Nuclear pore complex protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G10650 AT3G10650 |
| fragaria_vesca | FvH4_7g05430 FvH4_7g05440 FvH4_7g05440 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 FvH4_7g05480 |
| malus_domestica | MD02G1257800.v1.1 MD07G1063100.v1.1 |
| prunus_persica | Prupe.2G074800_v2.0.a1 |
| pyrus_communis | pycom02g21880 pycom07g04820 |
| rosa_chinensis | RchiOBHm_Chr1g0332241 |
| rosa_laevigata | RLG00000029683 |
| rosa_multiflora | Rmu_co8444859.1_g000001 Rmu_sc0016174.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00318320 |
| rosa_rugosa | Rorug01G0099200 |
| rosa_samantha | Rh1AG123000 Rh1BG094100 Rh1CG117600 Rh1DG128400 |
| rosa_wichuraiana | Rw1G010030 Rw1G010040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1482 |
| AarI | CACCTGC | 1 cut(s) | 2812 |
| Acc16I | TGCGCA | 1 cut(s) | 1695 |
| Acc36I | ACCTGC | 3 cut(s) | 2812, 3016, 3103 |
| AccB1I | GGYRCC | 4 cut(s) | 344, 832, 2230, 3824 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 842, 3623 |
| AccBSI | CCGCTC | 2 cut(s) | 125, 182 |
| AccI | GTMKAC | 3 cut(s) | 947, 1201, 3602 |
| AccII | CGCG | 1 cut(s) | 16 |
| AccIII | TCCGGA | 1 cut(s) | 66 |
| AclWI | GGATC | 9 cut(s) | 167, 170, 302, 317, 330, 359, 1024, 1078, 2633 |
| AcoI | YGGCCR | 2 cut(s) | 2791, 3625 |
| AcsI | RAATTY | 9 cut(s) | 411, 560, 1092, 1460, 2261, 2305, 2540, 2594, 3110 |
| AcuI | CTGAAG | 5 cut(s) | 537, 1884, 2967, 3054, 3552 |
| AcvI | CACGTG | 1 cut(s) | 2797 |
| AcyI | GRCGYC | 2 cut(s) | 74, 101 |
| AfeI | AGCGCT | 1 cut(s) | 738 |
| AflII | CTTAAG | 1 cut(s) | 1129 |
| AflIII | ACRYGT | 1 cut(s) | 2796 |
| AhlI | ACTAGT | 2 cut(s) | 2183, 2780 |
| AjiI | CACGTC | 1 cut(s) | 2373 |
| AjnI | CCWGG | 7 cut(s) | 328, 1437, 1942, 2514, 2524, 2575, 2851 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 361, 393 |
| Alw21I | GWGCWC | 4 cut(s) | 465, 1735, 2842, 2918 |
| Alw26I | GTCTC | 4 cut(s) | 728, 1236, 2275, 2322 |
| Alw44I | GTGCAC | 1 cut(s) | 2838 |
| AlwI | GGATC | 9 cut(s) | 167, 170, 302, 317, 330, 359, 1024, 1078, 2633 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1429, 1673, 3176 |
| Ama87I | CYCGRG | 3 cut(s) | 864, 909, 3490 |
| Aor13HI | TCCGGA | 1 cut(s) | 66 |
| Aor51HI | AGCGCT | 1 cut(s) | 738 |
| AoxI | GGCC | 8 cut(s) | 113, 692, 1029, 1184, 1716, 2139, 2791, 3625 |
| ApaLI | GTGCAC | 1 cut(s) | 2838 |
| ApoI | RAATTY | 9 cut(s) | 411, 560, 1092, 1460, 2261, 2305, 2540, 2594, 3110 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2253, 2285 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2584, 2782 |
| AspA2I | CCTAGG | 1 cut(s) | 3793 |
| AspLEI | GCGC | 7 cut(s) | 16, 206, 739, 1696, 1949, 2684, 3359 |
| AspS9I | GGNCC | 8 cut(s) | 114, 1029, 1079, 1568, 1716, 2026, 2140, 2504 |
| AsuII | TTCGAA | 1 cut(s) | 130 |
| AvaI | CYCGRG | 3 cut(s) | 864, 909, 3490 |
| AvaII | GGWCC | 4 cut(s) | 1079, 1568, 2026, 2504 |
| AvrII | CCTAGG | 1 cut(s) | 3793 |
| BaeGI | GKGCMC | 2 cut(s) | 2515, 2842 |
| BalI | TGGCCA | 2 cut(s) | 2793, 3627 |
| BamHI | GGATCC | 1 cut(s) | 322 |
| BanI | GGYRCC | 4 cut(s) | 344, 832, 2230, 3824 |
| BanII | GRGCYC | 3 cut(s) | 465, 1362, 2918 |
| BauI | CACGAG | 2 cut(s) | 1177, 2071 |
| BbrPI | CACGTG | 1 cut(s) | 2797 |
| BbsI | GAAGAC | 4 cut(s) | 77, 220, 3525, 3540 |
| Bbv12I | GWGCWC | 4 cut(s) | 465, 1735, 2842, 2918 |
| BbvCI | CCTCAGC | 1 cut(s) | 3169 |
| BccI | CCATC | 7 cut(s) | 383, 718, 979, 1579, 1796, 2339, 3442 |
| BceAI | ACGGC | 4 cut(s) | 24, 88, 2174, 2552 |
| BciT130I | CCWGG | 7 cut(s) | 330, 1439, 1944, 2516, 2526, 2577, 2853 |
| BciVI | GTATCC | 3 cut(s) | 715, 1444, 1515 |
| BclI | TGATCA | 1 cut(s) | 3502 |
| BcoDI | GTCTC | 4 cut(s) | 728, 1236, 2275, 2322 |
| BcuI | ACTAGT | 2 cut(s) | 2183, 2780 |
| BfmI | CTRYAG | 7 cut(s) | 199, 660, 948, 1665, 1851, 3480, 3596 |
| BfoI | RGCGCY | 2 cut(s) | 207, 740 |
| BfrI | CTTAAG | 1 cut(s) | 1129 |
| BfuAI | ACCTGC | 3 cut(s) | 2812, 3016, 3103 |
| BfuI | GTATCC | 3 cut(s) | 715, 1444, 1515 |
| BglII | AGATCT | 4 cut(s) | 371, 512, 860, 872 |
| BlnI | CCTAGG | 1 cut(s) | 3793 |
| BmcAI | AGTACT | 4 cut(s) | 361, 2971, 2983, 3058 |
| Bme1390I | CCNGG | 7 cut(s) | 330, 1439, 1944, 2516, 2526, 2577, 2853 |
| Bme18I | GGWCC | 4 cut(s) | 1079, 1568, 2026, 2504 |
| BmeT110I | CYCGRG | 3 cut(s) | 864, 909, 3490 |
| BmgBI | CACGTC | 1 cut(s) | 2373 |
| BmgT120I | GGNCC | 8 cut(s) | 114, 1029, 1079, 1568, 1716, 2026, 2140, 2504 |
| BmrFI | CCNGG | 7 cut(s) | 330, 1439, 1944, 2516, 2526, 2577, 2853 |
| BmrI | ACTGGG | 1 cut(s) | 3611 |
| BmuI | ACTGGG | 1 cut(s) | 3611 |
| BpiI | GAAGAC | 4 cut(s) | 77, 220, 3525, 3540 |
| BpmI | CTGGAG | 6 cut(s) | 351, 405, 1460, 1766, 2835, 2950 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3169 |
| Bpu14I | TTCGAA | 1 cut(s) | 130 |
| BpuEI | CTTGAG | 1 cut(s) | 2079 |
| Bsa29I | ATCGAT | 1 cut(s) | 451 |
| BsaAI | YACGTR | 2 cut(s) | 1418, 2797 |
| BsaHI | GRCGYC | 2 cut(s) | 74, 101 |
| BsaI | GGTCTC | 1 cut(s) | 728 |
| BsaJI | CCNNGG | 5 cut(s) | 2313, 2514, 2589, 3489, 3793 |
| BsaWI | WCCGGW | 2 cut(s) | 66, 1840 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3412, 3442 |
| Bse118I | RCCGGY | 1 cut(s) | 3395 |
| Bse1I | ACTGG | 7 cut(s) | 2500, 2736, 2818, 2967, 3054, 3617, 3688 |
| Bse3DI | GCAATG | 3 cut(s) | 575, 829, 2172 |
| BseAI | TCCGGA | 1 cut(s) | 66 |
| BseBI | CCWGG | 7 cut(s) | 330, 1439, 1944, 2516, 2526, 2577, 2853 |
| BseCI | ATCGAT | 1 cut(s) | 451 |
| BseDI | CCNNGG | 5 cut(s) | 2313, 2514, 2589, 3489, 3793 |
| BseGI | GGATG | 9 cut(s) | 971, 1450, 1507, 1648, 1696, 1759, 3164, 3212, 3326 |
| BseMI | GCAATG | 3 cut(s) | 575, 829, 2172 |
| BseMII | CTCAG | 7 cut(s) | 197, 414, 998, 1062, 1347, 2274, 3183 |
| BseNI | ACTGG | 7 cut(s) | 2500, 2736, 2818, 2967, 3054, 3617, 3688 |
| BseRI | GAGGAG | 2 cut(s) | 237, 1195 |
| BseSI | GKGCMC | 2 cut(s) | 2515, 2842 |
| BseYI | CCCAGC | 1 cut(s) | 2807 |
| BsgI | GTGCAG | 5 cut(s) | 2421, 2904, 2958, 3261, 3759 |
| Bsh1236I | CGCG | 1 cut(s) | 16 |
| BshFI | GGCC | 8 cut(s) | 115, 694, 1031, 1186, 1718, 2141, 2793, 3627 |
| BshNI | GGYRCC | 4 cut(s) | 344, 832, 2230, 3824 |
| BshVI | ATCGAT | 1 cut(s) | 451 |
| BsiHKAI | GWGCWC | 4 cut(s) | 465, 1735, 2842, 2918 |
| BsiHKCI | CYCGRG | 3 cut(s) | 864, 909, 3490 |
| BsiSI | CCGG | 3 cut(s) | 67, 1841, 3396 |
| BsiWI | CGTACG | 1 cut(s) | 896 |
| BslFI | GGGAC | 3 cut(s) | 2000, 2012, 2824 |
| BsmAI | GTCTC | 4 cut(s) | 728, 1236, 2275, 2322 |
| BsmFI | GGGAC | 3 cut(s) | 2000, 2012, 2824 |
| BsmI | GAATGC | 1 cut(s) | 3264 |
| BsnI | GGCC | 8 cut(s) | 115, 694, 1031, 1186, 1718, 2141, 2793, 3627 |
| Bso31I | GGTCTC | 1 cut(s) | 728 |
| BsoBI | CYCGRG | 3 cut(s) | 864, 909, 3490 |
| Bsp119I | TTCGAA | 1 cut(s) | 130 |
| Bsp1286I | GDGCHC | 6 cut(s) | 465, 1362, 1735, 2515, 2842, 2918 |
| Bsp13I | TCCGGA | 1 cut(s) | 66 |
| BspANI | GGCC | 8 cut(s) | 115, 694, 1031, 1186, 1718, 2141, 2793, 3627 |
| BspCNI | CTCAG | 7 cut(s) | 196, 413, 997, 1061, 1348, 2275, 3182 |
| BspDI | ATCGAT | 1 cut(s) | 451 |
| BspEI | TCCGGA | 1 cut(s) | 66 |
| BspFNI | CGCG | 1 cut(s) | 16 |
| BspHI | TCATGA | 3 cut(s) | 283, 547, 1735 |
| BspMAI | CTGCAG | 2 cut(s) | 1669, 3600 |
| BspMI | ACCTGC | 3 cut(s) | 2812, 3016, 3103 |
| BspPI | GGATC | 9 cut(s) | 167, 170, 302, 317, 330, 359, 1024, 1078, 2633 |
| BspQI | GCTCTTC | 1 cut(s) | 132 |
| BspT104I | TTCGAA | 1 cut(s) | 130 |
| BspT107I | GGYRCC | 4 cut(s) | 344, 832, 2230, 3824 |
| BspTI | CTTAAG | 1 cut(s) | 1129 |
| BspTNI | GGTCTC | 1 cut(s) | 728 |
| BsrBI | CCGCTC | 2 cut(s) | 125, 182 |
| BsrDI | GCAATG | 3 cut(s) | 575, 829, 2172 |
| BsrFI | RCCGGY | 1 cut(s) | 3395 |
| BsrI | ACTGG | 7 cut(s) | 2500, 2736, 2818, 2967, 3054, 3617, 3688 |
| BssAI | RCCGGY | 1 cut(s) | 3395 |
| BssECI | CCNNGG | 5 cut(s) | 2313, 2514, 2589, 3489, 3793 |
| BssNI | GRCGYC | 2 cut(s) | 74, 101 |
| BssSI | CACGAG | 2 cut(s) | 1177, 2071 |
| BssT1I | CCWWGG | 3 cut(s) | 2313, 2589, 3793 |
| Bst2BI | CACGAG | 2 cut(s) | 1177, 2071 |
| Bst2UI | CCWGG | 7 cut(s) | 330, 1439, 1944, 2516, 2526, 2577, 2853 |
| Bst6I | CTCTTC | 5 cut(s) | 15, 132, 2911, 2947, 3034 |
| BstACI | GRCGYC | 2 cut(s) | 74, 101 |
| BstAFI | CTTAAG | 1 cut(s) | 1129 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1673, 1886, 2675 |
| BstBAI | YACGTR | 2 cut(s) | 1418, 2797 |
| BstBI | TTCGAA | 1 cut(s) | 130 |
| BstC8I | GCNNGC | 7 cut(s) | 669, 2383, 2404, 2659, 2680, 3444, 3629 |
| BstDEI | CTNAG | 9 cut(s) | 183, 400, 984, 1048, 1356, 1395, 2283, 2363, 3169 |
| BstF5I | GGATG | 9 cut(s) | 971, 1450, 1507, 1648, 1696, 1759, 3164, 3212, 3326 |
| BstFNI | CGCG | 1 cut(s) | 16 |
| BstH2I | RGCGCY | 2 cut(s) | 207, 740 |
| BstHHI | GCGC | 7 cut(s) | 16, 206, 739, 1696, 1949, 2684, 3359 |
| BstMAI | GTCTC | 4 cut(s) | 728, 1236, 2275, 2322 |
| BstNI | CCWGG | 7 cut(s) | 330, 1439, 1944, 2516, 2526, 2577, 2853 |
| BstNSI | RCATGY | 1 cut(s) | 3403 |
| BstSCI | CCNGG | 7 cut(s) | 328, 1437, 1942, 2514, 2524, 2575, 2851 |
| BstSFI | CTRYAG | 7 cut(s) | 199, 660, 948, 1665, 1851, 3480, 3596 |
| BstSLI | GKGCMC | 2 cut(s) | 2515, 2842 |
| BstUI | CGCG | 1 cut(s) | 16 |
| BstV2I | GAAGAC | 4 cut(s) | 77, 220, 3525, 3540 |
| BstX2I | RGATCY | 9 cut(s) | 159, 322, 371, 512, 860, 872, 1016, 1070, 2625 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1013, 2467 |
| BstYI | RGATCY | 9 cut(s) | 159, 322, 371, 512, 860, 872, 1016, 1070, 2625 |
| Bsu15I | ATCGAT | 1 cut(s) | 451 |
| BsuI | GTATCC | 3 cut(s) | 715, 1444, 1515 |
| BsuRI | GGCC | 8 cut(s) | 115, 694, 1031, 1186, 1718, 2141, 2793, 3627 |
| BsuTUI | ATCGAT | 1 cut(s) | 451 |
| BtrI | CACGTC | 1 cut(s) | 2373 |
| BtsCI | GGATG | 9 cut(s) | 971, 1450, 1507, 1648, 1696, 1759, 3164, 3212, 3326 |
| BtsI | GCAGTG | 4 cut(s) | 141, 772, 2145, 2779 |
| BveI | ACCTGC | 3 cut(s) | 2812, 3016, 3103 |
| Cac8I | GCNNGC | 7 cut(s) | 669, 2383, 2404, 2659, 2680, 3444, 3629 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1429, 1673, 3176 |
| CciI | TCATGA | 3 cut(s) | 283, 547, 1735 |
| CfoI | GCGC | 7 cut(s) | 16, 206, 739, 1696, 1949, 2684, 3359 |
| Cfr10I | RCCGGY | 1 cut(s) | 3395 |
| Cfr13I | GGNCC | 8 cut(s) | 114, 1029, 1079, 1568, 1716, 2026, 2140, 2504 |
| ClaI | ATCGAT | 1 cut(s) | 451 |
| CseI | GACGC | 2 cut(s) | 82, 109 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 519, 554, 1176, 1211, 1953, 1988, 3235, 3270 |
| DdeI | CTNAG | 9 cut(s) | 183, 400, 984, 1048, 1356, 1395, 2283, 2363, 3169 |
| EaeI | YGGCCR | 2 cut(s) | 2791, 3625 |
| Eam1104I | CTCTTC | 5 cut(s) | 15, 132, 2911, 2947, 3034 |
| EarI | CTCTTC | 5 cut(s) | 15, 132, 2911, 2947, 3034 |
| EciI | GGCGGA | 3 cut(s) | 240, 1832, 3543 |
| Ecl136II | GAGCTC | 2 cut(s) | 463, 2916 |
| Eco130I | CCWWGG | 3 cut(s) | 2313, 2589, 3793 |
| Eco147I | AGGCCT | 1 cut(s) | 694 |
| Eco24I | GRGCYC | 3 cut(s) | 465, 1362, 2918 |
| Eco31I | GGTCTC | 1 cut(s) | 728 |
| Eco47I | GGWCC | 4 cut(s) | 1079, 1568, 2026, 2504 |
| Eco47III | AGCGCT | 1 cut(s) | 738 |
| Eco53kI | GAGCTC | 2 cut(s) | 463, 2916 |
| Eco57I | CTGAAG | 5 cut(s) | 537, 1884, 2967, 3054, 3552 |
| Eco72I | CACGTG | 1 cut(s) | 2797 |
| Eco88I | CYCGRG | 3 cut(s) | 864, 909, 3490 |
| EcoICRI | GAGCTC | 2 cut(s) | 463, 2916 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1029, 2026 |
| EcoRI | GAATTC | 2 cut(s) | 1092, 2594 |
| EcoRII | CCWGG | 7 cut(s) | 328, 1437, 1942, 2514, 2524, 2575, 2851 |
| EcoT14I | CCWWGG | 3 cut(s) | 2313, 2589, 3793 |
| EcoT22I | ATGCAT | 1 cut(s) | 1786 |
| EcoT38I | GRGCYC | 3 cut(s) | 465, 1362, 2918 |
| ErhI | CCWWGG | 3 cut(s) | 2313, 2589, 3793 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 361, 393 |
| FaqI | GGGAC | 3 cut(s) | 2000, 2012, 2824 |
| FauI | CCCGC | 5 cut(s) | 9, 187, 2615, 2990, 3077 |
| FauNDI | CATATG | 1 cut(s) | 992 |
| FbaI | TGATCA | 1 cut(s) | 3502 |
| FblI | GTMKAC | 3 cut(s) | 947, 1201, 3602 |
| FokI | GGATG | 9 cut(s) | 958, 1457, 1514, 1655, 1683, 1766, 3151, 3199, 3313 |
| FriOI | GRGCYC | 3 cut(s) | 465, 1362, 2918 |
| FspI | TGCGCA | 1 cut(s) | 1695 |
| GlaI | GCGC | 7 cut(s) | 15, 205, 738, 1695, 1948, 2683, 3358 |
| GsaI | CCCAGC | 1 cut(s) | 2811 |
| GsuI | CTGGAG | 6 cut(s) | 351, 405, 1460, 1766, 2835, 2950 |
| HaeII | RGCGCY | 2 cut(s) | 207, 740 |
| HaeIII | GGCC | 8 cut(s) | 115, 694, 1031, 1186, 1718, 2141, 2793, 3627 |
| HapII | CCGG | 3 cut(s) | 67, 1841, 3396 |
| HgaI | GACGC | 2 cut(s) | 82, 109 |
| HhaI | GCGC | 7 cut(s) | 16, 206, 739, 1696, 1949, 2684, 3359 |
| Hin1I | GRCGYC | 2 cut(s) | 74, 101 |
| Hin6I | GCGC | 7 cut(s) | 14, 204, 737, 1694, 1947, 2682, 3357 |
| HinP1I | GCGC | 7 cut(s) | 14, 204, 737, 1694, 1947, 2682, 3357 |
| HincII | GTYRAC | 2 cut(s) | 3578, 3642 |
| HindII | GTYRAC | 2 cut(s) | 3578, 3642 |
| HindIII | AAGCTT | 1 cut(s) | 675 |
| HinfI | GANTC | 6 cut(s) | 41, 499, 749, 1625, 1976, 2499 |
| HpaII | CCGG | 3 cut(s) | 67, 1841, 3396 |
| Hpy166II | GTNNAC | 7 cut(s) | 396, 948, 1202, 2840, 3578, 3603, 3642 |
| Hpy8I | GTNNAC | 7 cut(s) | 396, 948, 1202, 2840, 3578, 3603, 3642 |
| Hpy99I | CGWCG | 3 cut(s) | 103, 176, 1459 |
| HpyCH4IV | ACGT | 5 cut(s) | 1417, 1454, 2372, 2796, 3296 |
| HpyF3I | CTNAG | 9 cut(s) | 183, 400, 984, 1048, 1356, 1395, 2283, 2363, 3169 |
| HpySE526I | ACGT | 5 cut(s) | 1417, 1454, 2372, 2796, 3296 |
| Hsp92I | GRCGYC | 2 cut(s) | 74, 101 |
| HspAI | GCGC | 7 cut(s) | 14, 204, 737, 1694, 1947, 2682, 3357 |
| KflI | GGGWCCC | 1 cut(s) | 2026 |
| Kpn2I | TCCGGA | 1 cut(s) | 66 |
| Ksp22I | TGATCA | 1 cut(s) | 3502 |
| LguI | GCTCTTC | 1 cut(s) | 132 |
| MaeII | ACGT | 5 cut(s) | 1417, 1454, 2372, 2796, 3296 |
| MbiI | CCGCTC | 2 cut(s) | 125, 182 |
| MfeI | CAATTG | 1 cut(s) | 1794 |
| MflI | RGATCY | 9 cut(s) | 159, 322, 371, 512, 860, 872, 1016, 1070, 2625 |
| MhlI | GDGCHC | 6 cut(s) | 465, 1362, 1735, 2515, 2842, 2918 |
| MlsI | TGGCCA | 2 cut(s) | 2793, 3627 |
| MluNI | TGGCCA | 2 cut(s) | 2793, 3627 |
| MmeI | TCCRAC | 5 cut(s) | 2127, 3309, 3324, 3483, 3738 |
| Mox20I | TGGCCA | 2 cut(s) | 2793, 3627 |
| Mph1103I | ATGCAT | 1 cut(s) | 1786 |
| MroI | TCCGGA | 1 cut(s) | 66 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2584, 2782 |
| MscI | TGGCCA | 2 cut(s) | 2793, 3627 |
| Msp20I | TGGCCA | 2 cut(s) | 2793, 3627 |
| MspA1I | CMGCKG | 5 cut(s) | 1832, 2163, 2246, 2657, 3830 |
| MspCI | CTTAAG | 1 cut(s) | 1129 |
| MspI | CCGG | 3 cut(s) | 67, 1841, 3396 |
| MspR9I | CCNGG | 7 cut(s) | 330, 1439, 1944, 2516, 2526, 2577, 2853 |
| MunI | CAATTG | 1 cut(s) | 1794 |
| Mva1269I | GAATGC | 1 cut(s) | 3264 |
| MvaI | CCWGG | 7 cut(s) | 330, 1439, 1944, 2516, 2526, 2577, 2853 |
| MvnI | CGCG | 1 cut(s) | 16 |
| NdeI | CATATG | 1 cut(s) | 992 |
| NmuCI | GTSAC | 6 cut(s) | 769, 1281, 1401, 1592, 2287, 2799 |
| NsbI | TGCGCA | 1 cut(s) | 1695 |
| NsiI | ATGCAT | 1 cut(s) | 1786 |
| NspI | RCATGY | 1 cut(s) | 3403 |
| NspV | TTCGAA | 1 cut(s) | 130 |
| PaeR7I | CTCGAG | 2 cut(s) | 864, 909 |
| PagI | TCATGA | 3 cut(s) | 283, 547, 1735 |
| PaqCI | CACCTGC | 1 cut(s) | 2812 |
| PceI | AGGCCT | 1 cut(s) | 694 |
| PciSI | GCTCTTC | 1 cut(s) | 132 |
| PctI | GAATGC | 1 cut(s) | 3264 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2584, 2782 |
| PfeI | GAWTC | 6 cut(s) | 41, 499, 749, 1625, 1976, 2499 |
| Pfl23II | CGTACG | 1 cut(s) | 896 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 842, 3623 |
| PfoI | TCCNGGA | 1 cut(s) | 328 |
| PmaCI | CACGTG | 1 cut(s) | 2797 |
| PmlI | CACGTG | 1 cut(s) | 2797 |
| Ppu21I | YACGTR | 2 cut(s) | 1418, 2797 |
| PpuMI | RGGWCCY | 1 cut(s) | 2026 |
| PsiI | TTATAA | 1 cut(s) | 1482 |
| Psp124BI | GAGCTC | 2 cut(s) | 465, 2918 |
| Psp5II | RGGWCCY | 1 cut(s) | 2026 |
| Psp6I | CCWGG | 7 cut(s) | 328, 1437, 1942, 2514, 2524, 2575, 2851 |
| PspCI | CACGTG | 1 cut(s) | 2797 |
| PspFI | CCCAGC | 1 cut(s) | 2807 |
| PspGI | CCWGG | 7 cut(s) | 328, 1437, 1942, 2514, 2524, 2575, 2851 |
| PspLI | CGTACG | 1 cut(s) | 896 |
| PspPI | GGNCC | 8 cut(s) | 114, 1029, 1079, 1568, 1716, 2026, 2140, 2504 |
| PspPPI | RGGWCCY | 1 cut(s) | 2026 |
| PstI | CTGCAG | 2 cut(s) | 1669, 3600 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1429, 1673, 3176 |
| PsuI | RGATCY | 9 cut(s) | 159, 322, 371, 512, 860, 872, 1016, 1070, 2625 |
| PvuII | CAGCTG | 2 cut(s) | 1832, 2246 |
| SacI | GAGCTC | 2 cut(s) | 465, 2918 |
| SapI | GCTCTTC | 1 cut(s) | 132 |
| Sau96I | GGNCC | 8 cut(s) | 114, 1029, 1079, 1568, 1716, 2026, 2140, 2504 |
| ScaI | AGTACT | 4 cut(s) | 361, 2971, 2983, 3058 |
| ScrFI | CCNGG | 7 cut(s) | 330, 1439, 1944, 2516, 2526, 2577, 2853 |
| SduI | GDGCHC | 6 cut(s) | 465, 1362, 1735, 2515, 2842, 2918 |
| SfcI | CTRYAG | 7 cut(s) | 199, 660, 948, 1665, 1851, 3480, 3596 |
| Sfr274I | CTCGAG | 2 cut(s) | 864, 909 |
| SfuI | TTCGAA | 1 cut(s) | 130 |
| SinI | GGWCC | 4 cut(s) | 1079, 1568, 2026, 2504 |
| SlaI | CTCGAG | 2 cut(s) | 864, 909 |
| SmlI | CTYRAG | 4 cut(s) | 864, 909, 1129, 2094 |
| SmoI | CTYRAG | 4 cut(s) | 864, 909, 1129, 2094 |
| SpeI | ACTAGT | 2 cut(s) | 2183, 2780 |
| SseBI | AGGCCT | 1 cut(s) | 694 |
| SstI | GAGCTC | 2 cut(s) | 465, 2918 |
| StuI | AGGCCT | 1 cut(s) | 694 |
| StyD4I | CCNGG | 7 cut(s) | 328, 1437, 1942, 2514, 2524, 2575, 2851 |
| StyI | CCWWGG | 3 cut(s) | 2313, 2589, 3793 |
| TaiI | ACGT | 5 cut(s) | 1420, 1457, 2375, 2799, 3299 |
| TaqII | GACCGA | 1 cut(s) | 2492 |
| TatI | WGTACW | 8 cut(s) | 359, 626, 926, 1145, 2969, 2981, 3056, 3068 |
| TauI | GCSGC | 9 cut(s) | 60, 256, 259, 262, 265, 793, 1301, 2370, 3830 |
| TfiI | GAWTC | 6 cut(s) | 41, 499, 749, 1625, 1976, 2499 |
| TseFI | GTSAC | 6 cut(s) | 769, 1281, 1401, 1592, 2287, 2799 |
| Tsp45I | GTSAC | 6 cut(s) | 769, 1281, 1401, 1592, 2287, 2799 |
| TspDTI | ATGAA | 8 cut(s) | 300, 657, 759, 1158, 1497, 1632, 2847, 3192 |
| TspGWI | ACGGA | 2 cut(s) | 1269, 1534 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 842, 3623 |
| Vha464I | CTTAAG | 1 cut(s) | 1129 |
| VneI | GTGCAC | 1 cut(s) | 2838 |
| VpaK11BI | GGWCC | 4 cut(s) | 1079, 1568, 2026, 2504 |
| XapI | RAATTY | 9 cut(s) | 411, 560, 1092, 1460, 2261, 2305, 2540, 2594, 3110 |
| XbaI | TCTAGA | 1 cut(s) | 1121 |
| XceI | RCATGY | 1 cut(s) | 3403 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1213, 2522, 2743 |
| XhoI | CTCGAG | 2 cut(s) | 864, 909 |
| XmaJI | CCTAGG | 1 cut(s) | 3793 |
| XmiI | GTMKAC | 3 cut(s) | 947, 1201, 3602 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2584, 2782 |
| ZrmI | AGTACT | 4 cut(s) | 361, 2971, 2983, 3058 |
| Zsp2I | ATGCAT | 1 cut(s) | 1786 |