Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006244

Physical Location & Seq

Genomic Coordinates Reverse (-)

5747102 .. 5750878

Gene Structure 3777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAGAAAGTTTCAGCAAATTTATATAATCCACCTGAAAAAGTCACTTTTTGAAGAGCAAGCAGACAACATTGATATTAACATTCCAGAGCAAACAGGCAACATTGATAGGCACATTCACCGACTAGGTGCATATTTCCAGCATCCCCTTAGGGCGGGCGGCAAGTTCCGGAAGACACCCTTTCGGAGAAAAACCCATACGACGCCGTACGATCGGCCAACGTCCACCACTGCCAACGGCGGCTGGATCTCCAAGCTCGTCGATCCCGCTCAGAAGCTTCTCACCTACAGCGCCCACCGCCTCTTCTCCACCGTCTTCCACAAACGCCTCCCTCCGCCTTCCTCAGAGGCGAATCATGAAGCAAGGGTTATGGACAAGGGAGAAGTTGACATTGATCCTCCTGGAGTGCAAAATGGTGCCATTGAGCAAAGTACTGGTCCCAGAGCTACTTCTGCTGGAGACGGGGGGTTTACCTTACTTGAGCAAATTTTGGAGCAGAAAACCTTTACCAGATCTGAAATTGATCGATTGAAAGAGCTCTTGCATTCAAGGACTGATGATGTACCTACTGAGAATCTAGAGAAAAGATCTGAAGTAATACCTTCAATGGAAATGGTATCTCATGACAGGAAGGAGGAATACGCTAAAACCCCATTGCAAGATAAAAGTGCCAATAGCCGCCTCGTTTCAACCCCTGTTGTCAGTACAACTGTCCCTGATGATGATGCAGCTTCACCTGTTGAGCTGGCAAAAGCTTACATGGACAATAGGTCTTCAAAAGTATCCCCATCATTGCTGGGTCTACGTAGTCGAGCTGTCTATGAAGATTCACATAACAGTGTGGCATTTCCTTCCAAATTATCACTAATGTCAGTCGTTCCTCGATTTTCAAGCACTGGGGCGGCACCAGAGAATGGTTTTGCAACCCCTAGATCTCGAGGCAGATCTGCAATACACAGTATGGCTCGTACGCCATACTCTCGAGTTCAAACCCATAGTACATTTAGGGGTGTCGGGTCTACAGTTGATACTTACGGTGCACCATCCTCATCAACTCGGTCTAAATGGGAGCAAAGCCAACCCTCTGGATCCAAACAAGGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05169 map03013 map05169

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

40.8

Weight (kDa)

9.55

Isoelectric Point (pI)

60.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10650 AT3G10650
fragaria_vesca	FvH4_7g05430 FvH4_7g05440 FvH4_7g05440 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480
malus_domestica	MD02G1257800.v1.1 MD07G1063100.v1.1
prunus_persica	Prupe.2G074800_v2.0.a1
pyrus_communis	pycom02g21880 pycom07g04820
rosa_chinensis	RchiOBHm_Chr1g0332241
rosa_laevigata	RLG00000029683
rosa_multiflora	Rmu_co8444859.1_g000001 Rmu_sc0016174.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318320
rosa_rugosa	Rorug01G0099200
rosa_samantha	Rh1AG123000 Rh1BG094100 Rh1CG117600 Rh1DG128400
rosa_wichuraiana	Rw1G010030 Rw1G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	416, 904
AccB7I	CCANNNNNTGG	1 cut(s)	914
AccBSI	CCGCTC	1 cut(s)	269
AccI	GTMKAC	2 cut(s)	802, 1019
AccIII	TCCGGA	1 cut(s)	168
AciI	CCGC	8 cut(s)	155, 159, 240, 267, 298, 335, 679, 902
AclWI	GGATC	5 cut(s)	254, 257, 389, 1083, 1096
AcoI	YGGCCR	1 cut(s)	215
AcsI	RAATTY	2 cut(s)	18, 486
AcuI	CTGAAG	1 cut(s)	612
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	6 cut(s)	209, 433, 564, 706, 970, 1000
AfiI	CCNNNNNNNGG	3 cut(s)	154, 914, 1098
AgsI	TTSAA	8 cut(s)	53, 532, 549, 606, 690, 777, 891, 989
AhdI	GACNNNNNGTC	1 cut(s)	769
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	8 cut(s)	256, 277, 446, 538, 731, 745, 755, 815
AluI	AGCT	8 cut(s)	256, 277, 446, 538, 731, 745, 755, 815
Alw21I	GWGCWC	2 cut(s)	540, 1042
Alw26I	GTCTC	1 cut(s)	453
Alw44I	GTGCAC	1 cut(s)	1038
AlwI	GGATC	5 cut(s)	254, 257, 389, 1083, 1096
Ama87I	CYCGRG	2 cut(s)	936, 981
Aor13HI	TCCGGA	1 cut(s)	168
AoxI	GGCC	1 cut(s)	215
ApaLI	GTGCAC	1 cut(s)	1038
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	2 cut(s)	18, 486
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	3 cut(s)	110, 274, 726
AvaI	CYCGRG	2 cut(s)	936, 981
AvaII	GGWCC	1 cut(s)	437
AxyI	CCTNAGG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	1042
BamHI	GGATCC	1 cut(s)	1088
BanI	GGYRCC	2 cut(s)	416, 904
BanII	GRGCYC	1 cut(s)	540
BarI	GAAGNNNNNNTAC	2 cut(s)	623, 655
BbsI	GAAGAC	3 cut(s)	179, 307, 765
Bbv12I	GWGCWC	2 cut(s)	540, 1042
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	2 cut(s)	796, 1051
BceAI	ACGGC	2 cut(s)	190, 253
BciT130I	CCWGG	1 cut(s)	402
BciVI	GTATCC	1 cut(s)	793
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	3 cut(s)	125, 578, 930
BfmI	CTRYAG	2 cut(s)	286, 1020
BfoI	RGCGCY	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	793
BglII	AGATCT	4 cut(s)	512, 587, 932, 944
BisI	GCNGC	5 cut(s)	160, 241, 679, 729, 903
BlsI	GCNGC	5 cut(s)	161, 242, 680, 730, 904
BmcAI	AGTACT	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	437
BmeRI	GACNNNNNGTC	1 cut(s)	769
BmeT110I	CYCGRG	2 cut(s)	936, 981
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	4 cut(s)	418, 439, 906, 1090
BmrFI	CCNGG	1 cut(s)	402
BmrI	ACTGGG	1 cut(s)	906
BmsI	GCATC	2 cut(s)	151, 715
BmuI	ACTGGG	1 cut(s)	906
BpiI	GAAGAC	3 cut(s)	179, 307, 765
BpmI	CTGGAG	2 cut(s)	423, 477
BpuEI	CTTGAG	1 cut(s)	500
Bsa29I	ATCGAT	1 cut(s)	526
BsaAI	YACGTR	1 cut(s)	806
BsaHI	GRCGYC	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 914, 1098
Bse1I	ACTGG	2 cut(s)	439, 901
Bse21I	CCTNAGG	1 cut(s)	149
Bse3DI	GCAATG	2 cut(s)	653, 791
BseAI	TCCGGA	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	402
BseCI	ATCGAT	1 cut(s)	526
BseGI	GGATG	2 cut(s)	142, 1043
BseLI	CCNNNNNNNGG	3 cut(s)	154, 914, 1098
BseMI	GCAATG	2 cut(s)	653, 791
BseMII	CTCAG	3 cut(s)	284, 357, 561
BseNI	ACTGG	2 cut(s)	439, 901
BseSI	GKGCMC	1 cut(s)	1042
BseXI	GCAGC	1 cut(s)	740
BseYI	CCCAGC	1 cut(s)	796
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	217
BshNI	GGYRCC	2 cut(s)	416, 904
BshVI	ATCGAT	1 cut(s)	526
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	2 cut(s)	540, 1042
BsiHKCI	CYCGRG	2 cut(s)	936, 981
BsiSI	CCGG	1 cut(s)	169
BsiWI	CGTACG	2 cut(s)	207, 968
BslFI	GGGAC	2 cut(s)	423, 698
BslI	CCNNNNNNNGG	3 cut(s)	154, 914, 1098
BsmAI	GTCTC	1 cut(s)	453
BsmBI	CGTCTC	1 cut(s)	453
BsmFI	GGGAC	2 cut(s)	423, 698
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	1 cut(s)	217
BsoBI	CYCGRG	2 cut(s)	936, 981
Bsp1286I	GDGCHC	2 cut(s)	540, 1042
Bsp13I	TCCGGA	1 cut(s)	168
BspACI	CCGC	8 cut(s)	155, 159, 240, 267, 298, 335, 679, 902
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	3 cut(s)	283, 356, 562
BspDI	ATCGAT	1 cut(s)	526
BspEI	TCCGGA	1 cut(s)	168
BspHI	TCATGA	2 cut(s)	355, 622
BspLI	GGNNCC	4 cut(s)	418, 439, 906, 1090
BspPI	GGATC	5 cut(s)	254, 257, 389, 1083, 1096
BspQI	GCTCTTC	1 cut(s)	48
BspT107I	GGYRCC	2 cut(s)	416, 904
BsrBI	CCGCTC	1 cut(s)	269
BsrDI	GCAATG	2 cut(s)	653, 791
BsrI	ACTGG	2 cut(s)	439, 901
BssNI	GRCGYC	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	6 cut(s)	313, 712, 839, 959, 1024, 1037
Bst6I	CTCTTC	2 cut(s)	48, 308
BstACI	GRCGYC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	806
BstC8I	GCNNGC	3 cut(s)	60, 157, 747
BstDEI	CTNAG	4 cut(s)	149, 270, 343, 570
BstF5I	GGATG	2 cut(s)	142, 1043
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstMAI	GTCTC	1 cut(s)	453
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 452
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	2 cut(s)	286, 1020
BstSLI	GKGCMC	1 cut(s)	1042
BstSNI	TACGTA	1 cut(s)	806
BstV1I	GCAGC	1 cut(s)	740
BstV2I	GAAGAC	3 cut(s)	179, 307, 765
BstX2I	RGATCY	6 cut(s)	246, 512, 587, 932, 944, 1088
BstXI	CCANNNNNNTGG	1 cut(s)	1085
BstYI	RGATCY	6 cut(s)	246, 512, 587, 932, 944, 1088
Bsu15I	ATCGAT	1 cut(s)	526
Bsu36I	CCTNAGG	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	793
BsuRI	GGCC	1 cut(s)	217
BsuTUI	ATCGAT	1 cut(s)	526
BtsCI	GGATG	2 cut(s)	142, 1043
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	3 cut(s)	228, 844, 894
Cac8I	GCNNGC	3 cut(s)	60, 157, 747
CciI	TCATGA	2 cut(s)	355, 622
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	437
ClaI	ATCGAT	1 cut(s)	526
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	6 cut(s)	208, 432, 563, 705, 969, 999
CviAII	CATG	3 cut(s)	356, 623, 760
CviQI	GTAC	6 cut(s)	208, 432, 563, 705, 969, 999
DdeI	CTNAG	4 cut(s)	149, 270, 343, 570
DriI	GACNNNNNGTC	1 cut(s)	769
EaeI	YGGCCR	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	48, 308
Eam1105I	GACNNNNNGTC	1 cut(s)	769
EarI	CTCTTC	2 cut(s)	48, 308
EciI	GGCGGA	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	538
Eco105I	TACGTA	1 cut(s)	806
Eco24I	GRGCYC	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	612
Eco81I	CCTNAGG	1 cut(s)	149
Eco88I	CYCGRG	2 cut(s)	936, 981
EcoICRI	GAGCTC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	540
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	3 cut(s)	359, 626, 763
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	2 cut(s)	423, 698
FatI	CATG	3 cut(s)	355, 622, 759
FauI	CCCGC	2 cut(s)	148, 274
FblI	GTMKAC	2 cut(s)	802, 1019
Fnu4HI	GCNGC	5 cut(s)	160, 241, 679, 729, 903
FokI	GGATG	2 cut(s)	129, 1030
FriOI	GRGCYC	1 cut(s)	540
Fsp4HI	GCNGC	5 cut(s)	160, 241, 679, 729, 903
FspBI	CTAG	3 cut(s)	125, 578, 930
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	5 cut(s)	160, 241, 679, 729, 903
GsaI	CCCAGC	1 cut(s)	800
GsuI	CTGGAG	2 cut(s)	423, 477
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	1 cut(s)	169
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	3 cut(s)	359, 626, 763
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	2 cut(s)	275, 753
HinfI	GANTC	3 cut(s)	352, 574, 827
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	3 cut(s)	110, 274, 726
Hpy166II	GTNNAC	6 cut(s)	225, 388, 471, 803, 1020, 1040
Hpy188I	TCNGA	5 cut(s)	186, 273, 346, 517, 592
Hpy188III	TCNNGA	8 cut(s)	86, 169, 356, 578, 623, 936, 981, 1086
Hpy8I	GTNNAC	6 cut(s)	225, 388, 471, 803, 1020, 1040
Hpy99I	CGWCG	2 cut(s)	205, 263
HpyAV	CCTTC	4 cut(s)	348, 612, 625, 861
HpyCH4III	ACNGT	6 cut(s)	313, 712, 839, 959, 1024, 1037
HpyCH4IV	ACGT	2 cut(s)	221, 805
HpyCH4V	TGCA	8 cut(s)	131, 409, 544, 658, 728, 923, 950, 1040
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 452
HpyF3I	CTNAG	4 cut(s)	149, 270, 343, 570
HpySE526I	ACGT	2 cut(s)	221, 805
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	359, 626, 763
HspAI	GCGC	1 cut(s)	291
Kpn2I	TCCGGA	1 cut(s)	168
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	493, 1069
Lsp1109I	GCAGC	1 cut(s)	740
LweI	GCATC	2 cut(s)	151, 715
MaeI	CTAG	3 cut(s)	125, 578, 930
MaeII	ACGT	2 cut(s)	221, 805
MaeIII	GTNAC	1 cut(s)	42
MbiI	CCGCTC	1 cut(s)	269
MboII	GAAGA	6 cut(s)	65, 184, 295, 307, 765, 836
MflI	RGATCY	6 cut(s)	246, 512, 587, 932, 944, 1088
MhlI	GDGCHC	2 cut(s)	540, 1042
MluCI	AATT	4 cut(s)	18, 486, 519, 857
MroI	TCCGGA	1 cut(s)	168
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	837
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	2 cut(s)	297, 452
NlaIII	CATG	3 cut(s)	359, 626, 763
NlaIV	GGNNCC	4 cut(s)	418, 439, 906, 1090
NmuCI	GTSAC	1 cut(s)	42
PaeR7I	CTCGAG	2 cut(s)	936, 981
PagI	TCATGA	2 cut(s)	355, 622
PciSI	GCTCTTC	1 cut(s)	48
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	3 cut(s)	352, 574, 827
Pfl23II	CGTACG	2 cut(s)	207, 968
PflMI	CCANNNNNTGG	1 cut(s)	914
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	5 cut(s)	161, 242, 680, 730, 904
Ple19I	CGATCG	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	806
Psp124BI	GAGCTC	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	796
PspGI	CCWGG	1 cut(s)	400
PspLI	CGTACG	2 cut(s)	207, 968
PspN4I	GGNNCC	4 cut(s)	418, 439, 906, 1090
PspPI	GGNCC	1 cut(s)	437
PsuI	RGATCY	6 cut(s)	246, 512, 587, 932, 944, 1088
PvuI	CGATCG	1 cut(s)	214
RsaI	GTAC	6 cut(s)	209, 433, 564, 706, 970, 1000
RsaNI	GTAC	6 cut(s)	208, 432, 563, 705, 969, 999
RseI	CAYNNNNRTG	1 cut(s)	837
SacI	GAGCTC	1 cut(s)	540
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	5 cut(s)	160, 241, 679, 729, 903
Sau96I	GGNCC	1 cut(s)	437
ScaI	AGTACT	1 cut(s)	433
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	2 cut(s)	540, 1042
SfaNI	GCATC	2 cut(s)	151, 715
SfcI	CTRYAG	2 cut(s)	286, 1020
Sfr274I	CTCGAG	2 cut(s)	936, 981
SinI	GGWCC	1 cut(s)	437
SlaI	CTCGAG	2 cut(s)	936, 981
SmiMI	CAYNNNNRTG	1 cut(s)	837
SmlI	CTYRAG	3 cut(s)	479, 936, 981
SmoI	CTYRAG	3 cut(s)	479, 936, 981
SnaBI	TACGTA	1 cut(s)	806
Sse9I	AATT	4 cut(s)	18, 486, 519, 857
SsiI	CCGC	8 cut(s)	155, 159, 240, 267, 298, 335, 679, 902
SspMI	CTAG	3 cut(s)	125, 578, 930
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	400
TaaI	ACNGT	6 cut(s)	313, 712, 839, 959, 1024, 1037
TaiI	ACGT	2 cut(s)	224, 808
TaqI	TCGA	6 cut(s)	261, 526, 811, 883, 937, 982
TaqII	GACCGA	1 cut(s)	1047
TasI	AATT	4 cut(s)	18, 486, 519, 857
TatI	WGTACW	3 cut(s)	431, 704, 998
TauI	GCSGC	4 cut(s)	162, 243, 681, 905
TfiI	GAWTC	3 cut(s)	352, 574, 827
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	3 cut(s)	235, 844, 901
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	372, 837
TspRI	CASTG	3 cut(s)	235, 844, 901
Van91I	CCANNNNNTGG	1 cut(s)	914
VneI	GTGCAC	1 cut(s)	1038
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	2 cut(s)	18, 486
XbaI	TCTAGA	1 cut(s)	577
XhoI	CTCGAG	2 cut(s)	936, 981
XmiI	GTMKAC	2 cut(s)	802, 1019
XspI	CTAG	3 cut(s)	125, 578, 930
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.