 796, 812, 962, 1137, 1323, 1373, 1466, 1565 |
| Alw21I | GWGCWC | 1 cut(s) | 654 |
| Alw26I | GTCTC | 3 cut(s) | 33, 280, 625 |
| AlwI | GGATC | 5 cut(s) | 498, 704, 717, 1160, 1207 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1499 |
| AoxI | GGCC | 1 cut(s) | 755 |
| ApeKI | GCWGC | 3 cut(s) | 214, 1311, 1314 |
| ApoI | RAATTY | 6 cut(s) | 124, 146, 193, 315, 494, 1630 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1584 |
| AspLEI | GCGC | 1 cut(s) | 1627 |
| AspS9I | GGNCC | 2 cut(s) | 404, 853 |
| AsuHPI | GGTGA | 2 cut(s) | 119, 657 |
| AvaII | GGWCC | 2 cut(s) | 404, 853 |
| BaeGI | GKGCMC | 2 cut(s) | 584, 1390 |
| BamHI | GGATCC | 1 cut(s) | 709 |
| BanI | GGYRCC | 1 cut(s) | 445 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 727, 759 |
| BbrPI | CACGTG | 1 cut(s) | 1385 |
| BbsI | GAAGAC | 1 cut(s) | 1551 |
| Bbv12I | GWGCWC | 1 cut(s) | 654 |
| BbvI | GCAGC | 3 cut(s) | 201, 1298, 1301 |
| BccI | CCATC | 3 cut(s) | 55, 1179, 1239 |
| BciT130I | CCWGG | 5 cut(s) | 400, 539, 759, 909, 984 |
| BciVI | GTATCC | 1 cut(s) | 1365 |
| BcoDI | GTCTC | 3 cut(s) | 33, 280, 625 |
| BfaI | CTAG | 5 cut(s) | 491, 1476, 1482, 1566, 1589 |
| BfmI | CTRYAG | 3 cut(s) | 807, 932, 1230 |
| BfrI | CTTAAG | 1 cut(s) | 947 |
| BfuAI | ACCTGC | 2 cut(s) | 433, 1630 |
| BfuI | GTATCC | 1 cut(s) | 1365 |
| BglII | AGATCT | 1 cut(s) | 1412 |
| BisI | GCNGC | 3 cut(s) | 215, 1312, 1315 |
| BlsI | GCNGC | 3 cut(s) | 216, 1313, 1316 |
| Bme1390I | CCNGG | 5 cut(s) | 400, 539, 759, 909, 984 |
| Bme18I | GGWCC | 2 cut(s) | 404, 853 |
| BmgT120I | GGNCC | 2 cut(s) | 404, 853 |
| BmiI | GGNNCC | 4 cut(s) | 405, 447, 711, 854 |
| BmrFI | CCNGG | 5 cut(s) | 400, 539, 759, 909, 984 |
| BmrI | ACTGGG | 2 cut(s) | 895, 1511 |
| BmsI | GCATC | 1 cut(s) | 729 |
| BmuI | ACTGGG | 2 cut(s) | 895, 1511 |
| BoxI | GACNNNNGTC | 1 cut(s) | 858 |
| BpiI | GAAGAC | 1 cut(s) | 1551 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 341, 373 |
| BpmI | CTGGAG | 1 cut(s) | 1005 |
| BpuEI | CTTGAG | 1 cut(s) | 1303 |
| BsaAI | YACGTR | 1 cut(s) | 1385 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1170 |
| BsaHI | GRCGYC | 1 cut(s) | 136 |
| BsaJI | CCNNGG | 3 cut(s) | 399, 537, 1541 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 360, 390 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 158, 590, 983, 1249, 1547 |
| Bse1I | ACTGG | 3 cut(s) | 901, 1142, 1517 |
| Bse3DI | GCAATG | 1 cut(s) | 1390 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1170 |
| BseBI | CCWGG | 5 cut(s) | 400, 539, 759, 909, 984 |
| BseDI | CCNNGG | 3 cut(s) | 399, 537, 1541 |
| BseGI | GGATG | 5 cut(s) | 77, 487, 778, 879, 1270 |
| BseJI | GATNNNNATC | 1 cut(s) | 1170 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 158, 590, 983, 1249, 1547 |
| BseMI | GCAATG | 1 cut(s) | 1390 |
| BseMII | CTCAG | 2 cut(s) | 620, 1585 |
| BseNI | ACTGG | 3 cut(s) | 901, 1142, 1517 |
| BseRI | GAGGAG | 3 cut(s) | 362, 854, 972 |
| BseSI | GKGCMC | 2 cut(s) | 584, 1390 |
| BseXI | GCAGC | 3 cut(s) | 201, 1298, 1301 |
| BshFI | GGCC | 1 cut(s) | 757 |
| BshNI | GGYRCC | 1 cut(s) | 445 |
| BsiHKAI | GWGCWC | 1 cut(s) | 654 |
| BslFI | GGGAC | 3 cut(s) | 123, 866, 1662 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 158, 590, 983, 1249, 1547 |
| BsmAI | GTCTC | 3 cut(s) | 33, 280, 625 |
| BsmBI | CGTCTC | 1 cut(s) | 625 |
| BsmFI | GGGAC | 3 cut(s) | 123, 866, 1662 |
| BsmI | GAATGC | 3 cut(s) | 41, 265, 1439 |
| BsnI | GGCC | 1 cut(s) | 757 |
| Bsp1286I | GDGCHC | 3 cut(s) | 584, 654, 1390 |
| Bsp1407I | TGTACA | 1 cut(s) | 1017 |
| Bsp143I | GATC | 6 cut(s) | 503, 709, 724, 1165, 1199, 1412 |
| BspACI | CCGC | 2 cut(s) | 217, 967 |
| BspANI | GGCC | 1 cut(s) | 757 |
| BspCNI | CTCAG | 2 cut(s) | 621, 1584 |
| BspHI | TCATGA | 1 cut(s) | 1099 |
| BspLI | GGNNCC | 4 cut(s) | 405, 447, 711, 854 |
| BspMAI | CTGCAG | 1 cut(s) | 1234 |
| BspMI | ACCTGC | 2 cut(s) | 433, 1630 |
| BspPI | GGATC | 5 cut(s) | 498, 704, 717, 1160, 1207 |
| BspT107I | GGYRCC | 1 cut(s) | 445 |
| BspTI | CTTAAG | 1 cut(s) | 947 |
| BsrDI | GCAATG | 1 cut(s) | 1390 |
| BsrGI | TGTACA | 1 cut(s) | 1017 |
| BsrI | ACTGG | 3 cut(s) | 901, 1142, 1517 |
| BssECI | CCNNGG | 3 cut(s) | 399, 537, 1541 |
| BssMI | GATC | 6 cut(s) | 503, 709, 724, 1165, 1199, 1412 |
| BssNI | GRCGYC | 1 cut(s) | 136 |
| BssT1I | CCWWGG | 1 cut(s) | 1541 |
| Bst2UI | CCWGG | 5 cut(s) | 400, 539, 759, 909, 984 |
| Bst4CI | ACNGT | 3 cut(s) | 114, 876, 1024 |
| BstACI | GRCGYC | 1 cut(s) | 136 |
| BstAFI | CTTAAG | 1 cut(s) | 947 |
| BstAUI | TGTACA | 1 cut(s) | 1017 |
| BstBAI | YACGTR | 1 cut(s) | 1385 |
| BstC8I | GCNNGC | 2 cut(s) | 258, 794 |
| BstDEI | CTNAG | 3 cut(s) | 629, 1157, 1571 |
| BstF5I | GGATG | 5 cut(s) | 77, 487, 778, 879, 1270 |
| BstHHI | GCGC | 1 cut(s) | 1627 |
| BstKTI | GATC | 6 cut(s) | 506, 712, 727, 1168, 1202, 1415 |
| BstMAI | GTCTC | 3 cut(s) | 33, 280, 625 |
| BstMBI | GATC | 6 cut(s) | 503, 709, 724, 1165, 1199, 1412 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 262, 1320 |
| BstNI | CCWGG | 5 cut(s) | 400, 539, 759, 909, 984 |
| BstNSI | RCATGY | 2 cut(s) | 546, 621 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 858 |
| BstSCI | CCNGG | 5 cut(s) | 398, 537, 757, 907, 982 |
| BstSFI | CTRYAG | 3 cut(s) | 807, 932, 1230 |
| BstSLI | GKGCMC | 2 cut(s) | 584, 1390 |
| BstV1I | GCAGC | 3 cut(s) | 201, 1298, 1301 |
| BstV2I | GAAGAC | 1 cut(s) | 1551 |
| BstX2I | RGATCY | 4 cut(s) | 503, 709, 1199, 1412 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 908 |
| BstYI | RGATCY | 4 cut(s) | 503, 709, 1199, 1412 |
| BsuI | GTATCC | 1 cut(s) | 1365 |
| BsuRI | GGCC | 1 cut(s) | 757 |
| BtsCI | GGATG | 5 cut(s) | 77, 487, 778, 879, 1270 |
| BtsI | GCAGTG | 2 cut(s) | 1093, 1444 |
| BtsIMutI | CAGTG | 4 cut(s) | 921, 1093, 1444, 1524 |
| BveI | ACCTGC | 2 cut(s) | 433, 1630 |
| Cac8I | GCNNGC | 2 cut(s) | 258, 794 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1499 |
| CciI | TCATGA | 1 cut(s) | 1099 |
| CfoI | GCGC | 1 cut(s) | 1627 |
| Cfr13I | GGNCC | 2 cut(s) | 404, 853 |
| Csp6I | GTAC | 2 cut(s) | 362, 1018 |
| CviQI | GTAC | 2 cut(s) | 362, 1018 |
| DdeI | CTNAG | 3 cut(s) | 629, 1157, 1571 |
| DpnI | GATC | 6 cut(s) | 505, 711, 726, 1167, 1201, 1414 |
| DpnII | GATC | 6 cut(s) | 503, 709, 724, 1165, 1199, 1412 |
| DraIII | CACNNNGTG | 2 cut(s) | 107, 250 |
| Eco130I | CCWWGG | 1 cut(s) | 1541 |
| Eco32I | GATATC | 2 cut(s) | 8, 1240 |
| Eco47I | GGWCC | 2 cut(s) | 404, 853 |
| Eco57I | CTGAAG | 3 cut(s) | 840, 1065, 1545 |
| Eco72I | CACGTG | 1 cut(s) | 1385 |
| EcoO109I | RGGNCCY | 1 cut(s) | 853 |
| EcoRII | CCWGG | 5 cut(s) | 398, 537, 757, 907, 982 |
| EcoRV | GATATC | 2 cut(s) | 8, 1240 |
| EcoT14I | CCWWGG | 1 cut(s) | 1541 |
| ErhI | CCWWGG | 1 cut(s) | 1541 |
| Esp3I | CGTCTC | 1 cut(s) | 625 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1569, 1601 |
| FaqI | GGGAC | 3 cut(s) | 123, 866, 1662 |
| Fnu4HI | GCNGC | 3 cut(s) | 215, 1312, 1315 |
| FokI | GGATG | 5 cut(s) | 84, 494, 785, 866, 1277 |
| Fsp4HI | GCNGC | 3 cut(s) | 215, 1312, 1315 |
| FspBI | CTAG | 5 cut(s) | 491, 1476, 1482, 1566, 1589 |
| GlaI | GCGC | 1 cut(s) | 1626 |
| GluI | GCNGC | 3 cut(s) | 215, 1312, 1315 |
| GsuI | CTGGAG | 1 cut(s) | 1005 |
| HaeIII | GGCC | 1 cut(s) | 757 |
| HhaI | GCGC | 1 cut(s) | 1627 |
| Hin1I | GRCGYC | 1 cut(s) | 136 |
| Hin6I | GCGC | 1 cut(s) | 1625 |
| HinP1I | GCGC | 1 cut(s) | 1625 |
| HincII | GTYRAC | 1 cut(s) | 801 |
| HindII | GTYRAC | 1 cut(s) | 801 |
| HinfI | GANTC | 3 cut(s) | 1285, 1496, 1569 |
| HphI | GGTGA | 2 cut(s) | 119, 657 |
| Hpy166II | GTNNAC | 5 cut(s) | 110, 134, 801, 1020, 1382 |
| Hpy188I | TCNGA | 7 cut(s) | 820, 1045, 1134, 1244, 1495, 1501, 1574 |
| Hpy188III | TCNNGA | 9 cut(s) | 308, 479, 491, 628, 702, 728, 922, 1100, 1589 |
| Hpy8I | GTNNAC | 5 cut(s) | 110, 134, 801, 1020, 1382 |
| Hpy99I | CGWCG | 1 cut(s) | 314 |
| HpyAV | CCTTC | 8 cut(s) | 152, 182, 683, 753, 950, 1040, 1075, 1247 |
| HpyCH4III | ACNGT | 3 cut(s) | 114, 876, 1024 |
| HpyCH4IV | ACGT | 2 cut(s) | 136, 1384 |
| HpyCH4V | TGCA | 8 cut(s) | 203, 244, 442, 552, 1232, 1395, 1437, 1522 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 262, 1320 |
| HpyF3I | CTNAG | 3 cut(s) | 629, 1157, 1571 |
| HpySE526I | ACGT | 2 cut(s) | 136, 1384 |
| Hsp92I | GRCGYC | 1 cut(s) | 136 |
| HspAI | GCGC | 1 cut(s) | 1625 |
| Kzo9I | GATC | 6 cut(s) | 503, 709, 724, 1165, 1199, 1412 |
| LmnI | GCTCC | 6 cut(s) | 253, 368, 381, 565, 959, 1134 |
| Lsp1109I | GCAGC | 3 cut(s) | 201, 1298, 1301 |
| LweI | GCATC | 1 cut(s) | 729 |
| MaeI | CTAG | 5 cut(s) | 491, 1476, 1482, 1566, 1589 |
| MaeII | ACGT | 2 cut(s) | 136, 1384 |
| MaeIII | GTNAC | 5 cut(s) | 663, 889, 1282, 1423, 1484 |
| MalI | GATC | 6 cut(s) | 505, 711, 726, 1167, 1201, 1414 |
| MboI | GATC | 6 cut(s) | 503, 709, 724, 1165, 1199, 1412 |
| MboII | GAAGA | 9 cut(s) | 261, 965, 1106, 1247, 1283, 1407, 1551, 1589, 1592 |
| MfeI | CAATTG | 2 cut(s) | 153, 209 |
| MflI | RGATCY | 4 cut(s) | 503, 709, 1199, 1412 |
| MhlI | GDGCHC | 3 cut(s) | 584, 654, 1390 |
| MlyI | GAGTC | 2 cut(s) | 1279, 1563 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1584 |
| MseI | TTAA | 8 cut(s) | 122, 191, 498, 828, 948, 1292, 1635, 1664 |
| MslI | CAYNNNNRTG | 3 cut(s) | 616, 1122, 1176 |
| MspCI | CTTAAG | 1 cut(s) | 947 |
| MspR9I | CCNGG | 5 cut(s) | 400, 539, 759, 909, 984 |
| MunI | CAATTG | 2 cut(s) | 153, 209 |
| Mva1269I | GAATGC | 3 cut(s) | 41, 265, 1439 |
| MvaI | CCWGG | 5 cut(s) | 400, 539, 759, 909, 984 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 262, 1320 |
| NdeII | GATC | 6 cut(s) | 503, 709, 724, 1165, 1199, 1412 |
| NlaIV | GGNNCC | 4 cut(s) | 405, 447, 711, 854 |
| NmuCI | GTSAC | 3 cut(s) | 663, 889, 1282 |
| NspI | RCATGY | 2 cut(s) | 546, 621 |
| PagI | TCATGA | 1 cut(s) | 1099 |
| PaqCI | CACCTGC | 1 cut(s) | 433 |
| PctI | GAATGC | 3 cut(s) | 41, 265, 1439 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1584 |
| PfeI | GAWTC | 1 cut(s) | 1496 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 983 |
| PfoI | TCCNGGA | 1 cut(s) | 982 |
| PkrI | GCNGC | 3 cut(s) | 216, 1313, 1316 |
| PleI | GAGTC | 2 cut(s) | 1279, 1563 |
| PmaCI | CACGTG | 1 cut(s) | 1385 |
| PmlI | CACGTG | 1 cut(s) | 1385 |
| PpsI | GAGTC | 2 cut(s) | 1279, 1563 |
| Ppu21I | YACGTR | 1 cut(s) | 1385 |
| PpuMI | RGGWCCY | 1 cut(s) | 853 |
| PshAI | GACNNNNGTC | 1 cut(s) | 858 |
| PsiI | TTATAA | 2 cut(s) | 530, 1697 |
| Psp5II | RGGWCCY | 1 cut(s) | 853 |
| Psp6I | CCWGG | 5 cut(s) | 398, 537, 757, 907, 982 |
| PspCI | CACGTG | 1 cut(s) | 1385 |
| PspGI | CCWGG | 5 cut(s) | 398, 537, 757, 907, 982 |
| PspN4I | GGNNCC | 4 cut(s) | 405, 447, 711, 854 |
| PspPI | GGNCC | 2 cut(s) | 404, 853 |
| PspPPI | RGGWCCY | 1 cut(s) | 853 |
| PstI | CTGCAG | 1 cut(s) | 1234 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1499 |
| PsuI | RGATCY | 4 cut(s) | 503, 709, 1199, 1412 |
| RsaI | GTAC | 2 cut(s) | 363, 1019 |
| RsaNI | GTAC | 2 cut(s) | 362, 1018 |
| RseI | CAYNNNNRTG | 3 cut(s) | 616, 1122, 1176 |
| SaqAI | TTAA | 8 cut(s) | 122, 191, 498, 828, 948, 1292, 1635, 1664 |
| SatI | GCNGC | 3 cut(s) | 215, 1312, 1315 |
| Sau3AI | GATC | 6 cut(s) | 503, 709, 724, 1165, 1199, 1412 |
| Sau96I | GGNCC | 2 cut(s) | 404, 853 |
| SchI | GAGTC | 2 cut(s) | 1279, 1563 |
| ScrFI | CCNGG | 5 cut(s) | 400, 539, 759, 909, 984 |
| SduI | GDGCHC | 3 cut(s) | 584, 654, 1390 |
| SfaNI | GCATC | 1 cut(s) | 729 |
| SfcI | CTRYAG | 3 cut(s) | 807, 932, 1230 |
| SinI | GGWCC | 2 cut(s) | 404, 853 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 616, 1122, 1176 |
| SmlI | CTYRAG | 2 cut(s) | 947, 1318 |
| SmoI | CTYRAG | 2 cut(s) | 947, 1318 |
| SsiI | CCGC | 2 cut(s) | 217, 967 |
| SspMI | CTAG | 5 cut(s) | 491, 1476, 1482, 1566, 1589 |
| StyD4I | CCNGG | 5 cut(s) | 398, 537, 757, 907, 982 |
| StyI | CCWWGG | 1 cut(s) | 1541 |
| TaaI | ACNGT | 3 cut(s) | 114, 876, 1024 |
| TaiI | ACGT | 2 cut(s) | 139, 1387 |
| TaqI | TCGA | 1 cut(s) | 1174 |
| TatI | WGTACW | 2 cut(s) | 361, 1017 |
| TfiI | GAWTC | 1 cut(s) | 1496 |
| Tru1I | TTAA | 8 cut(s) | 122, 191, 498, 828, 948, 1292, 1635, 1664 |
| Tru9I | TTAA | 8 cut(s) | 122, 191, 498, 828, 948, 1292, 1635, 1664 |
| TscAI | CASTG | 4 cut(s) | 921, 1093, 1444, 1524 |
| TseFI | GTSAC | 3 cut(s) | 663, 889, 1282 |
| TseI | GCWGC | 3 cut(s) | 214, 1311, 1314 |
| Tsp45I | GTSAC | 3 cut(s) | 663, 889, 1282 |
| TspDTI | ATGAA | 7 cut(s) | 409, 753, 868, 1022, 1106, 1284, 1678 |
| TspGWI | ACGGA | 2 cut(s) | 174, 396 |
| TspRI | CASTG | 4 cut(s) | 921, 1093, 1444, 1524 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 983 |
| Vha464I | CTTAAG | 1 cut(s) | 947 |
| VpaK11BI | GGWCC | 2 cut(s) | 404, 853 |
| XapI | RAATTY | 6 cut(s) | 124, 146, 193, 315, 494, 1630 |
| XbaI | TCTAGA | 2 cut(s) | 490, 1588 |
| XceI | RCATGY | 2 cut(s) | 546, 621 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1584 |
| XspI | CTAG | 5 cut(s) | 491, 1476, 1482, 1566, 1589 |
| ZraI | GACGTC | 1 cut(s) | 137 |