FvH4_7g04730

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
5182443 .. 5186343
3901 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04730.t2

Sequence Viewer

Length: 1704 bp
ATGAGATATCATTTTACAGAAATGGTGTCTCTTGGTTTGGCATTCAATGGTATTCGTAAGATGGGAGTGGGATGTGGATATTATCCTGCTGTATCTCTCTCACAAGGTGAACGGTGCGAATTAAATTTTGGTGGACGTCCCTCTAAATTTCCAATTGAAGGCTACCACCCCCTTCAATCCCCTCCGTCCTTAAATTTTTTTGCAACTCAATTGCTGCGGTGCTTGTCAAGGCTGTTGGGTTTGCACTCTGTGGAGCAGGCAAAGCATTCTTCTGTTGAGAAATTGAGACTGAAAAGGTTTGTTTCTCCCGACGAAATTTTCTATCCTGTTTCTCATGGGATATGCGAGGAGTTTTTCTCTGTACTTGGAGCAGATGTTTGGAGCATAGAGTATGTTGCCTGGGGTCCGTTTTTGTCGTTCATGGTGGAAGCGTTTGGGTTGCAGGTGCCACATGATTATTCAGGCTTGGATAGAGTTCTGGATGTCTTTCTAGAATTTAATAGATCCCACTTGTTGTTTGAACATATTATAAATGCCCTGGCATGTGGTTGCAAAACAGCTCCATTAGTTCTCAAAGAGTGCCCATGTTCAGGGTCATATCCATATCTCGCATTGGCATGTCATATCCTGAGACGACAAGAACTTATGGTGCTCTGGTGGAAGTCACCTGATTTTGAATACCATTTTGAAGGTTTCCTATCACGAAAGGATCCAAATAAGAACGATCTTGAATGTATGATGCCTTCTGTTTGGTGGCCTGGTTCATGTGAGGATGTGTCCTACGAAAGTAGCAAGCTGTTGACGACTACAGCTTTATCTGAAGCAGTTAATAAGATTGAGGAGAAGCATAGGGACCTCTGTCGCTTGGTCATACAGTTCATCCCACCTGTGACACCTCCCCAGTTTCCTGGTTCAGTGTTCAGGACATTTCTACAGAACCTTCTACTTAAGAACAGAGGAGCTGACCGCAATCTTCCACCTCCTGGAGTTTCAAGCAATTCTGTTCTCGTTTCTTTGTACACAGTCATACTTCATTTTCTATCTGAAGGGTTTGGAATGGGGGAAATATGTGGTTGGTTGAAGGGCAGTGAAAATGGTCATGATGTTGGTTTTCTTCATAGGGGTGGTCATCGGAGCTTTCCAGTAGGTCTATTTCTTAGAAATGATCCCCATCGAAATGACAATACGAGGCTTGGAGGATCTTTTAGTCATCTCTCAAAATCACACCCTGCAGAAGATATCCGATGGGAGGAAGGTTGTATGGATGATGAAGAAACCAGAGTGACTCATTTAAGTATAAGAAAACCATGCTGCTGCTCAAGCTATGACGAGGATTTCACAAGAACCTCAAAGTATCCAATTAGATACACAGCTAAAGGTTCACGTGCCCATTGCAGTTCCATGCCAGAGAGATCTTCCCATGTTACCACAGAATGCAGTGCTGGAAGTTTGAGTGATGATATAGCTGATAAACCTAGTTCTAGTTACCAATCAGAATCTGATTTTAGTTATTGCCCAGTGCAACATACGAGTTTTATACCAAGGGAGGGTGTTATGTCTTCAGCTAGACTCAGAGAAGAAGAACTTCTAGATGTTTTATTGTTGTTGTATCATATAGGTCTTGCGCCAAATTTTAAGCAGGTAAGGGGACATATTTCTATATTAAAGAATACAAACTGCCACTTATTCATTTTTATAATCTAA

Protein Analysis

568

Amino Acids

64.07

Weight (kDa)

6.41

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 530, 1697
AarI CACCTGC 1 cut(s) 433
AatII GACGTC 1 cut(s) 139
Acc36I ACCTGC 2 cut(s) 433, 1630
AccB1I GGYRCC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 983
AciI CCGC 2 cut(s) 217, 967
AclWI GGATC 5 cut(s) 498, 704, 717, 1160, 1207
AcsI RAATTY 6 cut(s) 124, 146, 193, 315, 494, 1630
AcuI CTGAAG 3 cut(s) 840, 1065, 1545
AcvI CACGTG 1 cut(s) 1385
AcyI GRCGYC 1 cut(s) 136
AdeI CACNNNGTG 2 cut(s) 107, 250
AfaI GTAC 2 cut(s) 363, 1019
AfiI CCNNNNNNNGG 5 cut(s) 158, 590, 983, 1249, 1547
AflII CTTAAG 1 cut(s) 947
AgsI TTSAA 9 cut(s) 46, 158, 176, 521, 677, 689, 731, 993, 1081
AjnI CCWGG 5 cut(s) 398, 537, 757, 907, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 9 cut(s) 560, 796, 812, 962, 1137, 1323, 1373, 1466, 1565
AluI AGCT 9 cut(s) 560, 796, 812, 962, 1137, 1323, 1373, 1466, 1565
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 3 cut(s) 33, 280, 625
AlwI GGATC 5 cut(s) 498, 704, 717, 1160, 1207
AlwNI CAGNNNCTG 1 cut(s) 1499
AoxI GGCC 1 cut(s) 755
ApeKI GCWGC 3 cut(s) 214, 1311, 1314
ApoI RAATTY 6 cut(s) 124, 146, 193, 315, 494, 1630
Asp700I GAANNNNTTC 1 cut(s) 1584
AspLEI GCGC 1 cut(s) 1627
AspS9I GGNCC 2 cut(s) 404, 853
AsuHPI GGTGA 2 cut(s) 119, 657
AvaII GGWCC 2 cut(s) 404, 853
BaeGI GKGCMC 2 cut(s) 584, 1390
BamHI GGATCC 1 cut(s) 709
BanI GGYRCC 1 cut(s) 445
BarI GAAGNNNNNNTAC 2 cut(s) 727, 759
BbrPI CACGTG 1 cut(s) 1385
BbsI GAAGAC 1 cut(s) 1551
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 3 cut(s) 201, 1298, 1301
BccI CCATC 3 cut(s) 55, 1179, 1239
BciT130I CCWGG 5 cut(s) 400, 539, 759, 909, 984
BciVI GTATCC 1 cut(s) 1365
BcoDI GTCTC 3 cut(s) 33, 280, 625
BfaI CTAG 5 cut(s) 491, 1476, 1482, 1566, 1589
BfmI CTRYAG 3 cut(s) 807, 932, 1230
BfrI CTTAAG 1 cut(s) 947
BfuAI ACCTGC 2 cut(s) 433, 1630
BfuI GTATCC 1 cut(s) 1365
BglII AGATCT 1 cut(s) 1412
BisI GCNGC 3 cut(s) 215, 1312, 1315
BlsI GCNGC 3 cut(s) 216, 1313, 1316
Bme1390I CCNGG 5 cut(s) 400, 539, 759, 909, 984
Bme18I GGWCC 2 cut(s) 404, 853
BmgT120I GGNCC 2 cut(s) 404, 853
BmiI GGNNCC 4 cut(s) 405, 447, 711, 854
BmrFI CCNGG 5 cut(s) 400, 539, 759, 909, 984
BmrI ACTGGG 2 cut(s) 895, 1511
BmsI GCATC 1 cut(s) 729
BmuI ACTGGG 2 cut(s) 895, 1511
BoxI GACNNNNGTC 1 cut(s) 858
BpiI GAAGAC 1 cut(s) 1551
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 1 cut(s) 1005
BpuEI CTTGAG 1 cut(s) 1303
BsaAI YACGTR 1 cut(s) 1385
BsaBI GATNNNNATC 1 cut(s) 1170
BsaHI GRCGYC 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 399, 537, 1541
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 590, 983, 1249, 1547
Bse1I ACTGG 3 cut(s) 901, 1142, 1517
Bse3DI GCAATG 1 cut(s) 1390
Bse8I GATNNNNATC 1 cut(s) 1170
BseBI CCWGG 5 cut(s) 400, 539, 759, 909, 984
BseDI CCNNGG 3 cut(s) 399, 537, 1541
BseGI GGATG 5 cut(s) 77, 487, 778, 879, 1270
BseJI GATNNNNATC 1 cut(s) 1170
BseLI CCNNNNNNNGG 5 cut(s) 158, 590, 983, 1249, 1547
BseMI GCAATG 1 cut(s) 1390
BseMII CTCAG 2 cut(s) 620, 1585
BseNI ACTGG 3 cut(s) 901, 1142, 1517
BseRI GAGGAG 3 cut(s) 362, 854, 972
BseSI GKGCMC 2 cut(s) 584, 1390
BseXI GCAGC 3 cut(s) 201, 1298, 1301
BshFI GGCC 1 cut(s) 757
BshNI GGYRCC 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 654
BslFI GGGAC 3 cut(s) 123, 866, 1662
BslI CCNNNNNNNGG 5 cut(s) 158, 590, 983, 1249, 1547
BsmAI GTCTC 3 cut(s) 33, 280, 625
BsmBI CGTCTC 1 cut(s) 625
BsmFI GGGAC 3 cut(s) 123, 866, 1662
BsmI GAATGC 3 cut(s) 41, 265, 1439
BsnI GGCC 1 cut(s) 757
Bsp1286I GDGCHC 3 cut(s) 584, 654, 1390
Bsp1407I TGTACA 1 cut(s) 1017
Bsp143I GATC 6 cut(s) 503, 709, 724, 1165, 1199, 1412
BspACI CCGC 2 cut(s) 217, 967
BspANI GGCC 1 cut(s) 757
BspCNI CTCAG 2 cut(s) 621, 1584
BspHI TCATGA 1 cut(s) 1099
BspLI GGNNCC 4 cut(s) 405, 447, 711, 854
BspMAI CTGCAG 1 cut(s) 1234
BspMI ACCTGC 2 cut(s) 433, 1630
BspPI GGATC 5 cut(s) 498, 704, 717, 1160, 1207
BspT107I GGYRCC 1 cut(s) 445
BspTI CTTAAG 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 1390
BsrGI TGTACA 1 cut(s) 1017
BsrI ACTGG 3 cut(s) 901, 1142, 1517
BssECI CCNNGG 3 cut(s) 399, 537, 1541
BssMI GATC 6 cut(s) 503, 709, 724, 1165, 1199, 1412
BssNI GRCGYC 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 1541
Bst2UI CCWGG 5 cut(s) 400, 539, 759, 909, 984
Bst4CI ACNGT 3 cut(s) 114, 876, 1024
BstACI GRCGYC 1 cut(s) 136
BstAFI CTTAAG 1 cut(s) 947
BstAUI TGTACA 1 cut(s) 1017
BstBAI YACGTR 1 cut(s) 1385
BstC8I GCNNGC 2 cut(s) 258, 794
BstDEI CTNAG 3 cut(s) 629, 1157, 1571
BstF5I GGATG 5 cut(s) 77, 487, 778, 879, 1270
BstHHI GCGC 1 cut(s) 1627
BstKTI GATC 6 cut(s) 506, 712, 727, 1168, 1202, 1415
BstMAI GTCTC 3 cut(s) 33, 280, 625
BstMBI GATC 6 cut(s) 503, 709, 724, 1165, 1199, 1412
BstMWI GCNNNNNNNGC 2 cut(s) 262, 1320
BstNI CCWGG 5 cut(s) 400, 539, 759, 909, 984
BstNSI RCATGY 2 cut(s) 546, 621
BstPAI GACNNNNGTC 1 cut(s) 858
BstSCI CCNGG 5 cut(s) 398, 537, 757, 907, 982
BstSFI CTRYAG 3 cut(s) 807, 932, 1230
BstSLI GKGCMC 2 cut(s) 584, 1390
BstV1I GCAGC 3 cut(s) 201, 1298, 1301
BstV2I GAAGAC 1 cut(s) 1551
BstX2I RGATCY 4 cut(s) 503, 709, 1199, 1412
BstXI CCANNNNNNTGG 1 cut(s) 908
BstYI RGATCY 4 cut(s) 503, 709, 1199, 1412
BsuI GTATCC 1 cut(s) 1365
BsuRI GGCC 1 cut(s) 757
BtsCI GGATG 5 cut(s) 77, 487, 778, 879, 1270
BtsI GCAGTG 2 cut(s) 1093, 1444
BtsIMutI CAGTG 4 cut(s) 921, 1093, 1444, 1524
BveI ACCTGC 2 cut(s) 433, 1630
Cac8I GCNNGC 2 cut(s) 258, 794
CaiI CAGNNNCTG 1 cut(s) 1499
CciI TCATGA 1 cut(s) 1099
CfoI GCGC 1 cut(s) 1627
Cfr13I GGNCC 2 cut(s) 404, 853
Csp6I GTAC 2 cut(s) 362, 1018
CviQI GTAC 2 cut(s) 362, 1018
DdeI CTNAG 3 cut(s) 629, 1157, 1571
DpnI GATC 6 cut(s) 505, 711, 726, 1167, 1201, 1414
DpnII GATC 6 cut(s) 503, 709, 724, 1165, 1199, 1412
DraIII CACNNNGTG 2 cut(s) 107, 250
Eco130I CCWWGG 1 cut(s) 1541
Eco32I GATATC 2 cut(s) 8, 1240
Eco47I GGWCC 2 cut(s) 404, 853
Eco57I CTGAAG 3 cut(s) 840, 1065, 1545
Eco72I CACGTG 1 cut(s) 1385
EcoO109I RGGNCCY 1 cut(s) 853
EcoRII CCWGG 5 cut(s) 398, 537, 757, 907, 982
EcoRV GATATC 2 cut(s) 8, 1240
EcoT14I CCWWGG 1 cut(s) 1541
ErhI CCWWGG 1 cut(s) 1541
Esp3I CGTCTC 1 cut(s) 625
FalI AAGNNNNNCTT 2 cut(s) 1569, 1601
FaqI GGGAC 3 cut(s) 123, 866, 1662
Fnu4HI GCNGC 3 cut(s) 215, 1312, 1315
FokI GGATG 5 cut(s) 84, 494, 785, 866, 1277
Fsp4HI GCNGC 3 cut(s) 215, 1312, 1315
FspBI CTAG 5 cut(s) 491, 1476, 1482, 1566, 1589
GlaI GCGC 1 cut(s) 1626
GluI GCNGC 3 cut(s) 215, 1312, 1315
GsuI CTGGAG 1 cut(s) 1005
HaeIII GGCC 1 cut(s) 757
HhaI GCGC 1 cut(s) 1627
Hin1I GRCGYC 1 cut(s) 136
Hin6I GCGC 1 cut(s) 1625
HinP1I GCGC 1 cut(s) 1625
HincII GTYRAC 1 cut(s) 801
HindII GTYRAC 1 cut(s) 801
HinfI GANTC 3 cut(s) 1285, 1496, 1569
HphI GGTGA 2 cut(s) 119, 657
Hpy166II GTNNAC 5 cut(s) 110, 134, 801, 1020, 1382
Hpy188I TCNGA 7 cut(s) 820, 1045, 1134, 1244, 1495, 1501, 1574
Hpy188III TCNNGA 9 cut(s) 308, 479, 491, 628, 702, 728, 922, 1100, 1589
Hpy8I GTNNAC 5 cut(s) 110, 134, 801, 1020, 1382
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 8 cut(s) 152, 182, 683, 753, 950, 1040, 1075, 1247
HpyCH4III ACNGT 3 cut(s) 114, 876, 1024
HpyCH4IV ACGT 2 cut(s) 136, 1384
HpyCH4V TGCA 8 cut(s) 203, 244, 442, 552, 1232, 1395, 1437, 1522
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 1320
HpyF3I CTNAG 3 cut(s) 629, 1157, 1571
HpySE526I ACGT 2 cut(s) 136, 1384
Hsp92I GRCGYC 1 cut(s) 136
HspAI GCGC 1 cut(s) 1625
Kzo9I GATC 6 cut(s) 503, 709, 724, 1165, 1199, 1412
LmnI GCTCC 6 cut(s) 253, 368, 381, 565, 959, 1134
Lsp1109I GCAGC 3 cut(s) 201, 1298, 1301
LweI GCATC 1 cut(s) 729
MaeI CTAG 5 cut(s) 491, 1476, 1482, 1566, 1589
MaeII ACGT 2 cut(s) 136, 1384
MaeIII GTNAC 5 cut(s) 663, 889, 1282, 1423, 1484
MalI GATC 6 cut(s) 505, 711, 726, 1167, 1201, 1414
MboI GATC 6 cut(s) 503, 709, 724, 1165, 1199, 1412
MboII GAAGA 9 cut(s) 261, 965, 1106, 1247, 1283, 1407, 1551, 1589, 1592
MfeI CAATTG 2 cut(s) 153, 209
MflI RGATCY 4 cut(s) 503, 709, 1199, 1412
MhlI GDGCHC 3 cut(s) 584, 654, 1390
MlyI GAGTC 2 cut(s) 1279, 1563
MroXI GAANNNNTTC 1 cut(s) 1584
MseI TTAA 8 cut(s) 122, 191, 498, 828, 948, 1292, 1635, 1664
MslI CAYNNNNRTG 3 cut(s) 616, 1122, 1176
MspCI CTTAAG 1 cut(s) 947
MspR9I CCNGG 5 cut(s) 400, 539, 759, 909, 984
MunI CAATTG 2 cut(s) 153, 209
Mva1269I GAATGC 3 cut(s) 41, 265, 1439
MvaI CCWGG 5 cut(s) 400, 539, 759, 909, 984
MwoI GCNNNNNNNGC 2 cut(s) 262, 1320
NdeII GATC 6 cut(s) 503, 709, 724, 1165, 1199, 1412
NlaIV GGNNCC 4 cut(s) 405, 447, 711, 854
NmuCI GTSAC 3 cut(s) 663, 889, 1282
NspI RCATGY 2 cut(s) 546, 621
PagI TCATGA 1 cut(s) 1099
PaqCI CACCTGC 1 cut(s) 433
PctI GAATGC 3 cut(s) 41, 265, 1439
PdmI GAANNNNTTC 1 cut(s) 1584
PfeI GAWTC 1 cut(s) 1496
PflMI CCANNNNNTGG 1 cut(s) 983
PfoI TCCNGGA 1 cut(s) 982
PkrI GCNGC 3 cut(s) 216, 1313, 1316
PleI GAGTC 2 cut(s) 1279, 1563
PmaCI CACGTG 1 cut(s) 1385
PmlI CACGTG 1 cut(s) 1385
PpsI GAGTC 2 cut(s) 1279, 1563
Ppu21I YACGTR 1 cut(s) 1385
PpuMI RGGWCCY 1 cut(s) 853
PshAI GACNNNNGTC 1 cut(s) 858
PsiI TTATAA 2 cut(s) 530, 1697
Psp5II RGGWCCY 1 cut(s) 853
Psp6I CCWGG 5 cut(s) 398, 537, 757, 907, 982
PspCI CACGTG 1 cut(s) 1385
PspGI CCWGG 5 cut(s) 398, 537, 757, 907, 982
PspN4I GGNNCC 4 cut(s) 405, 447, 711, 854
PspPI GGNCC 2 cut(s) 404, 853
PspPPI RGGWCCY 1 cut(s) 853
PstI CTGCAG 1 cut(s) 1234
PstNI CAGNNNCTG 1 cut(s) 1499
PsuI RGATCY 4 cut(s) 503, 709, 1199, 1412
RsaI GTAC 2 cut(s) 363, 1019
RsaNI GTAC 2 cut(s) 362, 1018
RseI CAYNNNNRTG 3 cut(s) 616, 1122, 1176
SaqAI TTAA 8 cut(s) 122, 191, 498, 828, 948, 1292, 1635, 1664
SatI GCNGC 3 cut(s) 215, 1312, 1315
Sau3AI GATC 6 cut(s) 503, 709, 724, 1165, 1199, 1412
Sau96I GGNCC 2 cut(s) 404, 853
SchI GAGTC 2 cut(s) 1279, 1563
ScrFI CCNGG 5 cut(s) 400, 539, 759, 909, 984
SduI GDGCHC 3 cut(s) 584, 654, 1390
SfaNI GCATC 1 cut(s) 729
SfcI CTRYAG 3 cut(s) 807, 932, 1230
SinI GGWCC 2 cut(s) 404, 853
SmiMI CAYNNNNRTG 3 cut(s) 616, 1122, 1176
SmlI CTYRAG 2 cut(s) 947, 1318
SmoI CTYRAG 2 cut(s) 947, 1318
SsiI CCGC 2 cut(s) 217, 967
SspMI CTAG 5 cut(s) 491, 1476, 1482, 1566, 1589
StyD4I CCNGG 5 cut(s) 398, 537, 757, 907, 982
StyI CCWWGG 1 cut(s) 1541
TaaI ACNGT 3 cut(s) 114, 876, 1024
TaiI ACGT 2 cut(s) 139, 1387
TaqI TCGA 1 cut(s) 1174
TatI WGTACW 2 cut(s) 361, 1017
TfiI GAWTC 1 cut(s) 1496
Tru1I TTAA 8 cut(s) 122, 191, 498, 828, 948, 1292, 1635, 1664
Tru9I TTAA 8 cut(s) 122, 191, 498, 828, 948, 1292, 1635, 1664
TscAI CASTG 4 cut(s) 921, 1093, 1444, 1524
TseFI GTSAC 3 cut(s) 663, 889, 1282
TseI GCWGC 3 cut(s) 214, 1311, 1314
Tsp45I GTSAC 3 cut(s) 663, 889, 1282
TspDTI ATGAA 7 cut(s) 409, 753, 868, 1022, 1106, 1284, 1678
TspGWI ACGGA 2 cut(s) 174, 396
TspRI CASTG 4 cut(s) 921, 1093, 1444, 1524
Van91I CCANNNNNTGG 1 cut(s) 983
Vha464I CTTAAG 1 cut(s) 947
VpaK11BI GGWCC 2 cut(s) 404, 853
XapI RAATTY 6 cut(s) 124, 146, 193, 315, 494, 1630
XbaI TCTAGA 2 cut(s) 490, 1588
XceI RCATGY 2 cut(s) 546, 621
XmnI GAANNNNTTC 1 cut(s) 1584
XspI CTAG 5 cut(s) 491, 1476, 1482, 1566, 1589
ZraI GACGTC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.