Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002142

Physical Location & Seq

Genomic Coordinates Forward (+)

4110444 .. 4117249

Gene Structure 6806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATGATTTTACAAGAATCTCAAATTATCCAATTGGATACAAAGCCAAAGGCATCGTATTACATGTCTCACCAGTCACAGTCAATATCCCTCATGGAAGAAGCTGATAAACAAATAAGAGAAAAAGCTTGCAGTGAGCAATTAAAGCGTTTGAAAGAAGCTCGTAATGGTTATAGAGAAGAAGTTATTGATTGTGTCAGACAATGTGCTTGGTACCGTATTTCTCTGTTTTCTCGATGGAAGCAAAGAGGAATGTATGCAACATGCATGTGGACTGTCCAGTTGCTTTTGGTTCTTACCAAAGTCGATCTGCTGTTCCTTTATATCCCTGAATATTATCTGGAAGCTCTTGTCGATTGCTTTCATGTGTTGCGCAAAAGTGATCCACCATTTGTACCTTCATCAATATTTATCAAGCAAGGCCTTGCTTCATTTGTCACTTTTGTGGTCACGCACTTCAACGATCCCCGGATATCAAGTGCAGATCTTAGGGATCTGCTTCTCCAATCAATCTCAGTCTTGGTACAGTACAAAGAATATCTGTCCGTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0060154 GO:0065007 GO:0070647 GO:0071704 GO:0098586 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPRY Ufd2P_core zf-C3HC4_3

Protein Analysis

185

Amino Acids

21.64

Weight (kDa)

8.23

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22010 AT2G22010
fragaria_vesca	FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_7g04730 FvH4_7g04730
malus_domestica	MD01G1017400.v1.1 MD15G1333600.v1.1
prunus_persica	Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1
pyrus_communis	pycom01g04820 pycom01g04830 pycom15g29160 pycom15g29170
rosa_chinensis	RchiOBHm_Chr2g0116231
rosa_laevigata	RLG00000018249
rosa_multiflora	Rmu_sc0003499.1_g000012 Rmu_sc0004888.1_g000064
rosa_roxburghii	Rroxscaffold_2G00127410
rosa_rugosa	Rorug02G0205000
rosa_samantha	Rh2AG260600 Rh2BG271700 Rh2CG266800 Rh2DG268800
rosa_wichuraiana	Rw2G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	374
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	213
AclWI	GGATC	3 cut(s)	377, 458, 501
AfaI	GTAC	4 cut(s)	215, 396, 525, 530
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	154, 460
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	4 cut(s)	104, 128, 161, 347
AluI	AGCT	4 cut(s)	104, 128, 161, 347
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	3 cut(s)	377, 458, 501
AoxI	GGCC	1 cut(s)	421
Asp718I	GGTACC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	375
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	213
BccI	CCATC	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	31
BglII	AGATCT	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	467
Bse1I	ACTGG	2 cut(s)	73, 280
BseDI	CCNNGG	1 cut(s)	467
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	2 cut(s)	73, 280
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	423
BshNI	GGYRCC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	423
Bsp143I	GATC	5 cut(s)	307, 382, 463, 484, 493
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	1 cut(s)	527
BspLI	GGNNCC	1 cut(s)	215
BspPI	GGATC	3 cut(s)	377, 458, 501
BspT107I	GGYRCC	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	73, 280
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	5 cut(s)	307, 382, 463, 484, 493
Bst4CI	ACNGT	4 cut(s)	81, 218, 277, 528
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	488, 514
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	5 cut(s)	310, 385, 466, 487, 496
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	5 cut(s)	307, 382, 463, 484, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNSI	RCATGY	3 cut(s)	67, 267, 271
BstSCI	CCNGG	1 cut(s)	467
BstX2I	RGATCY	2 cut(s)	484, 493
BstYI	RGATCY	2 cut(s)	484, 493
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	423
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	375
Csp6I	GTAC	4 cut(s)	214, 395, 524, 529
CviAII	CATG	5 cut(s)	64, 94, 264, 268, 365
CviJI	RGCY	6 cut(s)	46, 104, 128, 161, 347, 423
CviKI_1	RGCY	6 cut(s)	46, 104, 128, 161, 347, 423
CviQI	GTAC	4 cut(s)	214, 395, 524, 529
DdeI	CTNAG	2 cut(s)	488, 514
DpnI	GATC	5 cut(s)	309, 384, 465, 486, 495
DpnII	GATC	5 cut(s)	307, 382, 463, 484, 493
Eco147I	AGGCCT	1 cut(s)	423
Eco32I	GATATC	1 cut(s)	474
EcoRV	GATATC	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	269
FaeI	CATG	5 cut(s)	67, 97, 267, 271, 368
FaiI	YATR	8 cut(s)	65, 95, 174, 258, 265, 269, 324, 366
FatI	CATG	5 cut(s)	63, 93, 263, 267, 364
FspI	TGCGCA	1 cut(s)	374
GlaI	GCGC	1 cut(s)	374
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	1 cut(s)	469
HhaI	GCGC	1 cut(s)	375
Hin1II	CATG	5 cut(s)	67, 97, 267, 271, 368
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	469
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	2 cut(s)	234, 341
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	1 cut(s)	408
HpyCH4III	ACNGT	4 cut(s)	81, 218, 277, 528
HpyCH4V	TGCA	4 cut(s)	132, 260, 267, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	488, 514
Hsp92II	CATG	5 cut(s)	67, 97, 267, 271, 368
HspAI	GCGC	1 cut(s)	373
KpnI	GGTACC	1 cut(s)	217
Kzo9I	GATC	5 cut(s)	307, 382, 463, 484, 493
LpnPI	CCDG	5 cut(s)	86, 293, 326, 342, 482
LweI	GCATC	1 cut(s)	62
MaeIII	GTNAC	3 cut(s)	75, 436, 448
MalI	GATC	5 cut(s)	309, 384, 465, 486, 495
MboI	GATC	5 cut(s)	307, 382, 463, 484, 493
MboII	GAAGA	2 cut(s)	110, 191
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	2 cut(s)	484, 493
MluCI	AATT	3 cut(s)	24, 32, 140
MnlI	CCTC	2 cut(s)	101, 242
Mph1103I	ATGCAT	1 cut(s)	269
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	2 cut(s)	268, 443
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	469
MunI	CAATTG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	5 cut(s)	307, 382, 463, 484, 493
NlaIII	CATG	5 cut(s)	67, 97, 267, 271, 368
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	3 cut(s)	75, 436, 448
NsbI	TGCGCA	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	269
NspI	RCATGY	3 cut(s)	67, 267, 271
OliI	CACNNNNGTG	1 cut(s)	443
PceI	AGGCCT	1 cut(s)	423
PciI	ACATGT	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	17
PscI	ACATGT	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	484, 493
RsaI	GTAC	4 cut(s)	215, 396, 525, 530
RsaNI	GTAC	4 cut(s)	214, 395, 524, 529
RseI	CAYNNNNRTG	2 cut(s)	268, 443
SaqAI	TTAA	1 cut(s)	143
Sau3AI	GATC	5 cut(s)	307, 382, 463, 484, 493
ScrFI	CCNGG	1 cut(s)	469
SetI	ASST	5 cut(s)	106, 130, 163, 349, 400
SfaNI	GCATC	1 cut(s)	62
SmiMI	CAYNNNNRTG	2 cut(s)	268, 443
Sse9I	AATT	3 cut(s)	24, 32, 140
SseBI	AGGCCT	1 cut(s)	423
SspI	AATATT	2 cut(s)	335, 408
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	467
TaaI	ACNGT	4 cut(s)	81, 218, 277, 528
TaqI	TCGA	3 cut(s)	235, 306, 354
TasI	AATT	3 cut(s)	24, 32, 140
TatI	WGTACW	1 cut(s)	528
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	3 cut(s)	75, 436, 448
Tsp45I	GTSAC	3 cut(s)	75, 436, 448
TspDTI	ATGAA	3 cut(s)	353, 390, 420
TspGWI	ACGGA	1 cut(s)	535
TspRI	CASTG	1 cut(s)	139
XceI	RCATGY	3 cut(s)	67, 267, 271
Zsp2I	ATGCAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.