FvH4_7g05350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016381
Physical Location & Seq
Forward (+)
5635537 .. 5637961
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05350.t1

Sequence Viewer

Length: 987 bp
ATGGCGGAATCCAACTCTAACAAGAAGAAGAATGGCGGTCTCGGCTTTCAGATCCTCCAGCAGAAGAAGCGATCCCACCGGTGCCTCAACTTCATCATTGACAAGAGAGACAACCCTCTCTTCTGGTCCTCCTCAGATTCACCAACCGCGCTTCACCCCAAAACCCCGCTACTACTCAAACCCGACAAAGATTCGCCCCCGGCAACCTCGTCCACTGCTGCTGATTCTAGAAGAGGCCGGTCGGTGTCTCGGAACGCCGATGTTTTGGTCGGTCGGAGCCAGTCCAGAGTCGACACTGGCCGTCGCAACCGCTCCGTTTCCCGGTGTCCGGAGCCCAGGGGGCGTTCCGTCATTTCCAAGAGTGAAGATGAACAAGACTGCACATCTGCATTGAATAAAGCAGAGCAAGGCAAAAAGGGTGATTTGGTTAGAACTAGCTCGGATGAGTTGGATCAGTTGAAAGGCCTGAAGAAATGGTCCAGTCAGCATTCGCCTTTCCAGCCTTCACATGCCAACTTTTCCAGCTTGCAATCTTCGAATTGGGAAGATGGGGTTTCCACCGCAAGTTCCTTATCTGGAGCTGAAGAGAAAAGTTTTAAAGCGGCTTGTGAACAGATGAATATAGATCATGGACCTTCTGGTGATAATTTGTCGGTTCAAGCTATTCATTTGGAAGATGAAACCACGAGTAGTAATATATATGAAACAGTCCGATCTGAAGTGAGACGTGCTATATCTGAGATTCAAAATGACCTTGAAAGTGCTATGCGAAGGGGCAGTACTCTGACACTAGCAACTTCTGACATTTCTGATATCCCTCCCGACTTAGTAAACCCAAGTGCAGTTGAATTGGTTTTGGGCATCAGAAGAGAATATGCCAAAAAACTTGAGCAGGTAGAAATTTCCATTTCTGTGACCATGCTTCATATGATGTTGTTCAATGTTTTTTCATGCGGAGTAGTTGGATGTGGCTTAATTGACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

35.96

Weight (kDa)

7.64

Isoelectric Point (pI)

65.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016381)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04960 FvH4_7g05350
malus_domestica MD02G1265200.v1.1
prunus_persica Prupe.2G060300_v2.0.a1
pyrus_communis pycom02g22660
rosa_chinensis RchiOBHm_Chr1g0331161
rosa_laevigata RLG00000029749
rosa_multiflora Rmu_sc0006123.1_g000009
rosa_roxburghii Rroxscaffold_4G00319310
rosa_rugosa Rorug01G0091800
rosa_samantha Rh1AG114800 Rh1BG087500 Rh1CG110800 Rh1DG119500
rosa_wichuraiana Rw1G009300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 883
AccB1I GGYRCC 1 cut(s) 81
AccBSI CCGCTC 1 cut(s) 312
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 8 cut(s) 5, 36, 147, 167, 310, 561, 602, 954
AclWI GGATC 3 cut(s) 46, 66, 459
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 1 cut(s) 900
AcuI CTGAAG 3 cut(s) 488, 603, 738
AfaI GTAC 1 cut(s) 781
AfiI CCNNNNNNNGG 2 cut(s) 321, 328
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 7 cut(s) 394, 460, 659, 746, 758, 848, 940
AjiI CACGTC 1 cut(s) 728
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 4 cut(s) 438, 525, 581, 662
AluI AGCT 4 cut(s) 438, 525, 581, 662
Alw26I GTCTC 4 cut(s) 44, 102, 252, 718
AlwI GGATC 3 cut(s) 46, 66, 459
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 3 cut(s) 235, 298, 463
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 900
AsiGI ACCGGT 1 cut(s) 78
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 3 cut(s) 126, 477, 632
AsuC2I CCSGG 2 cut(s) 200, 322
AsuHPI GGTGA 4 cut(s) 132, 146, 431, 653
AsuII TTCGAA 1 cut(s) 536
AvaII GGWCC 3 cut(s) 126, 477, 632
BanI GGYRCC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 336
BarI GAAGNNNNNNTAC 2 cut(s) 763, 795
BauI CACGAG 1 cut(s) 685
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 542
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 1 cut(s) 337
BcnI CCSGG 2 cut(s) 200, 322
BcoDI GTCTC 4 cut(s) 44, 102, 252, 718
BfaI CTAG 3 cut(s) 228, 435, 791
BfuAI ACCTGC 1 cut(s) 883
BglI GCCNNNNNGGC 1 cut(s) 340
BisI GCNGC 2 cut(s) 219, 603
BlsI GCNGC 2 cut(s) 220, 604
BmcAI AGTACT 1 cut(s) 781
Bme1390I CCNGG 3 cut(s) 200, 322, 337
Bme18I GGWCC 3 cut(s) 126, 477, 632
BmgBI CACGTC 1 cut(s) 728
BmgT120I GGNCC 3 cut(s) 126, 477, 632
BmiI GGNNCC 3 cut(s) 83, 278, 333
BmrFI CCNGG 3 cut(s) 200, 322, 337
BmsI GCATC 1 cut(s) 870
BpmI CTGGAG 2 cut(s) 41, 597
Bpu14I TTCGAA 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 908
BpuMI CCSGG 2 cut(s) 200, 322
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 198, 335, 336
BsaWI WCCGGW 2 cut(s) 78, 328
Bsc4I CCNNNNNNNGG 2 cut(s) 321, 328
Bse118I RCCGGY 2 cut(s) 78, 237
Bse1I ACTGG 3 cut(s) 280, 301, 480
BseAI TCCGGA 1 cut(s) 328
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 3 cut(s) 198, 335, 336
BseGI GGATG 2 cut(s) 448, 971
BseLI CCNNNNNNNGG 2 cut(s) 321, 328
BseMII CTCAG 2 cut(s) 147, 729
BseNI ACTGG 3 cut(s) 280, 301, 480
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 205
BsgI GTGCAG 2 cut(s) 364, 861
Bsh1236I CGCG 1 cut(s) 149
Bsh1285I CGRYCG 2 cut(s) 242, 274
BshFI GGCC 3 cut(s) 237, 300, 465
BshNI GGYRCC 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 78
BsiEI CGRYCG 2 cut(s) 242, 274
BsiSI CCGG 5 cut(s) 79, 200, 238, 322, 329
BslI CCNNNNNNNGG 2 cut(s) 321, 328
BsmAI GTCTC 4 cut(s) 44, 102, 252, 718
BsmBI CGTCTC 1 cut(s) 718
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 3 cut(s) 237, 300, 465
Bso31I GGTCTC 1 cut(s) 44
Bsp119I TTCGAA 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 336
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 5 cut(s) 51, 71, 451, 625, 713
BspACI CCGC 8 cut(s) 5, 36, 147, 167, 310, 561, 602, 954
BspANI GGCC 3 cut(s) 237, 300, 465
BspCNI CTCAG 2 cut(s) 146, 730
BspEI TCCGGA 1 cut(s) 328
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 3 cut(s) 83, 278, 333
BspMI ACCTGC 1 cut(s) 883
BspPI GGATC 3 cut(s) 46, 66, 459
BspT104I TTCGAA 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 312
BsrFI RCCGGY 2 cut(s) 78, 237
BsrI ACTGG 3 cut(s) 280, 301, 480
BssAI RCCGGY 2 cut(s) 78, 237
BssECI CCNNGG 3 cut(s) 198, 335, 336
BssMI GATC 5 cut(s) 51, 71, 451, 625, 713
BssSI CACGAG 1 cut(s) 685
Bst2BI CACGAG 1 cut(s) 685
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 1 cut(s) 709
Bst6I CTCTTC 4 cut(s) 125, 226, 579, 862
BstBI TTCGAA 1 cut(s) 536
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 3 cut(s) 133, 738, 826
BstF5I GGATG 2 cut(s) 448, 971
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 5 cut(s) 54, 74, 454, 628, 716
BstMAI GTCTC 4 cut(s) 44, 102, 252, 718
BstMBI GATC 5 cut(s) 51, 71, 451, 625, 713
BstMCI CGRYCG 2 cut(s) 242, 274
BstMWI GCNNNNNNNGC 4 cut(s) 42, 67, 340, 499
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 3 cut(s) 198, 320, 335
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 3 cut(s) 237, 300, 465
BtrI CACGTC 1 cut(s) 728
BtsCI GGATG 2 cut(s) 448, 971
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 294
BveI ACCTGC 1 cut(s) 883
Cac8I GCNNGC 1 cut(s) 527
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 2 cut(s) 78, 237
Cfr13I GGNCC 3 cut(s) 126, 477, 632
Csp6I GTAC 1 cut(s) 780
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 4 cut(s) 509, 629, 919, 951
CviQI GTAC 1 cut(s) 780
DdeI CTNAG 3 cut(s) 133, 738, 826
DpnI GATC 5 cut(s) 53, 73, 453, 627, 715
DpnII GATC 5 cut(s) 51, 71, 451, 625, 713
DraI TTTAAA 1 cut(s) 598
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 4 cut(s) 125, 226, 579, 862
EarI CTCTTC 4 cut(s) 125, 226, 579, 862
EciI GGCGGA 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 44
Eco32I GATATC 1 cut(s) 814
Eco47I GGWCC 3 cut(s) 126, 477, 632
Eco57I CTGAAG 3 cut(s) 488, 603, 738
EcoRII CCWGG 1 cut(s) 335
EcoRV GATATC 1 cut(s) 814
EcoT38I GRGCYC 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 718
FaeI CATG 4 cut(s) 512, 632, 922, 954
FatI CATG 4 cut(s) 508, 628, 918, 950
FauI CCCGC 1 cut(s) 174
FauNDI CATATG 1 cut(s) 927
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 219, 603
FokI GGATG 2 cut(s) 455, 978
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 2 cut(s) 219, 603
FspBI CTAG 3 cut(s) 228, 435, 791
GlaI GCGC 1 cut(s) 150
GluI GCNGC 2 cut(s) 219, 603
GsuI CTGGAG 2 cut(s) 41, 597
HaeIII GGCC 3 cut(s) 237, 300, 465
HapII CCGG 5 cut(s) 79, 200, 238, 322, 329
HhaI GCGC 1 cut(s) 151
Hin1II CATG 4 cut(s) 512, 632, 922, 954
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 6 cut(s) 8, 137, 191, 224, 288, 742
HpaII CCGG 5 cut(s) 79, 200, 238, 322, 329
HphI GGTGA 4 cut(s) 132, 146, 431, 653
Hpy166II GTNNAC 4 cut(s) 213, 292, 611, 832
Hpy188III TCNNGA 5 cut(s) 228, 285, 329, 576, 821
Hpy8I GTNNAC 4 cut(s) 213, 292, 611, 832
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 3 cut(s) 513, 645, 765
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4IV ACGT 1 cut(s) 727
HpyCH4V TGCA 4 cut(s) 381, 389, 529, 842
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 67, 340, 499
HpyF3I CTNAG 3 cut(s) 133, 738, 826
HpySE526I ACGT 1 cut(s) 727
Hsp92II CATG 4 cut(s) 512, 632, 922, 954
HspAI GCGC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 5 cut(s) 51, 71, 451, 625, 713
LmnI GCTCC 4 cut(s) 276, 317, 331, 578
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 870
MaeI CTAG 3 cut(s) 228, 435, 791
MaeII ACGT 1 cut(s) 727
MaeIII GTNAC 1 cut(s) 913
MalI GATC 5 cut(s) 53, 73, 453, 627, 715
MbiI CCGCTC 1 cut(s) 312
MboI GATC 5 cut(s) 51, 71, 451, 625, 713
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 5 cut(s) 538, 646, 848, 900, 975
MlyI GAGTC 1 cut(s) 297
MmeI TCCRAC 4 cut(s) 36, 254, 429, 943
MnlI CCTC 8 cut(s) 65, 95, 126, 139, 142, 217, 227, 828
MroI TCCGGA 1 cut(s) 328
MseI TTAA 2 cut(s) 597, 974
MslI CAYNNNNRTG 1 cut(s) 911
MspI CCGG 5 cut(s) 79, 200, 238, 322, 329
MspR9I CCNGG 3 cut(s) 200, 322, 337
Mva1269I GAATGC 1 cut(s) 487
MvaI CCWGG 1 cut(s) 337
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 42, 67, 340, 499
NciI CCSGG 2 cut(s) 200, 322
NdeI CATATG 1 cut(s) 927
NdeII GATC 5 cut(s) 51, 71, 451, 625, 713
NlaIII CATG 4 cut(s) 512, 632, 922, 954
NlaIV GGNNCC 3 cut(s) 83, 278, 333
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 913
NspI RCATGY 1 cut(s) 512
NspV TTCGAA 1 cut(s) 536
PasI CCCWGGG 1 cut(s) 336
PceI AGGCCT 1 cut(s) 465
PctI GAATGC 1 cut(s) 487
PfeI GAWTC 5 cut(s) 8, 137, 191, 224, 742
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 2 cut(s) 220, 604
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 335
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 3 cut(s) 83, 278, 333
PspPI GGNCC 3 cut(s) 126, 477, 632
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 1 cut(s) 781
RsaNI GTAC 1 cut(s) 780
RseI CAYNNNNRTG 1 cut(s) 911
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 597, 974
SatI GCNGC 2 cut(s) 219, 603
Sau3AI GATC 5 cut(s) 51, 71, 451, 625, 713
Sau96I GGNCC 3 cut(s) 126, 477, 632
ScaI AGTACT 1 cut(s) 781
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 3 cut(s) 200, 322, 337
SduI GDGCHC 1 cut(s) 336
SetI ASST 9 cut(s) 209, 440, 527, 583, 637, 664, 730, 756, 897
SfaNI GCATC 1 cut(s) 870
SfuI TTCGAA 1 cut(s) 536
SgrAI CRCCGGYG 1 cut(s) 78
SinI GGWCC 3 cut(s) 126, 477, 632
SmiMI CAYNNNNRTG 1 cut(s) 911
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
Sse9I AATT 5 cut(s) 538, 646, 848, 900, 975
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 8 cut(s) 5, 36, 147, 167, 310, 561, 602, 954
SspMI CTAG 3 cut(s) 228, 435, 791
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 3 cut(s) 198, 320, 335
TaaI ACNGT 1 cut(s) 709
TaiI ACGT 1 cut(s) 730
TaqI TCGA 2 cut(s) 291, 536
TaqII GACCGA 1 cut(s) 260
TasI AATT 5 cut(s) 538, 646, 848, 900, 975
TatI WGTACW 1 cut(s) 779
TauI GCSGC 1 cut(s) 605
TfiI GAWTC 5 cut(s) 8, 137, 191, 224, 742
Tru1I TTAA 2 cut(s) 597, 974
Tru9I TTAA 2 cut(s) 597, 974
TscAI CASTG 2 cut(s) 220, 301
TseFI GTSAC 1 cut(s) 913
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 913
TspDTI ATGAA 8 cut(s) 82, 384, 632, 656, 693, 717, 914, 939
TspGWI ACGGA 2 cut(s) 304, 337
TspRI CASTG 2 cut(s) 220, 301
VpaK11BI GGWCC 3 cut(s) 126, 477, 632
XapI RAATTY 1 cut(s) 900
XbaI TCTAGA 1 cut(s) 227
XceI RCATGY 1 cut(s) 512
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 3 cut(s) 228, 435, 791
ZrmI AGTACT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.