Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002142

Physical Location & Seq

Genomic Coordinates Forward (+)

29426362 .. 29435874

Gene Structure 9513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG271700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3339 bp

ATGGCGGAAGACGGCCTACGGTTAGGTGGGCCTTCTTCTGGTCTGTTCTTGATATTGAATGGTGAGGACAGCAAAGAGAATTCGTCGAAATCCCATCGTGTTTCATCATGTGATGAGCTCGGTTACCAATCAGTGGAGCGAACCTTGGAATATGTATTTGGTCTCCCTAACAGATCAATCGGTTCGTTGTCTGGGCCAGTTGATGGGAATCTAGTTCGCGGTATTTTGAAGAATGAGTTCTCGAAATTACATGCAAATTCAAGTGCTTTGGATGGAGACAGAGACGGCATTTCCATTTCTGGGAATGGCTGCAGACCCTACACCGTTGGTCTTAATAAAATCAGTATCCGGGGTGATATTAGCATCGTTAAGCCACCTTTGCTTGTAGAGAGCTTAGCAATGTTCAGCAGTGCTAGGGCTAACGCTTCTGTTTGGAAAGGAAAATGGATGTATGAAGTTGTTCTGGAAACTGCAGGGATTCAGCAGCTTGGATGGGCTACTGTTTCTTGCCCTTTCACTGACCATAAGGGTGTAGGTGATGCTGATGATTCATATGCGTTTGATGGGAGGAGGGTTAGAAAATGGAACAAGGATGCTGAGTCATATGGTCAGTCATGGGTTGTTGGTGATGCTATTGGATGCTGCATAGATTTGGACTGTAATGAAATATCATTCTACAGAAATGGTGTCTCTCTTGGTTTGGCATTCCATGGTATTCGTAAGATGGGACCAGGATGTGGATATTATCCTGCAGTTTCTCTCTCACAAGGTGAACGATGTGAATTAAATTTTGGTGGCCGTCCCTTTAAATTTTCGATTGAAGGCTACCAGCCCCTTCAAGCACCTCCTCCTTTAAATTTGTTTGCAACTCAGTTGCTGCAGTGCTTGTCAAGGCTGTTGGGTTTGCACTCTGTGGAGCAGGCAAAACATTCTTCTGTTGAGAAATTGAGACTGAAGAGGTTTGTTTCTCCTGACGAAATTTTTTATCCTGCTTCTCAGGGGATATGTGAGGAACTTTTATCTGTACTTGGAGCTGATGTTTGGAGCATAGAGTATGTTGCCTGGGGTCCGTTTTTGTCATTCATGGTGGAAGTGTTTGGATTGCAGGCGCCACATGATTATTCAGGCTTAGATAGAGTTCTGGATGTCTTTCTAGAATTTAATAGATCACACTTGTTGTTTGAACATATTATAAATGCCCTGGCATGTGGTTGCAAAACAGCCACATTGGTTCTCAAAGAGTGCCCATGGTCAGGGTCATATCCATACCTTGCATTGGCATGTCATATCCTGAGACGGCAGGAACTTATGGTGCTCTGGTGGAAATCACCTGATTTTGAATACCATTTTGAAAGGTTCCTATCACGAAAGGATCCAAATAAGAATGATCTGGAATCCATGATGCCTTCTGTTTGGTGGCCTGGTTCATGTGAGGATGTGTCCTACGAAAGTAGCATGCTGTTGACGACTACAGCTTTATCTGAAGCTGTTAGTAAGATTGAGGAGAAGCATAGGGACCTCTGTCGCTTGGTCATACAGTTCATACCACCTGTGACACCTCCCCAGTTGCCTGGTTCAGTGTTTAGGACATTTCTACAGAACCTTCTACTAAAGAACAGAGGAGCTGACCGCAATCTTCCACCTCCTGGAGTTTCAAGCAATTCTGTTCTTGTTTCTTTGTACACAGTTATACTTCATTTTTTATCTGAAGGGTTTGGAATGGGGGAAATATGCGGTTGGTTGAAGCACAGTGAAAAAGGTCGTGATGTTGGTTTTCTTCATAGGGGTGGTCATCGAAGCTTTCCAGTAGGTTTATTTCTTAGAAATGATCCTCATCGAAATGACAATACCAGGCTTGGAGGATCTTTTAGTCATCTCTCAAAATCACACCCAGTAGATGATCAGGAAGCAGAAGATATCCGGTGGGAGGAAGGTTGTATGGATGATGAAGAAACGAGAGTGACTCATCTAAGTACAAGAAAACCATGCTGCTGCTCAAGTTACGACGAGGATTTTACAAGAATCTCAAAGAATCCAATTAGATACACAGCTAAAGGTTCCCGTGCCCATTGCAGTCCCATGCCAGAGAGATCTTCCCATGTTACTACAGAATGCAGTGCTGGAAGTTTGAGTGATGATATGGCTGATAAACCTAGTTCTAGCTACCAATCTGAATCTGATTTTAGTTATTGCCCGGTGCAACATACGAGTTTTGTACCAAGGGAGGGTATTATGTCGTCAGCTACGCTCAGAGAAGAAGAACTTCTAGATGTTCTATTGCTGTTGTATCATATAGGTCTTGCGCCAAATTTTAAGCAGGCATCATATTACATGAATCACCAGTTGCAGTCAATTGCCAATCTTGAAGAAACTGATAAAAAAATTCGAGAAGGACCTTGTTTTGAGCAATTGAAGCATTTGAAAGAAGCTCGTAATGTTCATAGAGAAGAGGTTATTGATTCTGTAAGACAATGCGCTTGGTACCGTATCTCCCTATCCTCTAGATGGAAGCAAAGAGGAATGTATGCAACATGCATGTGGACTGTTCAGTTGCTTCTTGTCCTTAGCAAAGTGGATTTGTTGTTCACTTATGTCCCTGAATACTATCTTGAAGCTCTGGTTGATTGCTTTCATGTGTTGCGCAAGTGTGATCCTCCATTTGTCCCTTCATCAATATTTATCAAGCAAGGCCTTGCTTCATTTATCACCTTTGTGGTTACGCATTTCAACGACCCTCGAATATCTAGTGCAGATCTTAGGGATCTGCTTCTCCAATCCATTTCGGTCTTGGTACAATACAAAGAATATTTGGCTGCGTTTGAGAGCAATGAAGCAGCGAAACAGAGGATGCCAAAAGCATTGCTGTCAGCATTTGATAATAGATCCTGGATCCCAGTAACGAACATTCTTCTGCGTTTGTGCAAGGGATCTGGGTTTGGCTCATCAAAGCATGGAGAATCATCGTCATCATCCATCATCTTCCAGAGGTTGTTAGGGCAAGCTTGCATCAGTGATGAAGGGTTGTTCTCGGCTTTTCTCAATCGCCTGTTTAACACTCTCAGTTGGACAATGACTGAATTCTCAGTTTCTGTTAGAGAAATGCAAGAAAAGTACCAGGTATGGATAATCTCGTTCCTACTAGGGCATGCATATGTTCTTGTTATTGTATATTGCCTACTTTACCCATATCACTATCATCATGAGACCCGTAATGTGCATCTGGGAAGAAGAAAAAAATTCCCTGCTTGCACAAATCCTCTGATAGTGCCTTGGTTGGTGCAGTCTTACTGGATTAGGTCCATGTACAATAGCATGCAAATCTGTGGTCAGTACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0060154 GO:0065007 GO:0070647 GO:0071704 GO:0098586 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPRY Ufd2P_core zf-C3HC4_3

Protein Analysis

1112

Amino Acids

125.53

Weight (kDa)

6.53

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RKP_N	PF19322	1 - 137	3e-56	E3 ubiquitin-protein ligase RKP N-terminus
SPRY	PF00622	148 - 266	9e-30	SPRY domain
TPR_RNF123	PF25576	1010 - 1039	4.2e-11	RNF123-like, TPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22010 AT2G22010
fragaria_vesca	FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_7g04730 FvH4_7g04730
malus_domestica	MD01G1017400.v1.1 MD15G1333600.v1.1
prunus_persica	Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1
pyrus_communis	pycom01g04820 pycom01g04830 pycom15g29160 pycom15g29170
rosa_chinensis	RchiOBHm_Chr2g0116231
rosa_laevigata	RLG00000018249
rosa_multiflora	Rmu_sc0003499.1_g000012 Rmu_sc0004888.1_g000064
rosa_roxburghii	Rroxscaffold_2G00127410
rosa_rugosa	Rorug02G0205000
rosa_samantha	Rh2AG260600 Rh2BG271700 Rh2CG266800 Rh2DG268800
rosa_wichuraiana	Rw2G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1193
Acc16I	TGCGCA	1 cut(s)	2642
Acc65I	GGTACC	1 cut(s)	2481
AccB1I	GGYRCC	2 cut(s)	1108, 2481
AccB7I	CCANNNNNTGG	4 cut(s)	133, 203, 737, 1646
AccII	CGCG	1 cut(s)	219
AciI	CCGC	4 cut(s)	5, 219, 1630, 1734
AcoI	YGGCCR	1 cut(s)	796
AcuI	CTGAAG	3 cut(s)	974, 1503, 1728
AcyI	GRCGYC	1 cut(s)	1109
AdeI	CACNNNGTG	2 cut(s)	770, 913
AfaI	GTAC	9 cut(s)	1026, 1682, 1975, 2217, 2483, 2793, 3113, 3305, 3332
AjnI	CCWGG	9 cut(s)	730, 1061, 1200, 1420, 1570, 1645, 1850, 2885, 3114
AjuI	GAANNNNNNNTTGG	4 cut(s)	141, 173, 774, 806
AleI	CACNNNNGTG	1 cut(s)	2711
AloI	GAACNNNNNNTCC	2 cut(s)	2567, 2599
Alw21I	GWGCWC	2 cut(s)	120, 1317
Alw26I	GTCTC	7 cut(s)	167, 270, 276, 694, 943, 1288, 3197
AlwNI	CAGNNNCTG	2 cut(s)	877, 3089
AoxI	GGCC	6 cut(s)	13, 29, 194, 796, 1418, 2689
ApeKI	GCWGC	8 cut(s)	309, 484, 642, 877, 1989, 1992, 2813, 2834
ArsI	GACNNNNNNTTYG	1 cut(s)	3310
Asp700I	GAANNNNTTC	3 cut(s)	236, 459, 2262
Asp718I	GGTACC	1 cut(s)	2481
AspLEI	GCGC	4 cut(s)	1111, 2305, 2477, 2643
AspS9I	GGNCC	7 cut(s)	29, 194, 728, 1067, 1516, 2393, 3297
AsuC2I	CCSGG	2 cut(s)	350, 2195
AsuHPI	GGTGA	8 cut(s)	74, 365, 548, 638, 782, 1320, 2330, 2698
AvaII	GGWCC	5 cut(s)	728, 1067, 1516, 2393, 3297
BaeGI	GKGCMC	2 cut(s)	1247, 2068
BamHI	GGATCC	2 cut(s)	1372, 2889
BanI	GGYRCC	2 cut(s)	1108, 2481
BanII	GRGCYC	1 cut(s)	120
BarI	GAAGNNNNNNTAC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	120, 1317
BbvI	GCAGC	8 cut(s)	296, 496, 629, 864, 1976, 1979, 2800, 2846
BccI	CCATC	8 cut(s)	102, 197, 266, 486, 557, 718, 2499, 2981
BceAI	ACGGC	4 cut(s)	28, 301, 783, 1313
BciT130I	CCWGG	9 cut(s)	732, 1063, 1202, 1422, 1572, 1647, 1852, 2887, 3116
BciVI	GTATCC	1 cut(s)	356
BclI	TGATCA	1 cut(s)	1900
BcnI	CCSGG	2 cut(s)	350, 2195
BcoDI	GTCTC	7 cut(s)	167, 270, 276, 694, 943, 1288, 3197
BfaI	CTAG	9 cut(s)	212, 414, 1154, 2154, 2160, 2267, 2502, 2745, 3140
BfmI	CTRYAG	8 cut(s)	310, 471, 676, 750, 878, 1470, 1595, 2106
BfoI	RGCGCY	1 cut(s)	1112
BfuI	GTATCC	1 cut(s)	356
BglII	AGATCT	2 cut(s)	2090, 2752
BisI	GCNGC	8 cut(s)	310, 485, 643, 878, 1990, 1993, 2814, 2835
BlpI	GCTNAGC	1 cut(s)	394
BlsI	GCNGC	8 cut(s)	311, 486, 644, 879, 1991, 1994, 2815, 2836
Bme18I	GGWCC	5 cut(s)	728, 1067, 1516, 2393, 3297
BmgT120I	GGNCC	7 cut(s)	29, 194, 728, 1067, 1516, 2393, 3297
BmiI	GGNNCC	9 cut(s)	729, 1068, 1110, 1358, 1374, 1517, 2059, 2483, 2891
BmrI	ACTGGG	3 cut(s)	1558, 1886, 2888
BmuI	ACTGGG	3 cut(s)	1558, 1886, 2888
BoxI	GACNNNNGTC	1 cut(s)	1521
BpiI	GAAGAC	1 cut(s)	15
BplI	GAGNNNNNCTC	2 cut(s)	1948, 1980
BpmI	CTGGAG	1 cut(s)	1668
Bpu10I	CCTNAGC	1 cut(s)	2564
Bpu1102I	GCTNAGC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	1981
BpuMI	CCSGG	2 cut(s)	350, 2195
BsaBI	GATNNNNATC	2 cut(s)	207, 1833
BsaHI	GRCGYC	1 cut(s)	1109
BsaI	GGTCTC	2 cut(s)	167, 3197
BsaJI	CCNNGG	8 cut(s)	144, 349, 709, 1062, 1200, 1247, 2219, 3269
BsaWI	WCCGGW	1 cut(s)	1920
BsaXI	ACNNNNNCTCC	4 cut(s)	1023, 1053, 2474, 2504
Bse1I	ACTGG	7 cut(s)	197, 1564, 1805, 1892, 2341, 2894, 3293
Bse3DI	GCAATG	4 cut(s)	405, 2068, 2833, 2858
Bse8I	GATNNNNATC	2 cut(s)	207, 1833
BseBI	CCWGG	9 cut(s)	732, 1063, 1202, 1422, 1572, 1647, 1852, 2887, 3116
BseDI	CCNNGG	8 cut(s)	144, 349, 709, 1062, 1200, 1247, 2219, 3269
BseJI	GATNNNNATC	2 cut(s)	207, 1833
BseMI	GCAATG	4 cut(s)	405, 2068, 2833, 2858
BseMII	CTCAG	7 cut(s)	588, 884, 1010, 1283, 2263, 3073, 3096
BseNI	ACTGG	7 cut(s)	197, 1564, 1805, 1892, 2341, 2894, 3293
BseRI	GAGGAG	4 cut(s)	583, 837, 1517, 1635
BseSI	GKGCMC	2 cut(s)	1247, 2068
BseXI	GCAGC	8 cut(s)	296, 496, 629, 864, 1976, 1979, 2800, 2846
BsgI	GTGCAG	2 cut(s)	2769, 3299
Bsh1236I	CGCG	1 cut(s)	219
BshFI	GGCC	6 cut(s)	15, 31, 196, 798, 1420, 2691
BshNI	GGYRCC	2 cut(s)	1108, 2481
BsiHKAI	GWGCWC	2 cut(s)	120, 1317
BsiSI	CCGG	3 cut(s)	349, 1921, 2195
BslFI	GGGAC	6 cut(s)	741, 786, 1529, 2061, 2579, 2648
BsmAI	GTCTC	7 cut(s)	167, 270, 276, 694, 943, 1288, 3197
BsmBI	CGTCTC	2 cut(s)	276, 1288
BsmFI	GGGAC	6 cut(s)	741, 786, 1529, 2061, 2579, 2648
BsmI	GAATGC	2 cut(s)	704, 2117
BsnI	GGCC	6 cut(s)	15, 31, 196, 798, 1420, 2691
Bso31I	GGTCTC	2 cut(s)	167, 3197
Bsp1286I	GDGCHC	4 cut(s)	120, 1247, 1317, 2068
Bsp1407I	TGTACA	2 cut(s)	1680, 3303
Bsp1720I	GCTNAGC	1 cut(s)	394
Bsp19I	CCATGG	2 cut(s)	709, 1247
BspACI	CCGC	4 cut(s)	5, 219, 1630, 1734
BspANI	GGCC	6 cut(s)	15, 31, 196, 798, 1420, 2691
BspCNI	CTCAG	7 cut(s)	589, 883, 1009, 1284, 2262, 3072, 3095
BspFNI	CGCG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	3199
BspLI	GGNNCC	9 cut(s)	729, 1068, 1110, 1358, 1374, 1517, 2059, 2483, 2891
BspMAI	CTGCAG	4 cut(s)	314, 475, 754, 882
BspT107I	GGYRCC	2 cut(s)	1108, 2481
BspTNI	GGTCTC	2 cut(s)	167, 3197
BsrDI	GCAATG	4 cut(s)	405, 2068, 2833, 2858
BsrGI	TGTACA	2 cut(s)	1680, 3303
BsrI	ACTGG	7 cut(s)	197, 1564, 1805, 1892, 2341, 2894, 3293
BssECI	CCNNGG	8 cut(s)	144, 349, 709, 1062, 1200, 1247, 2219, 3269
BssNI	GRCGYC	1 cut(s)	1109
BssT1I	CCWWGG	5 cut(s)	144, 709, 1247, 2219, 3269
Bst2UI	CCWGG	9 cut(s)	732, 1063, 1202, 1422, 1572, 1647, 1852, 2887, 3116
Bst4CI	ACNGT	9 cut(s)	21, 325, 502, 659, 1539, 1687, 1751, 2486, 2545
Bst6I	CTCTTC	2 cut(s)	950, 2442
BstACI	GRCGYC	1 cut(s)	1109
BstAUI	TGTACA	2 cut(s)	1680, 3303
BstC8I	GCNNGC	9 cut(s)	921, 1107, 1457, 2319, 3000, 3004, 3147, 3247, 3314
BstDSI	CCRYGG	2 cut(s)	709, 1247
BstEII	GGTNACC	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	1112
BstHHI	GCGC	4 cut(s)	1111, 2305, 2477, 2643
BstMAI	GTCTC	7 cut(s)	167, 270, 276, 694, 943, 1288, 3197
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 2413
BstNI	CCWGG	9 cut(s)	732, 1063, 1202, 1422, 1572, 1647, 1852, 2887, 3116
BstNSI	RCATGY	8 cut(s)	254, 1209, 1284, 1459, 2535, 2539, 3149, 3316
BstPAI	GACNNNNGTC	1 cut(s)	1521
BstPI	GGTNACC	1 cut(s)	122
BstSFI	CTRYAG	8 cut(s)	310, 471, 676, 750, 878, 1470, 1595, 2106
BstSLI	GKGCMC	2 cut(s)	1247, 2068
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	8 cut(s)	296, 496, 629, 864, 1976, 1979, 2800, 2846
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	8 cut(s)	1372, 1862, 2090, 2752, 2761, 2882, 2889, 2927
BstXI	CCANNNNNNTGG	1 cut(s)	1571
BstYI	RGATCY	8 cut(s)	1372, 1862, 2090, 2752, 2761, 2882, 2889, 2927
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	6 cut(s)	15, 31, 196, 798, 1420, 2691
BtgI	CCRYGG	2 cut(s)	709, 1247
BtsI	GCAGTG	3 cut(s)	415, 887, 2122
BtsIMutI	CAGTG	8 cut(s)	138, 415, 516, 887, 1584, 1756, 2122, 3016
Cac8I	GCNNGC	9 cut(s)	921, 1107, 1457, 2319, 3000, 3004, 3147, 3247, 3314
CaiI	CAGNNNCTG	2 cut(s)	877, 3089
CciI	TCATGA	1 cut(s)	3199
CfoI	GCGC	4 cut(s)	1111, 2305, 2477, 2643
Cfr13I	GGNCC	7 cut(s)	29, 194, 728, 1067, 1516, 2393, 3297
CsiI	ACCWGGT	1 cut(s)	3114
Csp6I	GTAC	9 cut(s)	1025, 1681, 1974, 2216, 2482, 2792, 3112, 3304, 3331
CviQI	GTAC	9 cut(s)	1025, 1681, 1974, 2216, 2482, 2792, 3112, 3304, 3331
DinI	GGCGCC	1 cut(s)	1110
DraI	TTTAAA	2 cut(s)	808, 855
DraIII	CACNNNGTG	2 cut(s)	770, 913
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	2 cut(s)	950, 2442
EarI	CTCTTC	2 cut(s)	950, 2442
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	5 cut(s)	144, 709, 1247, 2219, 3269
Eco147I	AGGCCT	1 cut(s)	2691
Eco24I	GRGCYC	1 cut(s)	120
Eco31I	GGTCTC	2 cut(s)	167, 3197
Eco32I	GATATC	1 cut(s)	1918
Eco47I	GGWCC	5 cut(s)	728, 1067, 1516, 2393, 3297
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	3 cut(s)	974, 1503, 1728
Eco91I	GGTNACC	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	2 cut(s)	1516, 2393
EcoO65I	GGTNACC	1 cut(s)	122
EcoRI	GAATTC	2 cut(s)	79, 3077
EcoRII	CCWGG	9 cut(s)	730, 1061, 1200, 1420, 1570, 1645, 1850, 2885, 3114
EcoRV	GATATC	1 cut(s)	1918
EcoT14I	CCWWGG	5 cut(s)	144, 709, 1247, 2219, 3269
EcoT22I	ATGCAT	2 cut(s)	2537, 3151
EcoT38I	GRGCYC	1 cut(s)	120
EgeI	GGCGCC	1 cut(s)	1110
EheI	GGCGCC	1 cut(s)	1110
ErhI	CCWWGG	5 cut(s)	144, 709, 1247, 2219, 3269
Esp3I	CGTCTC	2 cut(s)	276, 1288
FalI	AAGNNNNNCTT	2 cut(s)	2247, 2279
FaqI	GGGAC	6 cut(s)	741, 786, 1529, 2061, 2579, 2648
FauNDI	CATATG	3 cut(s)	553, 604, 3151
FbaI	TGATCA	1 cut(s)	1900
Fnu4HI	GCNGC	8 cut(s)	310, 485, 643, 878, 1990, 1993, 2814, 2835
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	8 cut(s)	310, 485, 643, 878, 1990, 1993, 2814, 2835
FspBI	CTAG	9 cut(s)	212, 414, 1154, 2154, 2160, 2267, 2502, 2745, 3140
FspI	TGCGCA	1 cut(s)	2642
GlaI	GCGC	4 cut(s)	1110, 2304, 2476, 2642
GluI	GCNGC	8 cut(s)	310, 485, 643, 878, 1990, 1993, 2814, 2835
GsuI	CTGGAG	1 cut(s)	1668
HaeII	RGCGCY	1 cut(s)	1112
HaeIII	GGCC	6 cut(s)	15, 31, 196, 798, 1420, 2691
HapII	CCGG	3 cut(s)	349, 1921, 2195
HhaI	GCGC	4 cut(s)	1111, 2305, 2477, 2643
Hin1I	GRCGYC	1 cut(s)	1109
Hin6I	GCGC	4 cut(s)	1109, 2303, 2475, 2641
HinP1I	GCGC	4 cut(s)	1109, 2303, 2475, 2641
HincII	GTYRAC	1 cut(s)	1464
HindII	GTYRAC	1 cut(s)	1464
HindIII	AAGCTT	2 cut(s)	1798, 3000
HpaII	CCGG	3 cut(s)	349, 1921, 2195
HphI	GGTGA	8 cut(s)	74, 365, 548, 638, 782, 1320, 2330, 2698
Hpy166II	GTNNAC	5 cut(s)	773, 1464, 1683, 2541, 2586
Hpy188I	TCNGA	6 cut(s)	1483, 1708, 2173, 2179, 2252, 3261
Hpy8I	GTNNAC	5 cut(s)	773, 1464, 1683, 2541, 2586
Hpy99I	CGWCG	2 cut(s)	88, 2009
HpyCH4III	ACNGT	9 cut(s)	21, 325, 502, 659, 1539, 1687, 1751, 2486, 2545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 2413
Hsp92I	GRCGYC	1 cut(s)	1109
HspAI	GCGC	4 cut(s)	1109, 2303, 2475, 2641
KasI	GGCGCC	1 cut(s)	1108
KpnI	GGTACC	1 cut(s)	2485
Ksp22I	TGATCA	1 cut(s)	1900
LmnI	GCTCC	5 cut(s)	136, 916, 1031, 1044, 1622
Lsp1109I	GCAGC	8 cut(s)	296, 496, 629, 864, 1976, 1979, 2800, 2846
MabI	ACCWGGT	1 cut(s)	3114
MaeI	CTAG	9 cut(s)	212, 414, 1154, 2154, 2160, 2267, 2502, 2745, 3140
MaeIII	GTNAC	7 cut(s)	122, 1552, 1960, 2000, 2101, 2716, 2896
MfeI	CAATTG	2 cut(s)	2352, 2408
MflI	RGATCY	8 cut(s)	1372, 1862, 2090, 2752, 2761, 2882, 2889, 2927
MhlI	GDGCHC	4 cut(s)	120, 1247, 1317, 2068
Mly113I	GGCGCC	1 cut(s)	1109
MlyI	GAGTC	2 cut(s)	608, 1957
MmeI	TCCRAC	1 cut(s)	3044
Mph1103I	ATGCAT	2 cut(s)	2537, 3151
MroXI	GAANNNNTTC	3 cut(s)	236, 459, 2262
MseI	TTAA	8 cut(s)	333, 369, 785, 807, 854, 1161, 2313, 3051
MslI	CAYNNNNRTG	7 cut(s)	528, 1279, 1785, 1839, 2536, 2711, 3150
MspI	CCGG	3 cut(s)	349, 1921, 2195
MunI	CAATTG	2 cut(s)	2352, 2408
Mva1269I	GAATGC	2 cut(s)	704, 2117
MvaI	CCWGG	9 cut(s)	732, 1063, 1202, 1422, 1572, 1647, 1852, 2887, 3116
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	379, 2413
NarI	GGCGCC	1 cut(s)	1109
NciI	CCSGG	2 cut(s)	350, 2195
NcoI	CCATGG	2 cut(s)	709, 1247
NdeI	CATATG	3 cut(s)	553, 604, 3151
NlaIV	GGNNCC	9 cut(s)	729, 1068, 1110, 1358, 1374, 1517, 2059, 2483, 2891
NmeAIII	GCCGAG	1 cut(s)	3008
NmuCI	GTSAC	2 cut(s)	1552, 1960
NsbI	TGCGCA	1 cut(s)	2642
NsiI	ATGCAT	2 cut(s)	2537, 3151
NspI	RCATGY	8 cut(s)	254, 1209, 1284, 1459, 2535, 2539, 3149, 3316
OliI	CACNNNNGTG	1 cut(s)	2711
PaeI	GCATGC	3 cut(s)	1459, 3149, 3316
PagI	TCATGA	1 cut(s)	3199
PceI	AGGCCT	1 cut(s)	2691
PctI	GAATGC	2 cut(s)	704, 2117
PdmI	GAANNNNTTC	3 cut(s)	236, 459, 2262
PflMI	CCANNNNNTGG	4 cut(s)	133, 203, 737, 1646
PfoI	TCCNGGA	2 cut(s)	1645, 2885
PkrI	GCNGC	8 cut(s)	311, 486, 644, 879, 1991, 1994, 2815, 2836
PleI	GAGTC	2 cut(s)	607, 1957
PluTI	GGCGCC	1 cut(s)	1112
PpsI	GAGTC	2 cut(s)	607, 1957
PpuMI	RGGWCCY	2 cut(s)	1516, 2393
PshAI	GACNNNNGTC	1 cut(s)	1521
PsiI	TTATAA	1 cut(s)	1193
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	2 cut(s)	1516, 2393
Psp6I	CCWGG	9 cut(s)	730, 1061, 1200, 1420, 1570, 1645, 1850, 2885, 3114
PspEI	GGTNACC	1 cut(s)	122
PspGI	CCWGG	9 cut(s)	730, 1061, 1200, 1420, 1570, 1645, 1850, 2885, 3114
PspN4I	GGNNCC	9 cut(s)	729, 1068, 1110, 1358, 1374, 1517, 2059, 2483, 2891
PspPI	GGNCC	7 cut(s)	29, 194, 728, 1067, 1516, 2393, 3297
PspPPI	RGGWCCY	2 cut(s)	1516, 2393
PstI	CTGCAG	4 cut(s)	314, 475, 754, 882
PstNI	CAGNNNCTG	2 cut(s)	877, 3089
PsuI	RGATCY	8 cut(s)	1372, 1862, 2090, 2752, 2761, 2882, 2889, 2927
RsaI	GTAC	9 cut(s)	1026, 1682, 1975, 2217, 2483, 2793, 3113, 3305, 3332
RsaNI	GTAC	9 cut(s)	1025, 1681, 1974, 2216, 2482, 2792, 3112, 3304, 3331
RseI	CAYNNNNRTG	7 cut(s)	528, 1279, 1785, 1839, 2536, 2711, 3150
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	8 cut(s)	333, 369, 785, 807, 854, 1161, 2313, 3051
SatI	GCNGC	8 cut(s)	310, 485, 643, 878, 1990, 1993, 2814, 2835
Sau96I	GGNCC	7 cut(s)	29, 194, 728, 1067, 1516, 2393, 3297
SchI	GAGTC	2 cut(s)	608, 1957
SduI	GDGCHC	4 cut(s)	120, 1247, 1317, 2068
SexAI	ACCWGGT	1 cut(s)	3114
SfcI	CTRYAG	8 cut(s)	310, 471, 676, 750, 878, 1470, 1595, 2106
SfoI	GGCGCC	1 cut(s)	1110
SinI	GGWCC	5 cut(s)	728, 1067, 1516, 2393, 3297
SmiMI	CAYNNNNRTG	7 cut(s)	528, 1279, 1785, 1839, 2536, 2711, 3150
SmlI	CTYRAG	1 cut(s)	1996
SmoI	CTYRAG	1 cut(s)	1996
SphI	GCATGC	3 cut(s)	1459, 3149, 3316
SseBI	AGGCCT	1 cut(s)	2691
SsiI	CCGC	4 cut(s)	5, 219, 1630, 1734
SspDI	GGCGCC	1 cut(s)	1108
SspI	AATATT	2 cut(s)	2676, 2807
SspMI	CTAG	9 cut(s)	212, 414, 1154, 2154, 2160, 2267, 2502, 2745, 3140
SstI	GAGCTC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	2691
StyI	CCWWGG	5 cut(s)	144, 709, 1247, 2219, 3269
TaaI	ACNGT	9 cut(s)	21, 325, 502, 659, 1539, 1687, 1751, 2486, 2545
TaqI	TCGA	7 cut(s)	86, 242, 815, 1795, 1837, 2386, 2737
TaqII	GACCGA	1 cut(s)	2773
TatI	WGTACW	5 cut(s)	1024, 1680, 1973, 3303, 3330
Tru1I	TTAA	8 cut(s)	333, 369, 785, 807, 854, 1161, 2313, 3051
Tru9I	TTAA	8 cut(s)	333, 369, 785, 807, 854, 1161, 2313, 3051
TscAI	CASTG	8 cut(s)	138, 415, 523, 887, 1584, 1756, 2122, 3016
TseFI	GTSAC	2 cut(s)	1552, 1960
TseI	GCWGC	8 cut(s)	309, 484, 642, 877, 1989, 1992, 2813, 2834
Tsp45I	GTSAC	2 cut(s)	1552, 1960
TspGWI	ACGGA	1 cut(s)	1059
TspRI	CASTG	8 cut(s)	138, 415, 523, 887, 1584, 1756, 2122, 3016
Van91I	CCANNNNNTGG	4 cut(s)	133, 203, 737, 1646
VpaK11BI	GGWCC	5 cut(s)	728, 1067, 1516, 2393, 3297
XbaI	TCTAGA	3 cut(s)	1153, 2266, 2501
XceI	RCATGY	8 cut(s)	254, 1209, 1284, 1459, 2535, 2539, 3149, 3316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2785
XmnI	GAANNNNTTC	3 cut(s)	236, 459, 2262
XspI	CTAG	9 cut(s)	212, 414, 1154, 2154, 2160, 2267, 2502, 2745, 3140
Zsp2I	ATGCAT	2 cut(s)	2537, 3151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.