Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004888.1

Orthogroup ID

OG0002142

Physical Location & Seq

Genomic Coordinates Reverse (-)

313870 .. 319218

Gene Structure 5349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004888.1_g000064.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2992 bp

agtggagcgaaccttggaatatgtatttggtctccctaacagatcaatcggttcgttgtctgggccggttgatgggaatctagttcgcggtattttgaagaatgagttctcgaaattacatgcaaattcaagtgctttggatggagacagagacggcatttccatttctgggaatggctgcagaccctacaccattggtcttgatgaagtcagtatccggggtgatattggaatcgttaagccacctttgcttgtagagagcttagcaatgttcagcagtgctagggctaacgcttctgtttggaaaggaaaatggatgtatgaagttattctagaaactgcaggtattcagcagcttggatgggctactgtttcttgccctttcactgaccataagggtgtaggtgatgctgatgattcatatgcgtttgatgggaggaggattagaaaatggaacaaggatgctgagtcatatggtcagtcatgggttgttggtgatgctattggatgctgcatagatttggactgtaatgaaatatcattctacagaaatggtgtctctcttggtttggcattccatggtattcgtaagatgggagcaggatgtggatattatcctgcagtttctctctcacaaggtgaacgatgtgaattaaattttggtggccgtccctttaaatttccaattgaaggctaccagccccttcaagcacctcctcctttaaatttgtttgcaactcagttgctgcagtgcttgtcaaggttgttgggtttgcactctgtggagcaggcaaaacattcttctgttgagaaattgagactgaagaggtttgtttctcctgacgaaattttttatcctgcttctcaggggatatgtgaggaacttttatctgtacttggagctgatgtttggggcatagagtatgttgcctggggtccgtttttgtcattcatggtggaagtgtttggattgcaggcgccacatgattattcaggcttagatagagttctggatgtctttctagaatttaatagatcacacttgttgtttgaacatattataaatgccctggcatgtggttgcaaaacagccacattggttctcaaagagtgcccatggtcagggtcatatccataccttgcattggcatgtcatatcctgagacggcaggaacttatggtgctctggtggaaatcacctgattttgaataccattttgaaaggttcctatcacgaaaggatccaaataagaatgatctggaatccatgatgccttctgtttggtggcctggttcatgtgaggatgtgtcctacgaaagtagcatgctgttgacgactacagctttatctgaagctgttacaaagattgaggagaagcatagggacctctgtcgcttggtcatacagttcataccacctgtgacacctccccagttgcctggttcagtgtttaggacatttctacagaaccttctactaaagaacagaggagctgaccgcaatcttccacctcctggagtttcaagcaattctgttcttgtttctttgtacacagttatacttcattttttatctgaggggtttggaatgggggaaatatgcggttggttgaagcacagtgaaaaaggtcgtgatgttggttttcttcataggggtggtcatcgaagctttccagtaggtttatttcttagaaatgatcctcatcgaaatgacaataccaggcttggaggatcttttagtcatctctcaaaatcacaccctgtagatgatcaggaagcagaagatatccggtgggaggaaggttgtatggatgatgaagaaacgagagtgactcatctaagtacaagaaaaccatgctgctgctcaagttacgacgaggattttacaagaatctcaaagaatccaattagatacacagctaaaggttcccgtgcccattgcagtcccatgccagagagatcttcccatgttactacagaatgcagtgctggaagtttgagtgatgatatggctgataaacctagttctagctaccaatctgaatctgattttagttattgcccggtgcaacattcgagttttgtaccaagggagggtattatgtcgtcagctacactcagagaagaagaacttctagatgttctattgctgttgtatcatataggtcttgcgccaaattttaagcaggcatcatattacatgaatcaccagttgcagtcaattgccaatcttgaagaaactgataaaaaaattcgagaaggaccttgttttgagcaattgaagcatttgaaagaagctcgtaatgttcatagagaagaggttattgattctgtaagacaatgcgcttggtaccgtatctccctatcctctagatggaagcaaagaggaatgtatgcaacatgcatgtggactgttcagttgcttcttgtccttagcaaagtggatttgttgttcacttatgtccctgaatactatcttgaagctctggttgactgctttcatgtgttgcgcaagtgtgatcctccatttgtcccttcatcaatatttatcaagcaaggccttgcttcatttatcacctttgtggttatgcatttcaacgaccctcgaatatctagtgcagatcttagggatctgcttctccaatctatttcggtcttggtacaatacaaagaatatttggctgcgtttgagagcaatgaagcagcgaaacagaggatgccaaaagcattgctgtcagcatttgataatagatcctggatcccagtaacgaacattcttctgcgtttgtgcaagggatctgggtttggctcatcaaagcatggagaatcatcgtcatcatccatcatcttccagaggttgttagggcaagcttgcatcagtgatgaagggttattctcagcttttctcaatcgcctgtttaacactctcagttggacaatgactgaattctcagtttctgttagagaaatgcaagaaaagtaccaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0060154 GO:0065007 GO:0070647 GO:0071704 GO:0098586 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPRY Ufd2P_core zf-C3HC4_3

Protein Analysis

996

Amino Acids

112.12

Weight (kDa)

6.11

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22010 AT2G22010
fragaria_vesca	FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_1g22150 FvH4_7g04730 FvH4_7g04730
malus_domestica	MD01G1017400.v1.1 MD15G1333600.v1.1
prunus_persica	Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1 Prupe.6G174100_v2.0.a1
pyrus_communis	pycom01g04820 pycom01g04830 pycom15g29160 pycom15g29170
rosa_chinensis	RchiOBHm_Chr2g0116231
rosa_laevigata	RLG00000018249
rosa_multiflora	Rmu_sc0003499.1_g000012 Rmu_sc0004888.1_g000064
rosa_roxburghii	Rroxscaffold_2G00127410
rosa_rugosa	Rorug02G0205000
rosa_samantha	Rh2AG260600 Rh2BG271700 Rh2CG266800 Rh2DG268800
rosa_wichuraiana	Rw2G020430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1062
Acc16I	TGCGCA	1 cut(s)	2511
Acc36I	ACCTGC	1 cut(s)	333
Acc65I	GGTACC	1 cut(s)	2350
AccB1I	GGYRCC	2 cut(s)	977, 2350
AccB7I	CCANNNNNTGG	1 cut(s)	1515
AccII	CGCG	1 cut(s)	88
AciI	CCGC	3 cut(s)	88, 1499, 1603
AcoI	YGGCCR	1 cut(s)	665
AcsI	RAATTY	9 cut(s)	125, 656, 678, 725, 847, 1026, 2177, 2251, 2946
AcuI	CTGAAG	2 cut(s)	843, 1372
AcyI	GRCGYC	1 cut(s)	978
AdeI	CACNNNGTG	2 cut(s)	639, 782
AfaI	GTAC	7 cut(s)	895, 1551, 1844, 2086, 2352, 2662, 2982
AfiI	CCNNNNNNNGG	9 cut(s)	72, 169, 690, 1122, 1145, 1515, 1796, 2094, 2374
AjnI	CCWGG	8 cut(s)	930, 1069, 1289, 1439, 1514, 1719, 2754, 2983
AjuI	GAANNNNNNNTTGG	4 cut(s)	10, 42, 643, 675
AleI	CACNNNNGTG	1 cut(s)	2580
AloI	GAACNNNNNNTCC	2 cut(s)	2436, 2468
Alw21I	GWGCWC	1 cut(s)	1186
Alw26I	GTCTC	6 cut(s)	36, 139, 145, 563, 812, 1157
AlwNI	CAGNNNCTG	2 cut(s)	746, 2958
AoxI	GGCC	4 cut(s)	63, 665, 1287, 2558
ApeKI	GCWGC	8 cut(s)	178, 353, 511, 746, 1858, 1861, 2682, 2703
ApoI	RAATTY	9 cut(s)	125, 656, 678, 725, 847, 1026, 2177, 2251, 2946
Asp700I	GAANNNNTTC	3 cut(s)	105, 328, 2131
Asp718I	GGTACC	1 cut(s)	2350
AspLEI	GCGC	4 cut(s)	980, 2174, 2346, 2512
AspS9I	GGNCC	4 cut(s)	63, 936, 1385, 2262
AsuC2I	CCSGG	2 cut(s)	219, 2064
AsuHPI	GGTGA	7 cut(s)	234, 417, 507, 651, 1189, 2199, 2567
AvaII	GGWCC	3 cut(s)	936, 1385, 2262
BaeGI	GKGCMC	2 cut(s)	1116, 1937
BamHI	GGATCC	2 cut(s)	1241, 2758
BanI	GGYRCC	2 cut(s)	977, 2350
Bbv12I	GWGCWC	1 cut(s)	1186
BbvI	GCAGC	8 cut(s)	165, 365, 498, 733, 1845, 1848, 2669, 2715
BccI	CCATC	7 cut(s)	66, 135, 355, 426, 587, 2368, 2850
BceAI	ACGGC	3 cut(s)	170, 652, 1182
BciT130I	CCWGG	8 cut(s)	932, 1071, 1291, 1441, 1516, 1721, 2756, 2985
BciVI	GTATCC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	1769
BcnI	CCSGG	2 cut(s)	219, 2064
BcoDI	GTCTC	6 cut(s)	36, 139, 145, 563, 812, 1157
BfaI	CTAG	9 cut(s)	81, 283, 333, 1023, 2023, 2029, 2136, 2371, 2614
BfmI	CTRYAG	9 cut(s)	179, 340, 545, 619, 747, 1339, 1464, 1762, 1975
BfoI	RGCGCY	1 cut(s)	981
BfuAI	ACCTGC	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	225
BglII	AGATCT	2 cut(s)	1959, 2621
BisI	GCNGC	8 cut(s)	179, 354, 512, 747, 1859, 1862, 2683, 2704
BlpI	GCTNAGC	1 cut(s)	263
BlsI	GCNGC	8 cut(s)	180, 355, 513, 748, 1860, 1863, 2684, 2705
Bme18I	GGWCC	3 cut(s)	936, 1385, 2262
BmgT120I	GGNCC	4 cut(s)	63, 936, 1385, 2262
BmiI	GGNNCC	8 cut(s)	937, 979, 1227, 1243, 1386, 1928, 2352, 2760
BmrI	ACTGGG	2 cut(s)	1427, 2757
BmsI	GCATC	8 cut(s)	398, 452, 488, 498, 1261, 2199, 2707, 2884
BmuI	ACTGGG	2 cut(s)	1427, 2757
BoxI	GACNNNNGTC	1 cut(s)	1390
BplI	GAGNNNNNCTC	2 cut(s)	1817, 1849
BpmI	CTGGAG	1 cut(s)	1537
Bpu10I	CCTNAGC	1 cut(s)	2433
Bpu1102I	GCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	1850
BpuMI	CCSGG	2 cut(s)	219, 2064
BsaBI	GATNNNNATC	2 cut(s)	76, 1702
BsaHI	GRCGYC	1 cut(s)	978
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	7 cut(s)	13, 218, 578, 931, 1069, 1116, 2088
BsaWI	WCCGGW	1 cut(s)	1789
BsaXI	ACNNNNNCTCC	4 cut(s)	892, 922, 2343, 2373
Bsc4I	CCNNNNNNNGG	9 cut(s)	72, 169, 690, 1122, 1145, 1515, 1796, 2094, 2374
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	4 cut(s)	1433, 1674, 2210, 2763
Bse3DI	GCAATG	4 cut(s)	274, 1937, 2702, 2727
Bse8I	GATNNNNATC	2 cut(s)	76, 1702
BseBI	CCWGG	8 cut(s)	932, 1071, 1291, 1441, 1516, 1721, 2756, 2985
BseDI	CCNNGG	7 cut(s)	13, 218, 578, 931, 1069, 1116, 2088
BseJI	GATNNNNATC	2 cut(s)	76, 1702
BseLI	CCNNNNNNNGG	9 cut(s)	72, 169, 690, 1122, 1145, 1515, 1796, 2094, 2374
BseMI	GCAATG	4 cut(s)	274, 1937, 2702, 2727
BseMII	CTCAG	9 cut(s)	457, 753, 879, 1152, 1567, 2132, 2911, 2942, 2965
BseNI	ACTGG	4 cut(s)	1433, 1674, 2210, 2763
BseRI	GAGGAG	4 cut(s)	452, 706, 1386, 1504
BseSI	GKGCMC	2 cut(s)	1116, 1937
BseXI	GCAGC	8 cut(s)	165, 365, 498, 733, 1845, 1848, 2669, 2715
BsgI	GTGCAG	1 cut(s)	2638
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	4 cut(s)	65, 667, 1289, 2560
BshNI	GGYRCC	2 cut(s)	977, 2350
BsiHKAI	GWGCWC	1 cut(s)	1186
BsiSI	CCGG	4 cut(s)	66, 218, 1790, 2064
BslFI	GGGAC	5 cut(s)	655, 1398, 1930, 2448, 2517
BslI	CCNNNNNNNGG	9 cut(s)	72, 169, 690, 1122, 1145, 1515, 1796, 2094, 2374
BsmAI	GTCTC	6 cut(s)	36, 139, 145, 563, 812, 1157
BsmBI	CGTCTC	2 cut(s)	145, 1157
BsmFI	GGGAC	5 cut(s)	655, 1398, 1930, 2448, 2517
BsmI	GAATGC	2 cut(s)	573, 1986
BsnI	GGCC	4 cut(s)	65, 667, 1289, 2560
Bso31I	GGTCTC	1 cut(s)	36
Bsp1286I	GDGCHC	3 cut(s)	1116, 1186, 1937
Bsp1407I	TGTACA	1 cut(s)	1549
Bsp1720I	GCTNAGC	1 cut(s)	263
Bsp19I	CCATGG	2 cut(s)	578, 1116
BspACI	CCGC	3 cut(s)	88, 1499, 1603
BspANI	GGCC	4 cut(s)	65, 667, 1289, 2560
BspCNI	CTCAG	9 cut(s)	458, 752, 878, 1153, 1568, 2131, 2910, 2941, 2964
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	8 cut(s)	937, 979, 1227, 1243, 1386, 1928, 2352, 2760
BspMAI	CTGCAG	4 cut(s)	183, 344, 623, 751
BspMI	ACCTGC	1 cut(s)	333
BspT107I	GGYRCC	2 cut(s)	977, 2350
BspTNI	GGTCTC	1 cut(s)	36
BsrDI	GCAATG	4 cut(s)	274, 1937, 2702, 2727
BsrFI	RCCGGY	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	1549
BsrI	ACTGG	4 cut(s)	1433, 1674, 2210, 2763
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	7 cut(s)	13, 218, 578, 931, 1069, 1116, 2088
BssNI	GRCGYC	1 cut(s)	978
BssT1I	CCWWGG	4 cut(s)	13, 578, 1116, 2088
Bst2UI	CCWGG	8 cut(s)	932, 1071, 1291, 1441, 1516, 1721, 2756, 2985
Bst4CI	ACNGT	7 cut(s)	371, 528, 1408, 1556, 1620, 2355, 2414
Bst6I	CTCTTC	2 cut(s)	819, 2311
BstACI	GRCGYC	1 cut(s)	978
BstAUI	TGTACA	1 cut(s)	1549
BstC8I	GCNNGC	6 cut(s)	790, 976, 1326, 2188, 2869, 2873
BstDSI	CCRYGG	2 cut(s)	578, 1116
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	981
BstHHI	GCGC	4 cut(s)	980, 2174, 2346, 2512
BstMAI	GTCTC	6 cut(s)	36, 139, 145, 563, 812, 1157
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 2282
BstNI	CCWGG	8 cut(s)	932, 1071, 1291, 1441, 1516, 1721, 2756, 2985
BstNSI	RCATGY	6 cut(s)	123, 1078, 1153, 1328, 2404, 2408
BstPAI	GACNNNNGTC	1 cut(s)	1390
BstSFI	CTRYAG	9 cut(s)	179, 340, 545, 619, 747, 1339, 1464, 1762, 1975
BstSLI	GKGCMC	2 cut(s)	1116, 1937
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	8 cut(s)	165, 365, 498, 733, 1845, 1848, 2669, 2715
BstX2I	RGATCY	8 cut(s)	1241, 1731, 1959, 2621, 2630, 2751, 2758, 2796
BstXI	CCANNNNNNTGG	1 cut(s)	1440
BstYI	RGATCY	8 cut(s)	1241, 1731, 1959, 2621, 2630, 2751, 2758, 2796
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	4 cut(s)	65, 667, 1289, 2560
BtgI	CCRYGG	2 cut(s)	578, 1116
BtsI	GCAGTG	3 cut(s)	284, 756, 1991
BtsIMutI	CAGTG	7 cut(s)	284, 385, 756, 1453, 1625, 1991, 2885
BveI	ACCTGC	1 cut(s)	333
Cac8I	GCNNGC	6 cut(s)	790, 976, 1326, 2188, 2869, 2873
CaiI	CAGNNNCTG	2 cut(s)	746, 2958
CfoI	GCGC	4 cut(s)	980, 2174, 2346, 2512
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	4 cut(s)	63, 936, 1385, 2262
CsiI	ACCWGGT	1 cut(s)	2983
Csp6I	GTAC	7 cut(s)	894, 1550, 1843, 2085, 2351, 2661, 2981
CviQI	GTAC	7 cut(s)	894, 1550, 1843, 2085, 2351, 2661, 2981
DinI	GGCGCC	1 cut(s)	979
DraI	TTTAAA	2 cut(s)	677, 724
DraIII	CACNNNGTG	2 cut(s)	639, 782
EaeI	YGGCCR	1 cut(s)	665
Eam1104I	CTCTTC	2 cut(s)	819, 2311
EarI	CTCTTC	2 cut(s)	819, 2311
Eco130I	CCWWGG	4 cut(s)	13, 578, 1116, 2088
Eco147I	AGGCCT	1 cut(s)	2560
Eco31I	GGTCTC	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	1787
Eco47I	GGWCC	3 cut(s)	936, 1385, 2262
Eco57I	CTGAAG	2 cut(s)	843, 1372
EcoO109I	RGGNCCY	2 cut(s)	1385, 2262
EcoRI	GAATTC	1 cut(s)	2946
EcoRII	CCWGG	8 cut(s)	930, 1069, 1289, 1439, 1514, 1719, 2754, 2983
EcoRV	GATATC	1 cut(s)	1787
EcoT14I	CCWWGG	4 cut(s)	13, 578, 1116, 2088
EcoT22I	ATGCAT	2 cut(s)	2406, 2593
EgeI	GGCGCC	1 cut(s)	979
EheI	GGCGCC	1 cut(s)	979
ErhI	CCWWGG	4 cut(s)	13, 578, 1116, 2088
Esp3I	CGTCTC	2 cut(s)	145, 1157
FalI	AAGNNNNNCTT	2 cut(s)	2116, 2148
FaqI	GGGAC	5 cut(s)	655, 1398, 1930, 2448, 2517
FauNDI	CATATG	2 cut(s)	422, 473
FbaI	TGATCA	1 cut(s)	1769
Fnu4HI	GCNGC	8 cut(s)	179, 354, 512, 747, 1859, 1862, 2683, 2704
Fsp4HI	GCNGC	8 cut(s)	179, 354, 512, 747, 1859, 1862, 2683, 2704
FspBI	CTAG	9 cut(s)	81, 283, 333, 1023, 2023, 2029, 2136, 2371, 2614
FspI	TGCGCA	1 cut(s)	2511
GlaI	GCGC	4 cut(s)	979, 2173, 2345, 2511
GluI	GCNGC	8 cut(s)	179, 354, 512, 747, 1859, 1862, 2683, 2704
GsuI	CTGGAG	1 cut(s)	1537
HaeII	RGCGCY	1 cut(s)	981
HaeIII	GGCC	4 cut(s)	65, 667, 1289, 2560
HapII	CCGG	4 cut(s)	66, 218, 1790, 2064
HhaI	GCGC	4 cut(s)	980, 2174, 2346, 2512
Hin1I	GRCGYC	1 cut(s)	978
Hin6I	GCGC	4 cut(s)	978, 2172, 2344, 2510
HinP1I	GCGC	4 cut(s)	978, 2172, 2344, 2510
HincII	GTYRAC	2 cut(s)	1333, 2492
HindII	GTYRAC	2 cut(s)	1333, 2492
HindIII	AAGCTT	2 cut(s)	1667, 2869
HpaII	CCGG	4 cut(s)	66, 218, 1790, 2064
HphI	GGTGA	7 cut(s)	234, 417, 507, 651, 1189, 2199, 2567
Hpy166II	GTNNAC	6 cut(s)	642, 1333, 1552, 2410, 2455, 2492
Hpy188I	TCNGA	5 cut(s)	1352, 1577, 2042, 2048, 2121
Hpy8I	GTNNAC	6 cut(s)	642, 1333, 1552, 2410, 2455, 2492
Hpy99I	CGWCG	1 cut(s)	1878
HpyAV	CCTTC	8 cut(s)	684, 714, 1285, 1482, 1794, 2253, 2545, 2880
HpyCH4III	ACNGT	7 cut(s)	371, 528, 1408, 1556, 1620, 2355, 2414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 2282
Hsp92I	GRCGYC	1 cut(s)	978
HspAI	GCGC	4 cut(s)	978, 2172, 2344, 2510
KasI	GGCGCC	1 cut(s)	977
KpnI	GGTACC	1 cut(s)	2354
Ksp22I	TGATCA	1 cut(s)	1769
LmnI	GCTCC	5 cut(s)	5, 597, 785, 900, 1491
Lsp1109I	GCAGC	8 cut(s)	165, 365, 498, 733, 1845, 1848, 2669, 2715
LweI	GCATC	8 cut(s)	398, 452, 488, 498, 1261, 2199, 2707, 2884
MabI	ACCWGGT	1 cut(s)	2983
MaeI	CTAG	9 cut(s)	81, 283, 333, 1023, 2023, 2029, 2136, 2371, 2614
MaeIII	GTNAC	6 cut(s)	1358, 1421, 1829, 1869, 1970, 2765
MfeI	CAATTG	3 cut(s)	685, 2221, 2277
MflI	RGATCY	8 cut(s)	1241, 1731, 1959, 2621, 2630, 2751, 2758, 2796
MhlI	GDGCHC	3 cut(s)	1116, 1186, 1937
Mly113I	GGCGCC	1 cut(s)	978
MlyI	GAGTC	2 cut(s)	477, 1826
MmeI	TCCRAC	1 cut(s)	2913
Mph1103I	ATGCAT	2 cut(s)	2406, 2593
MroXI	GAANNNNTTC	3 cut(s)	105, 328, 2131
MseI	TTAA	7 cut(s)	238, 654, 676, 723, 1030, 2182, 2920
MslI	CAYNNNNRTG	6 cut(s)	397, 1148, 1654, 1708, 2405, 2580
MspI	CCGG	4 cut(s)	66, 218, 1790, 2064
MunI	CAATTG	3 cut(s)	685, 2221, 2277
Mva1269I	GAATGC	2 cut(s)	573, 1986
MvaI	CCWGG	8 cut(s)	932, 1071, 1291, 1441, 1516, 1721, 2756, 2985
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	2 cut(s)	248, 2282
NarI	GGCGCC	1 cut(s)	978
NciI	CCSGG	2 cut(s)	219, 2064
NcoI	CCATGG	2 cut(s)	578, 1116
NdeI	CATATG	2 cut(s)	422, 473
NlaIV	GGNNCC	8 cut(s)	937, 979, 1227, 1243, 1386, 1928, 2352, 2760
NmuCI	GTSAC	2 cut(s)	1421, 1829
NsbI	TGCGCA	1 cut(s)	2511
NsiI	ATGCAT	2 cut(s)	2406, 2593
NspI	RCATGY	6 cut(s)	123, 1078, 1153, 1328, 2404, 2408
OliI	CACNNNNGTG	1 cut(s)	2580
PaeI	GCATGC	1 cut(s)	1328
PceI	AGGCCT	1 cut(s)	2560
PctI	GAATGC	2 cut(s)	573, 1986
PdmI	GAANNNNTTC	3 cut(s)	105, 328, 2131
PflMI	CCANNNNNTGG	1 cut(s)	1515
PfoI	TCCNGGA	2 cut(s)	1514, 2754
PkrI	GCNGC	8 cut(s)	180, 355, 513, 748, 1860, 1863, 2684, 2705
PleI	GAGTC	2 cut(s)	476, 1826
PluTI	GGCGCC	1 cut(s)	981
PpsI	GAGTC	2 cut(s)	476, 1826
PpuMI	RGGWCCY	2 cut(s)	1385, 2262
PshAI	GACNNNNGTC	1 cut(s)	1390
PsiI	TTATAA	1 cut(s)	1062
Psp5II	RGGWCCY	2 cut(s)	1385, 2262
Psp6I	CCWGG	8 cut(s)	930, 1069, 1289, 1439, 1514, 1719, 2754, 2983
PspGI	CCWGG	8 cut(s)	930, 1069, 1289, 1439, 1514, 1719, 2754, 2983
PspN4I	GGNNCC	8 cut(s)	937, 979, 1227, 1243, 1386, 1928, 2352, 2760
PspPI	GGNCC	4 cut(s)	63, 936, 1385, 2262
PspPPI	RGGWCCY	2 cut(s)	1385, 2262
PstI	CTGCAG	4 cut(s)	183, 344, 623, 751
PstNI	CAGNNNCTG	2 cut(s)	746, 2958
PsuI	RGATCY	8 cut(s)	1241, 1731, 1959, 2621, 2630, 2751, 2758, 2796
RsaI	GTAC	7 cut(s)	895, 1551, 1844, 2086, 2352, 2662, 2982
RsaNI	GTAC	7 cut(s)	894, 1550, 1843, 2085, 2351, 2661, 2981
RseI	CAYNNNNRTG	6 cut(s)	397, 1148, 1654, 1708, 2405, 2580
SaqAI	TTAA	7 cut(s)	238, 654, 676, 723, 1030, 2182, 2920
SatI	GCNGC	8 cut(s)	179, 354, 512, 747, 1859, 1862, 2683, 2704
Sau96I	GGNCC	4 cut(s)	63, 936, 1385, 2262
SchI	GAGTC	2 cut(s)	477, 1826
SduI	GDGCHC	3 cut(s)	1116, 1186, 1937
SexAI	ACCWGGT	1 cut(s)	2983
SfaNI	GCATC	8 cut(s)	398, 452, 488, 498, 1261, 2199, 2707, 2884
SfcI	CTRYAG	9 cut(s)	179, 340, 545, 619, 747, 1339, 1464, 1762, 1975
SfoI	GGCGCC	1 cut(s)	979
SinI	GGWCC	3 cut(s)	936, 1385, 2262
SmiMI	CAYNNNNRTG	6 cut(s)	397, 1148, 1654, 1708, 2405, 2580
SmlI	CTYRAG	1 cut(s)	1865
SmoI	CTYRAG	1 cut(s)	1865
SphI	GCATGC	1 cut(s)	1328
SseBI	AGGCCT	1 cut(s)	2560
SsiI	CCGC	3 cut(s)	88, 1499, 1603
SspDI	GGCGCC	1 cut(s)	977
SspI	AATATT	2 cut(s)	2545, 2676
SspMI	CTAG	9 cut(s)	81, 283, 333, 1023, 2023, 2029, 2136, 2371, 2614
StuI	AGGCCT	1 cut(s)	2560
StyI	CCWWGG	4 cut(s)	13, 578, 1116, 2088
TaaI	ACNGT	7 cut(s)	371, 528, 1408, 1556, 1620, 2355, 2414
TaqI	TCGA	6 cut(s)	111, 1664, 1706, 2076, 2255, 2606
TaqII	GACCGA	1 cut(s)	2642
TatI	WGTACW	3 cut(s)	893, 1549, 1842
Tru1I	TTAA	7 cut(s)	238, 654, 676, 723, 1030, 2182, 2920
Tru9I	TTAA	7 cut(s)	238, 654, 676, 723, 1030, 2182, 2920
TscAI	CASTG	7 cut(s)	284, 392, 756, 1453, 1625, 1991, 2885
TseFI	GTSAC	2 cut(s)	1421, 1829
TseI	GCWGC	8 cut(s)	178, 353, 511, 746, 1858, 1861, 2682, 2703
Tsp45I	GTSAC	2 cut(s)	1421, 1829
TspGWI	ACGGA	1 cut(s)	928
TspRI	CASTG	7 cut(s)	284, 392, 756, 1453, 1625, 1991, 2885
Van91I	CCANNNNNTGG	1 cut(s)	1515
VpaK11BI	GGWCC	3 cut(s)	936, 1385, 2262
XapI	RAATTY	9 cut(s)	125, 656, 678, 725, 847, 1026, 2177, 2251, 2946
XbaI	TCTAGA	4 cut(s)	332, 1022, 2135, 2370
XceI	RCATGY	6 cut(s)	123, 1078, 1153, 1328, 2404, 2408
XmnI	GAANNNNTTC	3 cut(s)	105, 328, 2131
XspI	CTAG	9 cut(s)	81, 283, 333, 1023, 2023, 2029, 2136, 2371, 2614
Zsp2I	ATGCAT	2 cut(s)	2406, 2593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.