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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g04960 FvH4_7g05350 |
| malus_domestica | MD02G1265200.v1.1 |
| prunus_persica | Prupe.2G060300_v2.0.a1 |
| pyrus_communis | pycom02g22660 |
| rosa_chinensis | RchiOBHm_Chr1g0331161 |
| rosa_laevigata | RLG00000029749 |
| rosa_multiflora | Rmu_sc0006123.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00319310 |
| rosa_rugosa | Rorug01G0091800 |
| rosa_samantha | Rh1AG114800 Rh1BG087500 Rh1CG110800 Rh1DG119500 |
| rosa_wichuraiana | Rw1G009300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 50 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1533 |
| AccBSI | CCGCTC | 1 cut(s) | 456 |
| AccI | GTMKAC | 2 cut(s) | 236, 435 |
| AccII | CGCG | 1 cut(s) | 352 |
| AccIII | TCCGGA | 1 cut(s) | 472 |
| AciI | CCGC | 8 cut(s) | 5, 45, 252, 272, 352, 454, 705, 1758 |
| AclWI | GGATC | 6 cut(s) | 138, 603, 1127, 1286, 1299, 1638 |
| AcoI | YGGCCR | 2 cut(s) | 442, 1464 |
| AcsI | RAATTY | 1 cut(s) | 1538 |
| AcuI | CTGAAG | 4 cut(s) | 882, 1136, 1353, 1437 |
| AfaI | GTAC | 4 cut(s) | 526, 855, 1125, 1598 |
| AfeI | AGCGCT | 1 cut(s) | 160 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 231, 465, 472, 1047, 1533 |
| AflII | CTTAAG | 1 cut(s) | 610 |
| AhlI | ACTAGT | 1 cut(s) | 107 |
| AjiI | CACGTC | 1 cut(s) | 872 |
| AjnI | CCWGG | 3 cut(s) | 479, 969, 1477 |
| Alw21I | GWGCWC | 2 cut(s) | 1089, 1104 |
| Alw26I | GTCTC | 3 cut(s) | 13, 210, 862 |
| AlwI | GGATC | 6 cut(s) | 138, 603, 1127, 1286, 1299, 1638 |
| Ama87I | CYCGRG | 2 cut(s) | 397, 465 |
| Aor13HI | TCCGGA | 1 cut(s) | 472 |
| Aor51HI | AGCGCT | 1 cut(s) | 160 |
| AoxI | GGCC | 7 cut(s) | 299, 337, 442, 1151, 1227, 1464, 1556 |
| ApeKI | GCWGC | 3 cut(s) | 320, 746, 1685 |
| ApoI | RAATTY | 1 cut(s) | 1538 |
| AseI | ATTAAT | 1 cut(s) | 1317 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 737, 1125 |
| AspLEI | GCGC | 1 cut(s) | 161 |
| AspS9I | GGNCC | 7 cut(s) | 171, 337, 470, 621, 722, 1151, 1475 |
| AsuC2I | CCSGG | 2 cut(s) | 466, 467 |
| AsuHPI | GGTGA | 3 cut(s) | 627, 797, 1676 |
| AsuII | TTCGAA | 1 cut(s) | 680 |
| AsuNHI | GCTAGC | 1 cut(s) | 1178 |
| AvaI | CYCGRG | 2 cut(s) | 397, 465 |
| AvaII | GGWCC | 5 cut(s) | 171, 470, 621, 722, 1475 |
| BalI | TGGCCA | 1 cut(s) | 1466 |
| BamHI | GGATCC | 1 cut(s) | 1291 |
| BanI | GGYRCC | 1 cut(s) | 50 |
| BanII | GRGCYC | 2 cut(s) | 480, 1104 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 907, 939 |
| BbsI | GAAGAC | 1 cut(s) | 696 |
| Bbv12I | GWGCWC | 2 cut(s) | 1089, 1104 |
| BbvI | GCAGC | 3 cut(s) | 307, 758, 1697 |
| BccI | CCATC | 1 cut(s) | 1655 |
| BceAI | ACGGC | 2 cut(s) | 429, 971 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 645, 679 |
| BciT130I | CCWGG | 3 cut(s) | 481, 971, 1479 |
| BciVI | GTATCC | 2 cut(s) | 97, 1258 |
| BcnI | CCSGG | 2 cut(s) | 466, 467 |
| BcoDI | GTCTC | 3 cut(s) | 13, 210, 862 |
| BcuI | ACTAGT | 1 cut(s) | 107 |
| BfaI | CTAG | 7 cut(s) | 108, 275, 330, 579, 935, 1053, 1179 |
| BfmI | CTRYAG | 3 cut(s) | 1077, 1390, 1683 |
| BfoI | RGCGCY | 1 cut(s) | 162 |
| BfrI | CTTAAG | 1 cut(s) | 610 |
| BfuI | GTATCC | 2 cut(s) | 97, 1258 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 484 |
| BglII | AGATCT | 1 cut(s) | 1069 |
| BisI | GCNGC | 3 cut(s) | 321, 747, 1686 |
| BlpI | GCTNAGC | 1 cut(s) | 1103 |
| BlsI | GCNGC | 3 cut(s) | 322, 748, 1687 |
| BmcAI | AGTACT | 1 cut(s) | 1125 |
| Bme1390I | CCNGG | 5 cut(s) | 466, 467, 481, 971, 1479 |
| Bme18I | GGWCC | 5 cut(s) | 171, 470, 621, 722, 1475 |
| BmeT110I | CYCGRG | 2 cut(s) | 397, 465 |
| BmgBI | CACGTC | 1 cut(s) | 872 |
| BmgT120I | GGNCC | 7 cut(s) | 171, 337, 470, 621, 722, 1151, 1475 |
| BmiI | GGNNCC | 9 cut(s) | 52, 338, 380, 422, 471, 477, 724, 1293, 1485 |
| BmrFI | CCNGG | 5 cut(s) | 466, 467, 481, 971, 1479 |
| BmsI | GCATC | 2 cut(s) | 102, 1428 |
| BmtI | GCTAGC | 1 cut(s) | 1182 |
| BoxI | GACNNNNGTC | 1 cut(s) | 399 |
| BpiI | GAAGAC | 1 cut(s) | 696 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1103 |
| Bpu14I | TTCGAA | 1 cut(s) | 680 |
| BpuEI | CTTGAG | 4 cut(s) | 151, 174, 1052, 1592 |
| BpuMI | CCSGG | 2 cut(s) | 466, 467 |
| Bsa29I | ATCGAT | 1 cut(s) | 96 |
| BsaI | GGTCTC | 1 cut(s) | 13 |
| BsaJI | CCNNGG | 7 cut(s) | 465, 466, 479, 480, 1041, 1090, 1478 |
| BsaWI | WCCGGW | 3 cut(s) | 314, 472, 782 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 231, 465, 472, 1047, 1533 |
| Bse118I | RCCGGY | 3 cut(s) | 47, 301, 339 |
| Bse1I | ACTGG | 3 cut(s) | 382, 445, 624 |
| BseAI | TCCGGA | 1 cut(s) | 472 |
| BseBI | CCWGG | 3 cut(s) | 481, 971, 1479 |
| BseCI | ATCGAT | 1 cut(s) | 96 |
| BseDI | CCNNGG | 7 cut(s) | 465, 466, 479, 480, 1041, 1090, 1478 |
| BseGI | GGATG | 1 cut(s) | 1419 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 231, 465, 472, 1047, 1533 |
| BseMII | CTCAG | 2 cut(s) | 873, 1117 |
| BseNI | ACTGG | 3 cut(s) | 382, 445, 624 |
| BseRI | GAGGAG | 1 cut(s) | 1097 |
| BseXI | GCAGC | 3 cut(s) | 307, 758, 1697 |
| Bsh1236I | CGCG | 1 cut(s) | 352 |
| Bsh1285I | CGRYCG | 1 cut(s) | 344 |
| BshFI | GGCC | 7 cut(s) | 301, 339, 444, 1153, 1229, 1466, 1558 |
| BshNI | GGYRCC | 1 cut(s) | 50 |
| BshVI | ATCGAT | 1 cut(s) | 96 |
| BsiEI | CGRYCG | 1 cut(s) | 344 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1089, 1104 |
| BsiHKCI | CYCGRG | 2 cut(s) | 397, 465 |
| BsiSI | CCGG | 8 cut(s) | 48, 302, 315, 340, 466, 473, 783, 929 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 231, 465, 472, 1047, 1533 |
| BsmAI | GTCTC | 3 cut(s) | 13, 210, 862 |
| BsmBI | CGTCTC | 1 cut(s) | 862 |
| BsmI | GAATGC | 1 cut(s) | 631 |
| BsnI | GGCC | 7 cut(s) | 301, 339, 444, 1153, 1229, 1466, 1558 |
| Bso31I | GGTCTC | 1 cut(s) | 13 |
| BsoBI | CYCGRG | 2 cut(s) | 397, 465 |
| Bsp119I | TTCGAA | 1 cut(s) | 680 |
| Bsp1286I | GDGCHC | 3 cut(s) | 480, 1089, 1104 |
| Bsp13I | TCCGGA | 1 cut(s) | 472 |
| Bsp143I | GATC | 7 cut(s) | 143, 595, 857, 1069, 1132, 1291, 1643 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1103 |
| BspACI | CCGC | 8 cut(s) | 5, 45, 252, 272, 352, 454, 705, 1758 |
| BspANI | GGCC | 7 cut(s) | 301, 339, 444, 1153, 1229, 1466, 1558 |
| BspCNI | CTCAG | 2 cut(s) | 874, 1116 |
| BspDI | ATCGAT | 1 cut(s) | 96 |
| BspEI | TCCGGA | 1 cut(s) | 472 |
| BspFNI | CGCG | 1 cut(s) | 352 |
| BspHI | TCATGA | 1 cut(s) | 1374 |
| BspLI | GGNNCC | 9 cut(s) | 52, 338, 380, 422, 471, 477, 724, 1293, 1485 |
| BspMAI | CTGCAG | 1 cut(s) | 1687 |
| BspOI | GCTAGC | 1 cut(s) | 1182 |
| BspPI | GGATC | 6 cut(s) | 138, 603, 1127, 1286, 1299, 1638 |
| BspT104I | TTCGAA | 1 cut(s) | 680 |
| BspT107I | GGYRCC | 1 cut(s) | 50 |
| BspTI | CTTAAG | 1 cut(s) | 610 |
| BspTNI | GGTCTC | 1 cut(s) | 13 |
| BsrBI | CCGCTC | 1 cut(s) | 456 |
| BsrFI | RCCGGY | 3 cut(s) | 47, 301, 339 |
| BsrI | ACTGG | 3 cut(s) | 382, 445, 624 |
| BssAI | RCCGGY | 3 cut(s) | 47, 301, 339 |
| BssECI | CCNNGG | 7 cut(s) | 465, 466, 479, 480, 1041, 1090, 1478 |
| BssMI | GATC | 7 cut(s) | 143, 595, 857, 1069, 1132, 1291, 1643 |
| BssT1I | CCWWGG | 1 cut(s) | 1041 |
| Bst2UI | CCWGG | 3 cut(s) | 481, 971, 1479 |
| Bst4CI | ACNGT | 4 cut(s) | 853, 1091, 1391, 1514 |
| Bst6I | CTCTTC | 3 cut(s) | 233, 723, 1006 |
| BstAFI | CTTAAG | 1 cut(s) | 610 |
| BstBI | TTCGAA | 1 cut(s) | 680 |
| BstC8I | GCNNGC | 6 cut(s) | 303, 671, 1180, 1468, 1560, 1676 |
| BstDEI | CTNAG | 3 cut(s) | 882, 1103, 1306 |
| BstDSI | CCRYGG | 1 cut(s) | 1090 |
| BstF5I | GGATG | 1 cut(s) | 1419 |
| BstFNI | CGCG | 1 cut(s) | 352 |
| BstH2I | RGCGCY | 1 cut(s) | 162 |
| BstHHI | GCGC | 1 cut(s) | 161 |
| BstKTI | GATC | 7 cut(s) | 146, 598, 860, 1072, 1135, 1294, 1646 |
| BstMAI | GTCTC | 3 cut(s) | 13, 210, 862 |
| BstMBI | GATC | 7 cut(s) | 143, 595, 857, 1069, 1132, 1291, 1643 |
| BstMCI | CGRYCG | 1 cut(s) | 344 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 484, 1523 |
| BstNI | CCWGG | 3 cut(s) | 481, 971, 1479 |
| BstNSI | RCATGY | 1 cut(s) | 656 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 399 |
| BstSCI | CCNGG | 5 cut(s) | 464, 465, 479, 969, 1477 |
| BstSFI | CTRYAG | 3 cut(s) | 1077, 1390, 1683 |
| BstUI | CGCG | 1 cut(s) | 352 |
| BstV1I | GCAGC | 3 cut(s) | 307, 758, 1697 |
| BstV2I | GAAGAC | 1 cut(s) | 696 |
| BstX2I | RGATCY | 5 cut(s) | 143, 1069, 1132, 1291, 1643 |
| BstYI | RGATCY | 5 cut(s) | 143, 1069, 1132, 1291, 1643 |
| Bsu15I | ATCGAT | 1 cut(s) | 96 |
| BsuI | GTATCC | 2 cut(s) | 97, 1258 |
| BsuRI | GGCC | 7 cut(s) | 301, 339, 444, 1153, 1229, 1466, 1558 |
| BsuTUI | ATCGAT | 1 cut(s) | 96 |
| BtgI | CCRYGG | 1 cut(s) | 1090 |
| BtgZI | GCGATG | 1 cut(s) | 1266 |
| BtrI | CACGTC | 1 cut(s) | 872 |
| BtsCI | GGATG | 1 cut(s) | 1419 |
| BtsI | GCAGTG | 1 cut(s) | 1477 |
| BtsIMutI | CAGTG | 3 cut(s) | 438, 1477, 1519 |
| Cac8I | GCNNGC | 6 cut(s) | 303, 671, 1180, 1468, 1560, 1676 |
| CciI | TCATGA | 1 cut(s) | 1374 |
| CfoI | GCGC | 1 cut(s) | 161 |
| Cfr10I | RCCGGY | 3 cut(s) | 47, 301, 339 |
| Cfr13I | GGNCC | 7 cut(s) | 171, 337, 470, 621, 722, 1151, 1475 |
| Cfr9I | CCCGGG | 1 cut(s) | 465 |
| ClaI | ATCGAT | 1 cut(s) | 96 |
| CsiI | ACCWGGT | 1 cut(s) | 969 |
| Csp6I | GTAC | 4 cut(s) | 525, 854, 1124, 1597 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 544, 579 |
| CviAII | CATG | 4 cut(s) | 618, 653, 1375, 1624 |
| CviQI | GTAC | 4 cut(s) | 525, 854, 1124, 1597 |
| DdeI | CTNAG | 3 cut(s) | 882, 1103, 1306 |
| DpnI | GATC | 7 cut(s) | 145, 597, 859, 1071, 1134, 1293, 1645 |
| DpnII | GATC | 7 cut(s) | 143, 595, 857, 1069, 1132, 1291, 1643 |
| EaeI | YGGCCR | 2 cut(s) | 442, 1464 |
| Eam1104I | CTCTTC | 3 cut(s) | 233, 723, 1006 |
| EarI | CTCTTC | 3 cut(s) | 233, 723, 1006 |
| Ecl136II | GAGCTC | 1 cut(s) | 1102 |
| Eco130I | CCWWGG | 1 cut(s) | 1041 |
| Eco24I | GRGCYC | 2 cut(s) | 480, 1104 |
| Eco31I | GGTCTC | 1 cut(s) | 13 |
| Eco32I | GATATC | 1 cut(s) | 958 |
| Eco47I | GGWCC | 5 cut(s) | 171, 470, 621, 722, 1475 |
| Eco47III | AGCGCT | 1 cut(s) | 160 |
| Eco53kI | GAGCTC | 1 cut(s) | 1102 |
| Eco57I | CTGAAG | 4 cut(s) | 882, 1136, 1353, 1437 |
| Eco88I | CYCGRG | 2 cut(s) | 397, 465 |
| EcoICRI | GAGCTC | 1 cut(s) | 1102 |
| EcoRII | CCWGG | 3 cut(s) | 479, 969, 1477 |
| EcoRV | GATATC | 1 cut(s) | 958 |
| EcoT14I | CCWWGG | 1 cut(s) | 1041 |
| EcoT38I | GRGCYC | 2 cut(s) | 480, 1104 |
| ErhI | CCWWGG | 1 cut(s) | 1041 |
| Esp3I | CGTCTC | 1 cut(s) | 862 |
| FaeI | CATG | 4 cut(s) | 621, 656, 1378, 1627 |
| FatI | CATG | 4 cut(s) | 617, 652, 1374, 1623 |
| FauI | CCCGC | 2 cut(s) | 52, 279 |
| FblI | GTMKAC | 2 cut(s) | 236, 435 |
| Fnu4HI | GCNGC | 3 cut(s) | 321, 747, 1686 |
| FokI | GGATG | 1 cut(s) | 1406 |
| FriOI | GRGCYC | 2 cut(s) | 480, 1104 |
| Fsp4HI | GCNGC | 3 cut(s) | 321, 747, 1686 |
| FspBI | CTAG | 7 cut(s) | 108, 275, 330, 579, 935, 1053, 1179 |
| GlaI | GCGC | 1 cut(s) | 160 |
| GluI | GCNGC | 3 cut(s) | 321, 747, 1686 |
| HaeII | RGCGCY | 1 cut(s) | 162 |
| HaeIII | GGCC | 7 cut(s) | 301, 339, 444, 1153, 1229, 1466, 1558 |
| HapII | CCGG | 8 cut(s) | 48, 302, 315, 340, 466, 473, 783, 929 |
| HhaI | GCGC | 1 cut(s) | 161 |
| Hin1II | CATG | 4 cut(s) | 621, 656, 1378, 1627 |
| Hin6I | GCGC | 1 cut(s) | 159 |
| HinP1I | GCGC | 1 cut(s) | 159 |
| HincII | GTYRAC | 4 cut(s) | 259, 394, 436, 1257 |
| HindII | GTYRAC | 4 cut(s) | 259, 394, 436, 1257 |
| HinfI | GANTC | 9 cut(s) | 185, 242, 293, 395, 432, 886, 1110, 1495, 1733 |
| HpaII | CCGG | 8 cut(s) | 48, 302, 315, 340, 466, 473, 783, 929 |
| HphI | GGTGA | 3 cut(s) | 627, 797, 1676 |
| Hpy166II | GTNNAC | 7 cut(s) | 237, 259, 394, 436, 755, 1094, 1257 |
| Hpy8I | GTNNAC | 7 cut(s) | 237, 259, 394, 436, 755, 1094, 1257 |
| Hpy99I | CGWCG | 2 cut(s) | 415, 450 |
| HpyAV | CCTTC | 6 cut(s) | 327, 545, 657, 909, 1111, 1461 |
| HpyCH4III | ACNGT | 4 cut(s) | 853, 1091, 1391, 1514 |
| HpyCH4IV | ACGT | 2 cut(s) | 871, 1207 |
| HpyCH4V | TGCA | 5 cut(s) | 656, 673, 1633, 1678, 1685 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 484, 1523 |
| HpyF3I | CTNAG | 3 cut(s) | 882, 1103, 1306 |
| HpySE526I | ACGT | 2 cut(s) | 871, 1207 |
| Hsp92II | CATG | 4 cut(s) | 621, 656, 1378, 1627 |
| HspAI | GCGC | 1 cut(s) | 159 |
| Kpn2I | TCCGGA | 1 cut(s) | 472 |
| KroI | GCCGGC | 1 cut(s) | 301 |
| KroNI | GCCGGC | 1 cut(s) | 303 |
| Kzo9I | GATC | 7 cut(s) | 143, 595, 857, 1069, 1132, 1291, 1643 |
| LmnI | GCTCC | 7 cut(s) | 90, 378, 420, 461, 475, 1084, 1483 |
| Lsp1109I | GCAGC | 3 cut(s) | 307, 758, 1697 |
| LweI | GCATC | 2 cut(s) | 102, 1428 |
| MabI | ACCWGGT | 1 cut(s) | 969 |
| MaeI | CTAG | 7 cut(s) | 108, 275, 330, 579, 935, 1053, 1179 |
| MaeII | ACGT | 2 cut(s) | 871, 1207 |
| MalI | GATC | 7 cut(s) | 145, 597, 859, 1071, 1134, 1293, 1645 |
| MbiI | CCGCTC | 1 cut(s) | 456 |
| MboI | GATC | 7 cut(s) | 143, 595, 857, 1069, 1132, 1291, 1643 |
| MflI | RGATCY | 5 cut(s) | 143, 1069, 1132, 1291, 1643 |
| MhlI | GDGCHC | 3 cut(s) | 480, 1089, 1104 |
| MlsI | TGGCCA | 1 cut(s) | 1466 |
| MluCI | AATT | 7 cut(s) | 682, 769, 807, 891, 992, 1430, 1538 |
| MluNI | TGGCCA | 1 cut(s) | 1466 |
| MlyI | GAGTC | 4 cut(s) | 179, 389, 441, 1742 |
| MmeI | TCCRAC | 4 cut(s) | 356, 398, 573, 1296 |
| Mox20I | TGGCCA | 1 cut(s) | 1466 |
| MroI | TCCGGA | 1 cut(s) | 472 |
| MroNI | GCCGGC | 1 cut(s) | 301 |
| MroXI | GAANNNNTTC | 2 cut(s) | 737, 1125 |
| MscI | TGGCCA | 1 cut(s) | 1466 |
| MseI | TTAA | 4 cut(s) | 279, 611, 1317, 1398 |
| MslI | CAYNNNNRTG | 2 cut(s) | 98, 783 |
| Msp20I | TGGCCA | 1 cut(s) | 1466 |
| MspA1I | CMGCKG | 2 cut(s) | 254, 1562 |
| MspCI | CTTAAG | 1 cut(s) | 610 |
| MspI | CCGG | 8 cut(s) | 48, 302, 315, 340, 466, 473, 783, 929 |
| MspR9I | CCNGG | 5 cut(s) | 466, 467, 481, 971, 1479 |
| Mva1269I | GAATGC | 1 cut(s) | 631 |
| MvaI | CCWGG | 3 cut(s) | 481, 971, 1479 |
| MvnI | CGCG | 1 cut(s) | 352 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 484, 1523 |
| NaeI | GCCGGC | 1 cut(s) | 303 |
| NciI | CCSGG | 2 cut(s) | 466, 467 |
| NdeII | GATC | 7 cut(s) | 143, 595, 857, 1069, 1132, 1291, 1643 |
| NgoMIV | GCCGGC | 1 cut(s) | 301 |
| NheI | GCTAGC | 1 cut(s) | 1178 |
| NlaIII | CATG | 4 cut(s) | 621, 656, 1378, 1627 |
| NlaIV | GGNNCC | 9 cut(s) | 52, 338, 380, 422, 471, 477, 724, 1293, 1485 |
| NspI | RCATGY | 1 cut(s) | 656 |
| NspV | TTCGAA | 1 cut(s) | 680 |
| PagI | TCATGA | 1 cut(s) | 1374 |
| PasI | CCCWGGG | 1 cut(s) | 480 |
| PctI | GAATGC | 1 cut(s) | 631 |
| PdiI | GCCGGC | 1 cut(s) | 303 |
| PdmI | GAANNNNTTC | 2 cut(s) | 737, 1125 |
| PfeI | GAWTC | 5 cut(s) | 242, 293, 886, 1110, 1495 |
| PflFI | GACNNNGTC | 2 cut(s) | 409, 619 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1533 |
| PkrI | GCNGC | 3 cut(s) | 322, 748, 1687 |
| PleI | GAGTC | 4 cut(s) | 179, 389, 440, 1741 |
| PpsI | GAGTC | 4 cut(s) | 179, 389, 440, 1741 |
| PshAI | GACNNNNGTC | 1 cut(s) | 399 |
| PshBI | ATTAAT | 1 cut(s) | 1317 |
| Psp124BI | GAGCTC | 1 cut(s) | 1104 |
| Psp6I | CCWGG | 3 cut(s) | 479, 969, 1477 |
| PspGI | CCWGG | 3 cut(s) | 479, 969, 1477 |
| PspN4I | GGNNCC | 9 cut(s) | 52, 338, 380, 422, 471, 477, 724, 1293, 1485 |
| PspPI | GGNCC | 7 cut(s) | 171, 337, 470, 621, 722, 1151, 1475 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1756, 1788 |
| PstI | CTGCAG | 1 cut(s) | 1687 |
| PsuI | RGATCY | 5 cut(s) | 143, 1069, 1132, 1291, 1643 |
| PsyI | GACNNNGTC | 2 cut(s) | 409, 619 |
| PvuII | CAGCTG | 1 cut(s) | 1562 |
| RsaI | GTAC | 4 cut(s) | 526, 855, 1125, 1598 |
| RsaNI | GTAC | 4 cut(s) | 525, 854, 1124, 1597 |
| RseI | CAYNNNNRTG | 2 cut(s) | 98, 783 |
| SacI | GAGCTC | 1 cut(s) | 1104 |
| SalI | GTCGAC | 1 cut(s) | 434 |
| SaqAI | TTAA | 4 cut(s) | 279, 611, 1317, 1398 |
| SatI | GCNGC | 3 cut(s) | 321, 747, 1686 |
| Sau3AI | GATC | 7 cut(s) | 143, 595, 857, 1069, 1132, 1291, 1643 |
| Sau96I | GGNCC | 7 cut(s) | 171, 337, 470, 621, 722, 1151, 1475 |
| ScaI | AGTACT | 1 cut(s) | 1125 |
| SchI | GAGTC | 4 cut(s) | 179, 389, 441, 1742 |
| ScrFI | CCNGG | 5 cut(s) | 466, 467, 481, 971, 1479 |
| SduI | GDGCHC | 3 cut(s) | 480, 1089, 1104 |
| SexAI | ACCWGGT | 1 cut(s) | 969 |
| SfaNI | GCATC | 2 cut(s) | 102, 1428 |
| SfcI | CTRYAG | 3 cut(s) | 1077, 1390, 1683 |
| SfuI | TTCGAA | 1 cut(s) | 680 |
| SgrAI | CRCCGGYG | 1 cut(s) | 47 |
| SinI | GGWCC | 5 cut(s) | 171, 470, 621, 722, 1475 |
| SmaI | CCCGGG | 1 cut(s) | 467 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 98, 783 |
| SmlI | CTYRAG | 5 cut(s) | 166, 189, 610, 1031, 1571 |
| SmoI | CTYRAG | 5 cut(s) | 166, 189, 610, 1031, 1571 |
| SpeI | ACTAGT | 1 cut(s) | 107 |
| Sse9I | AATT | 7 cut(s) | 682, 769, 807, 891, 992, 1430, 1538 |
| SsiI | CCGC | 8 cut(s) | 5, 45, 252, 272, 352, 454, 705, 1758 |
| SspI | AATATT | 1 cut(s) | 199 |
| SspMI | CTAG | 7 cut(s) | 108, 275, 330, 579, 935, 1053, 1179 |
| SstI | GAGCTC | 1 cut(s) | 1104 |
| StyD4I | CCNGG | 5 cut(s) | 464, 465, 479, 969, 1477 |
| StyI | CCWWGG | 1 cut(s) | 1041 |
| TaaI | ACNGT | 4 cut(s) | 853, 1091, 1391, 1514 |
| TaiI | ACGT | 2 cut(s) | 874, 1210 |
| TaqI | TCGA | 7 cut(s) | 96, 183, 296, 435, 665, 680, 1736 |
| TasI | AATT | 7 cut(s) | 682, 769, 807, 891, 992, 1430, 1538 |
| TatI | WGTACW | 3 cut(s) | 524, 1123, 1596 |
| TfiI | GAWTC | 5 cut(s) | 242, 293, 886, 1110, 1495 |
| Tru1I | TTAA | 4 cut(s) | 279, 611, 1317, 1398 |
| Tru9I | TTAA | 4 cut(s) | 279, 611, 1317, 1398 |
| TscAI | CASTG | 3 cut(s) | 445, 1477, 1519 |
| TseI | GCWGC | 3 cut(s) | 320, 746, 1685 |
| TspDTI | ATGAA | 9 cut(s) | 51, 522, 528, 776, 800, 861, 1391, 1416, 1764 |
| TspGWI | ACGGA | 5 cut(s) | 103, 254, 448, 481, 708 |
| TspMI | CCCGGG | 1 cut(s) | 465 |
| TspRI | CASTG | 3 cut(s) | 445, 1477, 1519 |
| Tth111I | GACNNNGTC | 2 cut(s) | 409, 619 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1533 |
| Vha464I | CTTAAG | 1 cut(s) | 610 |
| VpaK11BI | GGWCC | 5 cut(s) | 171, 470, 621, 722, 1475 |
| VspI | ATTAAT | 1 cut(s) | 1317 |
| XapI | RAATTY | 1 cut(s) | 1538 |
| XceI | RCATGY | 1 cut(s) | 656 |
| XmaI | CCCGGG | 1 cut(s) | 465 |
| XmiI | GTMKAC | 2 cut(s) | 236, 435 |
| XmnI | GAANNNNTTC | 2 cut(s) | 737, 1125 |
| XspI | CTAG | 7 cut(s) | 108, 275, 330, 579, 935, 1053, 1179 |
| ZrmI | AGTACT | 1 cut(s) | 1125 |